Wall clock time and date at job start Sun Mar 29 2020 22:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30837 * 125.82764 * 2 1 4 4 N 1.40069 * 108.36526 * 180.25434 * 3 2 1 5 5 C 1.46502 * 126.05087 * 179.69586 * 4 3 2 6 6 C 1.35810 * 107.89688 * 359.71817 * 4 3 2 7 7 C 1.50703 * 126.22124 * 179.97438 * 6 4 3 8 8 C 1.35751 * 107.55950 * 359.97438 * 6 4 3 9 9 N 1.40766 * 126.07958 * 180.02562 * 8 6 4 10 10 C 1.34783 * 119.99972 * 121.05020 * 9 8 6 11 11 O 1.21300 * 119.99849 * 355.24149 * 10 9 8 12 12 C 1.50702 * 119.99751 * 175.25024 * 10 9 8 13 13 H 1.09004 * 109.46774 * 299.99783 * 12 10 9 14 14 C 1.52996 * 109.47545 * 59.99508 * 12 10 9 15 15 C 1.50700 * 109.47144 * 180.02562 * 12 10 9 16 16 H 1.08000 * 119.99408 * 359.97438 * 15 12 10 17 17 C 1.37873 * 120.00052 * 180.02562 * 15 12 10 18 18 N 1.31515 * 120.00044 * 359.97438 * 17 15 12 19 19 Si 1.86807 * 119.99753 * 179.97438 * 17 15 12 20 20 H 1.48501 * 109.47045 * 89.99950 * 19 17 15 21 21 H 1.48495 * 109.46802 * 209.99553 * 19 17 15 22 22 H 1.48492 * 109.47139 * 329.99875 * 19 17 15 23 23 H 1.09004 * 109.47481 * 287.51417 * 1 2 3 24 24 H 1.08999 * 109.47191 * 47.51906 * 1 2 3 25 25 H 1.09004 * 109.46594 * 167.52059 * 1 2 3 26 26 H 1.08998 * 109.47138 * 270.02432 * 5 4 3 27 27 H 1.08995 * 109.47578 * 30.02399 * 5 4 3 28 28 H 1.09004 * 109.47248 * 150.02604 * 5 4 3 29 29 H 1.08999 * 109.46944 * 270.04150 * 7 6 4 30 30 H 1.08997 * 109.46666 * 30.04171 * 7 6 4 31 31 H 1.09000 * 109.46601 * 150.03675 * 7 6 4 32 32 H 0.97000 * 119.99869 * 300.77216 * 9 8 6 33 33 H 1.08998 * 109.47594 * 179.97438 * 14 12 10 34 34 H 1.09000 * 109.47304 * 300.00329 * 14 12 10 35 35 H 1.09008 * 109.47134 * 59.99900 * 14 12 10 36 36 H 0.97001 * 119.99790 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2728 1.0608 0.0000 4 7 3.6089 0.6405 -0.0059 5 6 4.7868 1.5116 -0.0142 6 6 3.6193 -0.7176 -0.0031 7 6 4.8418 -1.5988 -0.0080 8 6 2.3282 -1.1369 0.0049 9 7 1.8912 -2.4750 0.0106 10 6 1.1151 -2.9262 1.0160 11 8 0.8643 -2.2055 1.9589 12 6 0.5591 -4.3261 0.9686 13 1 -0.0656 -4.4392 0.0825 14 6 1.7114 -5.3310 0.9116 15 6 -0.2688 -4.5798 2.2020 16 1 -0.3808 -3.8049 2.9459 17 6 -0.8824 -5.8014 2.3812 18 7 -0.7456 -6.7451 1.4755 19 14 -1.9081 -6.1160 3.9104 20 1 -3.3171 -5.7258 3.6504 21 1 -1.8500 -7.5588 4.2571 22 1 -1.3725 -5.3137 5.0393 23 1 -0.3634 0.3093 0.9800 24 1 -0.3633 0.6940 -0.7579 25 1 -0.3633 -1.0035 -0.2221 26 1 5.0733 1.7255 -1.0438 27 1 4.5526 2.4443 0.4989 28 1 5.6110 1.0132 0.4962 29 1 5.1312 -1.8128 -1.0368 30 1 5.6594 -1.0885 0.5009 31 1 4.6186 -2.5324 0.5085 32 1 2.1453 -3.0713 -0.7110 33 1 1.3093 -6.3435 0.8779 34 1 2.3099 -5.1473 0.0193 35 1 2.3363 -5.2180 1.7977 36 1 -1.1776 -7.6045 1.6014 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327736051.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:58:22 Heat of formation + Delta-G solvation = 30.005254 kcal Electronic energy + Delta-G solvation = -18681.284580 eV Core-core repulsion = 15781.023875 eV Total energy + Delta-G solvation = -2900.260706 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.15097 -38.49853 -34.34266 -33.69701 -33.54514 -31.15803 -30.12188 -29.25617 -26.50222 -25.15959 -25.05430 -22.67788 -20.18747 -19.63405 -18.88546 -16.93656 -16.06255 -16.03544 -15.48154 -14.98995 -14.41560 -14.08252 -13.50847 -13.31251 -13.27469 -13.10520 -12.79164 -12.56475 -12.44628 -12.12271 -11.76536 -11.73807 -11.47115 -10.98313 -10.75917 -10.68394 -10.54868 -10.22150 -9.93943 -9.15098 -8.93834 -8.82568 -8.58131 -8.30567 -7.64574 -6.00908 -4.03661 1.94892 2.55116 2.92444 3.35931 3.41611 3.49034 3.81269 4.05465 4.49759 4.64825 4.73560 5.01673 5.08935 5.20740 5.30982 5.32728 5.46403 5.59396 5.83325 5.99675 6.02430 6.19905 6.27055 6.34904 6.62665 6.71890 6.84022 6.94600 7.10232 7.43739 7.53420 7.77808 7.91226 8.02662 8.17943 8.49127 9.05782 9.32148 9.62224 11.06717 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.035558 B = 0.005541 C = 0.005148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.249091 B = 5051.971268 C = 5437.749461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.091 3.909 3 N -0.298 5.298 4 N -0.381 5.381 5 C 0.110 3.890 6 C 0.061 3.939 7 C -0.086 4.086 8 C 0.013 3.987 9 N -0.669 5.669 10 C 0.520 3.480 11 O -0.530 6.530 12 C 0.032 3.968 13 H 0.054 0.946 14 C -0.133 4.133 15 C -0.499 4.499 16 H 0.074 0.926 17 C 0.058 3.942 18 N -0.897 5.897 19 Si 0.899 3.101 20 H -0.280 1.280 21 H -0.288 1.288 22 H -0.273 1.273 23 H 0.078 0.922 24 H 0.067 0.933 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.400 0.600 33 H 0.093 0.907 34 H 0.012 0.988 35 H 0.031 0.969 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.019 9.961 -6.770 16.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.076 4.076 3 N -0.121 5.121 4 N -0.165 5.165 5 C -0.032 4.032 6 C -0.066 4.066 7 C -0.144 4.144 8 C -0.091 4.091 9 N -0.320 5.320 10 C 0.310 3.690 11 O -0.403 6.403 12 C 0.011 3.989 13 H 0.072 0.928 14 C -0.191 4.191 15 C -0.537 4.537 16 H 0.092 0.908 17 C -0.142 4.142 18 N -0.537 5.537 19 Si 0.727 3.273 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.198 1.198 23 H 0.097 0.903 24 H 0.086 0.914 25 H 0.095 0.905 26 H 0.088 0.912 27 H 0.105 0.895 28 H 0.101 0.899 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.105 0.895 32 H 0.236 0.764 33 H 0.112 0.888 34 H 0.031 0.969 35 H 0.050 0.950 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 10.904 11.629 -6.077 17.061 hybrid contribution -0.279 -1.312 0.414 1.404 sum 10.626 10.317 -5.663 15.856 Atomic orbital electron populations 1.20119 0.86471 1.03176 1.02716 1.22422 0.97144 0.89865 0.98195 1.77230 0.86060 1.22193 1.26616 1.48070 1.05392 1.03648 1.59418 1.21715 0.84033 0.94579 1.02832 1.20969 0.96657 0.84739 1.04269 1.20371 0.92569 0.98561 1.02893 1.17153 0.89890 0.86496 1.15574 1.43364 1.54103 1.07649 1.26928 1.22134 0.75876 0.90985 0.79977 1.90551 1.57748 1.58977 1.33063 1.18869 0.94787 0.85096 1.00196 0.92843 1.21755 0.96446 1.04118 0.96804 1.21143 1.28584 0.99156 1.04863 0.90765 1.24935 0.96544 0.95952 0.96765 1.69870 1.44379 1.04866 1.34541 0.86465 0.80488 0.77040 0.83310 1.20661 1.21349 1.19789 0.90344 0.91420 0.90492 0.91163 0.89512 0.89868 0.90463 0.91331 0.89495 0.76438 0.88803 0.96898 0.95003 0.93000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.12 9.64 36.00 0.35 -0.78 16 2 C 0.09 1.69 6.90 -82.26 -0.57 1.12 16 3 N -0.30 -5.26 12.56 33.74 0.42 -4.83 16 4 N -0.38 -5.59 4.04 -63.57 -0.26 -5.84 16 5 C 0.11 1.00 11.29 59.85 0.68 1.67 16 6 C 0.06 0.93 6.98 -81.72 -0.57 0.36 16 7 C -0.09 -0.93 10.08 36.01 0.36 -0.57 16 8 C 0.01 0.23 5.92 -83.88 -0.50 -0.27 16 9 N -0.67 -12.28 5.19 -10.04 -0.05 -12.33 16 10 C 0.52 11.88 6.20 -10.98 -0.07 11.81 16 11 O -0.53 -13.95 14.61 5.54 0.08 -13.87 16 12 C 0.03 0.78 2.64 -92.92 -0.25 0.53 16 13 H 0.05 1.35 8.14 -51.93 -0.42 0.93 16 14 C -0.13 -2.99 8.87 37.16 0.33 -2.66 16 15 C -0.50 -14.05 8.38 -34.44 -0.29 -14.33 16 16 H 0.07 2.22 6.75 -52.49 -0.35 1.86 16 17 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 18 N -0.90 -24.95 11.32 55.43 0.63 -24.33 16 19 Si 0.90 21.80 29.54 -169.99 -5.02 16.77 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 23 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 24 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.08 1.38 7.32 -51.93 -0.38 1.00 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.08 0.56 7.09 -51.93 -0.37 0.19 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.59 7.12 -51.93 -0.37 0.22 16 31 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.40 6.22 8.12 -40.82 -0.33 5.89 16 33 H 0.09 2.33 6.07 -51.93 -0.32 2.01 16 34 H 0.01 0.23 7.47 -51.93 -0.39 -0.16 16 35 H 0.03 0.71 8.14 -51.92 -0.42 0.29 16 36 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 304.16 15.07 4.58 4.58 Total: -1.00 -33.64 304.16 -5.25 -38.89 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -5.02 Total: 2.54 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -0.62 Total: -1.59 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: 0.74 Total: -47.33 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: 0.08 Total: -13.87 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -33.64 -5.25 -38.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327736051.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.900 kcal (2) G-P(sol) polarization free energy of solvation -33.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds