Wall clock time and date at job start Sun Mar 29 2020 22:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38119 * 120.39939 * 2 1 4 4 C 1.39626 * 118.33287 * 180.02562 * 3 2 1 5 5 N 1.38542 * 120.52956 * 180.02562 * 4 3 2 6 6 C 1.46499 * 119.99646 * 190.86566 * 5 4 3 7 7 C 1.46501 * 120.00247 * 10.86311 * 5 4 3 8 8 H 1.09001 * 109.47028 * 1.04908 * 7 5 4 9 9 C 1.52994 * 109.47165 * 121.04742 * 7 5 4 10 10 C 1.50693 * 109.47077 * 241.05228 * 7 5 4 11 11 H 1.08000 * 120.00621 * 359.97438 * 10 7 5 12 12 C 1.37877 * 119.99722 * 179.97438 * 10 7 5 13 13 N 1.31507 * 120.00522 * 0.02562 * 12 10 7 14 14 Si 1.86809 * 119.99728 * 179.97438 * 12 10 7 15 15 H 1.48508 * 109.46862 * 90.00514 * 14 12 10 16 16 H 1.48498 * 109.46753 * 209.99875 * 14 12 10 17 17 H 1.48498 * 109.47261 * 330.00170 * 14 12 10 18 18 N 1.32993 * 118.93604 * 359.73449 * 4 3 2 19 19 C 1.31753 * 120.68778 * 0.53717 * 18 4 3 20 20 C 1.50694 * 119.08591 * 179.72221 * 19 18 4 21 21 O 1.42896 * 109.47269 * 269.73662 * 20 19 18 22 22 N 1.31794 * 121.82817 * 359.44767 * 19 18 4 23 23 H 1.09001 * 109.46990 * 269.97388 * 1 2 3 24 24 H 1.09002 * 109.47633 * 29.97813 * 1 2 3 25 25 H 1.09001 * 109.47120 * 149.98119 * 1 2 3 26 26 H 1.07998 * 120.83298 * 359.97438 * 3 2 1 27 27 H 1.08996 * 109.47275 * 90.00158 * 6 5 4 28 28 H 1.09009 * 109.46893 * 210.00125 * 6 5 4 29 29 H 1.08998 * 109.47155 * 329.99606 * 6 5 4 30 30 H 1.09001 * 109.47012 * 60.00155 * 9 7 5 31 31 H 1.08997 * 109.47379 * 180.02562 * 9 7 5 32 32 H 1.09003 * 109.47149 * 300.00605 * 9 7 5 33 33 H 0.96994 * 120.00725 * 180.02562 * 13 12 10 34 34 H 1.09000 * 109.47389 * 149.73106 * 20 19 18 35 35 H 1.08998 * 109.46941 * 29.73253 * 20 19 18 36 36 H 0.96697 * 114.00072 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2059 1.1913 0.0000 4 6 3.6012 1.1409 -0.0005 5 7 4.3476 2.3082 0.0000 6 6 5.7918 2.2541 -0.2398 7 6 3.6926 3.5964 0.2402 8 1 2.6287 3.4360 0.4151 9 6 4.3161 4.2646 1.4672 10 6 3.8755 4.4850 -0.9631 11 1 4.4250 4.1263 -1.8209 12 6 3.3412 5.7560 -0.9690 13 7 2.6725 6.1931 0.0756 14 14 3.5685 6.8578 -2.4603 15 1 2.4429 6.6488 -3.4063 16 1 3.5939 8.2780 -2.0272 17 1 4.8492 6.5224 -3.1330 18 7 4.2023 -0.0454 0.0043 19 6 3.4956 -1.1573 -0.0010 20 6 4.2140 -2.4820 -0.0015 21 8 4.4407 -2.9004 -1.3489 22 7 2.1777 -1.1432 -0.0005 23 1 -0.3633 -0.0005 1.0277 24 1 -0.3634 0.8902 -0.5135 25 1 -0.3633 -0.8898 -0.5141 26 1 1.6861 2.1380 -0.0004 27 1 5.9864 2.3458 -1.3083 28 1 6.2789 3.0730 0.2898 29 1 6.1847 1.3035 0.1209 30 1 5.3800 4.4249 1.2923 31 1 3.8285 5.2228 1.6462 32 1 4.1838 3.6217 2.3375 33 1 2.2963 7.0871 0.0714 34 1 3.6051 -3.2258 0.5124 35 1 5.1697 -2.3771 0.5119 36 1 4.8999 -3.7479 -1.4256 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321380681.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:47 Heat of formation + Delta-G solvation = -15.421526 kcal Electronic energy + Delta-G solvation = -18596.467345 eV Core-core repulsion = 15694.236787 eV Total energy + Delta-G solvation = -2902.230559 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.94042 -38.72619 -37.63103 -35.49677 -34.60352 -32.91253 -30.98490 -29.66996 -28.45941 -27.33572 -26.80427 -24.03449 -22.69293 -21.30881 -18.82745 -18.51936 -18.25602 -18.04767 -16.72823 -16.27403 -15.96005 -15.68623 -15.35919 -15.08847 -14.87200 -14.52070 -14.05779 -13.77672 -13.50702 -13.17980 -13.08776 -13.01889 -12.87267 -12.71673 -12.58266 -12.26895 -12.15615 -11.84003 -11.43170 -11.10935 -11.04244 -10.55433 -10.54882 -10.14725 -8.69544 -8.16717 -6.34714 0.06435 0.44792 1.39571 1.41919 1.50805 2.05492 2.41084 2.72639 3.04297 3.09191 3.32379 3.82631 3.96617 4.19969 4.31252 4.42103 4.44093 4.55120 4.59594 4.66758 4.76927 4.78500 4.85906 4.93943 4.98267 5.01436 5.07799 5.31696 5.53885 5.59575 5.71842 5.95530 6.09930 6.47568 6.60605 6.77077 6.92791 7.31830 7.39807 8.83990 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.025568 B = 0.006063 C = 0.005614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.836700 B = 4617.082281 C = 4986.442428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.190 3.810 3 C -0.306 4.306 4 C 0.424 3.576 5 N -0.582 5.582 6 C 0.107 3.893 7 C 0.271 3.729 8 H 0.035 0.965 9 C -0.137 4.137 10 C -0.542 4.542 11 H 0.049 0.951 12 C 0.028 3.972 13 N -0.909 5.909 14 Si 0.957 3.043 15 H -0.278 1.278 16 H -0.278 1.278 17 H -0.273 1.273 18 N -0.589 5.589 19 C 0.336 3.664 20 C 0.159 3.841 21 O -0.585 6.585 22 N -0.570 5.570 23 H 0.099 0.901 24 H 0.085 0.915 25 H 0.090 0.910 26 H 0.137 0.863 27 H 0.036 0.964 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.040 0.960 31 H 0.077 0.923 32 H 0.023 0.977 33 H 0.268 0.732 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.656 -12.640 1.646 12.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.049 3.951 3 C -0.335 4.335 4 C 0.181 3.819 5 N -0.290 5.290 6 C -0.035 4.035 7 C 0.169 3.831 8 H 0.052 0.948 9 C -0.195 4.195 10 C -0.581 4.581 11 H 0.067 0.933 12 C -0.173 4.173 13 N -0.547 5.547 14 Si 0.783 3.217 15 H -0.204 1.204 16 H -0.203 1.203 17 H -0.198 1.198 18 N -0.317 5.317 19 C 0.065 3.935 20 C 0.080 3.920 21 O -0.394 6.394 22 N -0.294 5.294 23 H 0.117 0.883 24 H 0.104 0.896 25 H 0.109 0.891 26 H 0.155 0.845 27 H 0.055 0.945 28 H 0.090 0.910 29 H 0.095 0.905 30 H 0.059 0.941 31 H 0.096 0.904 32 H 0.042 0.958 33 H 0.077 0.923 34 H 0.112 0.888 35 H 0.103 0.897 36 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 0.850 -12.533 1.591 12.662 hybrid contribution 0.036 1.370 -0.609 1.500 sum 0.886 -11.163 0.982 11.241 Atomic orbital electron populations 1.20790 0.85421 1.04467 1.04589 1.21893 0.98835 0.86812 0.87581 1.22252 0.94007 1.01331 1.15877 1.18911 0.89079 0.86845 0.87102 1.47091 1.07944 1.03552 1.70452 1.21437 0.79732 1.02410 0.99958 1.18833 0.92430 0.77725 0.94075 0.94756 1.21951 0.99991 1.01681 0.95908 1.21495 1.35855 0.99286 1.01463 0.93281 1.25528 0.94371 0.98657 0.98710 1.69939 1.35758 1.18970 1.30059 0.85576 0.78457 0.78122 0.79593 1.20410 1.20277 1.19798 1.67738 1.41677 0.97516 1.24721 1.23179 0.87073 0.93880 0.89369 1.20590 0.98650 0.88105 0.84694 1.86463 1.82296 1.44890 1.25702 1.68084 1.09242 1.30047 1.21986 0.88255 0.89646 0.89141 0.84504 0.94529 0.90990 0.90496 0.94108 0.90441 0.95778 0.92301 0.88833 0.89729 0.74033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.46 10.21 71.24 0.73 -1.73 16 2 C 0.19 6.80 6.81 42.42 0.29 7.09 16 3 C -0.31 -12.70 9.01 22.58 0.20 -12.50 16 4 C 0.42 18.59 7.35 133.16 0.98 19.57 16 5 N -0.58 -26.06 2.86 -708.33 -2.02 -28.08 16 6 C 0.11 4.22 9.85 127.77 1.26 5.48 16 7 C 0.27 13.27 2.55 44.24 0.11 13.38 16 8 H 0.03 1.82 5.48 -2.39 -0.01 1.80 16 9 C -0.14 -6.33 8.93 71.98 0.64 -5.68 16 10 C -0.54 -28.71 8.38 25.60 0.21 -28.50 16 11 H 0.05 2.67 7.68 -2.91 -0.02 2.65 16 12 C 0.03 1.47 5.30 84.66 0.45 1.92 16 13 N -0.91 -48.76 11.32 21.45 0.24 -48.51 16 14 Si 0.96 42.04 29.54 68.60 2.03 44.06 16 15 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 16 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 17 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 18 N -0.59 -23.93 9.13 -185.44 -1.69 -25.62 16 19 C 0.34 12.20 7.27 138.76 1.01 13.21 16 20 C 0.16 4.04 7.48 71.23 0.53 4.57 16 21 O -0.58 -14.76 13.64 -148.98 -2.03 -16.79 16 22 N -0.57 -20.79 10.27 -176.28 -1.81 -22.60 16 23 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 24 H 0.08 2.07 8.09 -2.39 -0.02 2.05 16 25 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 26 H 0.14 5.90 6.03 -2.91 -0.02 5.88 16 27 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.07 2.70 6.37 -2.38 -0.02 2.68 16 29 H 0.08 2.78 7.27 -2.39 -0.02 2.77 16 30 H 0.04 1.79 6.63 -2.39 -0.02 1.77 16 31 H 0.08 3.90 6.07 -2.39 -0.01 3.89 16 32 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.27 13.63 8.31 -92.71 -0.77 12.86 16 34 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.41 4.95 9.12 -74.06 -0.68 4.27 16 Total: -1.00 -65.05 301.12 1.55 -63.50 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: 0.42 Total: 17.24 kcal Atomic # 6 Polarization: 10.39 SS G_CDS: 6.42 Total: 16.81 kcal Atomic # 7 Polarization: -119.53 SS G_CDS: -5.28 Total: -124.81 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: -2.03 Total: -16.79 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.06 kcal Total: -65.05 1.55 -63.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321380681.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.077 kcal (2) G-P(sol) polarization free energy of solvation -65.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds