Wall clock time and date at job start Sun Mar 29 2020 23:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.34128 * 125.98799 * 2 1 4 4 C 1.30499 * 109.25848 * 180.02562 * 3 2 1 5 5 C 1.50702 * 125.65260 * 180.02562 * 4 3 2 6 6 N 1.46895 * 109.46901 * 275.02287 * 5 4 3 7 7 C 1.47965 * 111.00064 * 189.99915 * 6 5 4 8 8 C 1.53931 * 86.18239 * 222.42041 * 7 6 5 9 9 O 1.42894 * 113.73160 * 269.25510 * 8 7 6 10 10 C 1.50703 * 113.73518 * 138.07915 * 8 7 6 11 11 H 1.08000 * 119.99719 * 17.15762 * 10 8 7 12 12 C 1.37873 * 119.99883 * 197.15659 * 10 8 7 13 13 N 1.31515 * 119.99606 * 194.39693 * 12 10 8 14 14 Si 1.86800 * 120.00373 * 14.40572 * 12 10 8 15 15 H 1.48497 * 109.47317 * 180.02562 * 14 12 10 16 16 H 1.48504 * 109.46658 * 299.99749 * 14 12 10 17 17 H 1.48498 * 109.47245 * 59.99510 * 14 12 10 18 18 C 1.48191 * 111.07148 * 90.57075 * 6 5 4 19 19 N 1.35049 * 108.69664 * 0.26263 * 4 3 2 20 20 H 0.97001 * 126.39652 * 179.73833 * 19 4 3 21 21 C 1.34661 * 125.99127 * 180.02562 * 2 1 3 22 22 C 1.50704 * 126.59260 * 0.02562 * 21 2 1 23 23 H 1.08998 * 109.46996 * 89.97413 * 1 2 3 24 24 H 1.09001 * 109.46930 * 209.97544 * 1 2 3 25 25 H 1.09001 * 109.47224 * 329.98039 * 1 2 3 26 26 H 1.09001 * 109.46671 * 155.02551 * 5 4 3 27 27 H 1.09004 * 109.46904 * 35.02446 * 5 4 3 28 28 H 1.08994 * 113.75787 * 108.09572 * 7 6 5 29 29 H 1.09003 * 113.75723 * 336.73815 * 7 6 5 30 30 H 0.96707 * 114.00278 * 174.15409 * 9 8 7 31 31 H 0.96998 * 120.00288 * 354.87234 * 13 12 10 32 32 H 1.09008 * 113.75708 * 23.23197 * 18 6 5 33 33 H 1.09000 * 113.82289 * 251.80905 * 18 6 5 34 34 H 1.08995 * 109.47571 * 89.99779 * 22 21 2 35 35 H 1.09004 * 109.46796 * 210.00054 * 22 21 2 36 36 H 1.09004 * 109.46321 * 329.99008 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2952 1.0853 0.0000 4 6 3.5449 0.7096 -0.0006 5 6 4.7386 1.6295 -0.0002 6 7 5.0521 2.0254 -1.3796 7 6 6.3514 2.7301 -1.4468 8 6 5.6556 3.7056 -2.4131 9 8 5.7643 3.3294 -3.7873 10 6 6.0041 5.1516 -2.1706 11 1 6.8735 5.4062 -1.5826 12 6 5.2132 6.1494 -2.6995 13 7 5.6545 7.3878 -2.7372 14 14 3.5148 5.7425 -3.3623 15 1 2.8725 6.9807 -3.8718 16 1 3.6376 4.7583 -4.4676 17 1 2.6845 5.1649 -2.2751 18 6 4.3356 3.2675 -1.7534 19 7 3.5913 -0.6400 -0.0068 20 1 4.3914 -1.1885 -0.0121 21 6 2.2984 -1.0896 -0.0005 22 6 1.8473 -2.5275 -0.0017 23 1 -0.3633 0.0005 -1.0277 24 1 -0.3633 -0.8902 0.5135 25 1 -0.3634 0.8898 0.5141 26 1 5.5951 1.1130 0.4332 27 1 4.5129 2.5175 0.5903 28 1 7.1452 2.1444 -1.9101 29 1 6.6528 3.1863 -0.5038 30 1 5.2547 3.8886 -4.3898 31 1 6.5039 7.6127 -2.3265 32 1 4.0461 3.8812 -0.9002 33 1 3.5218 3.1103 -2.4613 34 1 1.7389 -2.8735 -1.0295 35 1 2.5876 -3.1409 0.5120 36 1 0.8892 -2.6080 0.5120 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329522306.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:14:17 Heat of formation + Delta-G solvation = 13.233158 kcal Electronic energy + Delta-G solvation = -18605.546398 eV Core-core repulsion = 15704.558400 eV Total energy + Delta-G solvation = -2900.987998 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.08948 -40.96316 -36.55849 -34.65430 -34.16313 -33.76628 -31.11593 -29.35738 -28.11099 -27.18379 -25.45830 -23.61486 -21.75358 -20.93473 -20.66535 -19.88306 -18.18561 -17.44278 -17.05594 -16.66127 -16.08880 -15.77724 -15.27772 -14.95599 -14.69169 -14.18688 -14.03264 -13.89095 -13.71201 -13.46888 -13.29931 -13.16386 -12.87727 -12.82347 -12.59339 -12.28145 -12.12844 -11.63666 -11.21520 -10.92880 -10.87836 -10.79788 -10.32229 -9.84029 -9.00904 -8.82216 -6.58892 1.02670 1.34343 1.47285 1.62465 2.02230 2.19424 2.33484 2.89301 2.99431 3.41194 3.75311 3.78435 3.98712 4.07796 4.12950 4.24435 4.31198 4.47404 4.52585 4.55155 4.70221 4.74558 4.81972 4.92050 5.03706 5.11190 5.14065 5.17578 5.29101 5.35041 5.67521 5.88079 5.89376 6.02917 6.40120 6.53713 6.98297 7.19404 7.24138 8.50288 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.030892 B = 0.005969 C = 0.005413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.173294 B = 4689.517150 C = 5171.217761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.039 4.039 3 N -0.524 5.524 4 C 0.212 3.788 5 C 0.101 3.899 6 N -0.470 5.470 7 C 0.035 3.965 8 C 0.187 3.813 9 O -0.570 6.570 10 C -0.622 4.622 11 H 0.034 0.966 12 C -0.005 4.005 13 N -0.923 5.923 14 Si 1.074 2.926 15 H -0.284 1.284 16 H -0.251 1.251 17 H -0.259 1.259 18 C -0.012 4.012 19 N -0.548 5.548 20 H 0.430 0.570 21 C -0.021 4.021 22 C -0.070 4.070 23 H 0.067 0.933 24 H 0.095 0.905 25 H 0.056 0.944 26 H 0.115 0.885 27 H 0.065 0.935 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.367 0.633 31 H 0.259 0.741 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.622 -20.185 6.627 22.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.168 4.168 3 N -0.245 5.245 4 C -0.053 4.053 5 C -0.029 4.029 6 N -0.193 5.193 7 C -0.094 4.094 8 C 0.146 3.854 9 O -0.379 6.379 10 C -0.660 4.660 11 H 0.052 0.948 12 C -0.206 4.206 13 N -0.558 5.558 14 Si 0.896 3.104 15 H -0.210 1.210 16 H -0.176 1.176 17 H -0.184 1.184 18 C -0.141 4.141 19 N -0.153 5.153 20 H 0.270 0.730 21 C -0.138 4.138 22 C -0.128 4.128 23 H 0.086 0.914 24 H 0.114 0.886 25 H 0.075 0.925 26 H 0.133 0.867 27 H 0.083 0.917 28 H 0.110 0.890 29 H 0.100 0.900 30 H 0.216 0.784 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.936 -19.788 5.780 22.468 hybrid contribution 2.205 0.277 1.167 2.511 sum -6.730 -19.511 6.947 21.777 Atomic orbital electron populations 1.20070 0.86190 1.03198 1.02421 1.21154 0.97910 0.88168 1.09565 1.70082 1.01152 1.32500 1.20776 1.22793 0.94315 0.82513 1.05640 1.21009 0.92927 0.96819 0.92152 1.68462 1.04082 1.26443 1.20346 1.23890 0.93219 0.93955 0.98302 1.20449 0.92244 0.92177 0.80522 1.86323 1.74112 1.59490 1.17931 1.22490 1.13168 0.92382 1.37973 0.94813 1.27039 1.06203 0.92821 0.94515 1.70943 1.22719 1.21480 1.40671 0.83720 0.72291 0.76253 0.78121 1.21013 1.17587 1.18428 1.24811 0.98392 0.90607 1.00297 1.43020 1.08937 1.07173 1.56160 0.72952 1.21625 0.83178 0.98750 1.10225 1.20347 1.02933 0.85769 1.03714 0.91392 0.88610 0.92451 0.86679 0.91677 0.89043 0.89965 0.78361 0.93205 0.91492 0.91776 0.90071 0.90047 0.88409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.33 10.22 71.24 0.73 -0.60 16 2 C -0.04 -1.15 7.09 41.39 0.29 -0.85 16 3 N -0.52 -19.08 11.25 -176.28 -1.98 -21.07 16 4 C 0.21 6.81 7.71 138.13 1.07 7.88 16 5 C 0.10 3.21 5.42 85.56 0.46 3.67 16 6 N -0.47 -18.11 6.14 -914.73 -5.62 -23.73 16 7 C 0.03 1.39 7.34 86.41 0.63 2.02 16 8 C 0.19 8.99 1.07 -10.90 -0.01 8.98 16 9 O -0.57 -27.76 13.47 -148.98 -2.01 -29.76 16 10 C -0.62 -34.95 9.04 25.60 0.23 -34.72 16 11 H 0.03 2.05 8.06 -2.91 -0.02 2.02 16 12 C 0.00 -0.27 5.44 84.65 0.46 0.19 16 13 N -0.92 -56.63 13.70 21.45 0.29 -56.34 16 14 Si 1.07 49.79 24.55 68.60 1.68 51.48 16 15 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 16 H -0.25 -10.33 5.81 99.48 0.58 -9.75 16 17 H -0.26 -11.54 6.48 99.48 0.64 -10.89 16 18 C -0.01 -0.52 4.73 86.36 0.41 -0.11 16 19 N -0.55 -13.33 6.15 -174.60 -1.07 -14.40 16 20 H 0.43 7.46 8.96 -92.71 -0.83 6.63 16 21 C -0.02 -0.50 7.24 40.95 0.30 -0.20 16 22 C -0.07 -0.88 10.22 71.24 0.73 -0.16 16 23 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 24 H 0.10 1.40 7.17 -2.39 -0.02 1.38 16 25 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.12 2.80 8.08 -2.39 -0.02 2.79 16 27 H 0.07 2.22 7.39 -2.38 -0.02 2.20 16 28 H 0.09 3.46 8.14 -2.39 -0.02 3.44 16 29 H 0.08 3.12 7.87 -2.39 -0.02 3.10 16 30 H 0.37 16.84 6.07 -74.05 -0.45 16.39 16 31 H 0.26 15.99 8.73 -92.71 -0.81 15.18 16 32 H 0.07 3.11 7.32 -2.38 -0.02 3.09 16 33 H 0.06 2.92 6.86 -2.39 -0.02 2.91 16 34 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.10 0.93 7.18 -2.38 -0.02 0.91 16 Total: -1.00 -72.67 294.57 -3.81 -76.48 By element: Atomic # 1 Polarization: 31.63 SS G_CDS: -0.40 Total: 31.23 kcal Atomic # 6 Polarization: -19.19 SS G_CDS: 5.30 Total: -13.89 kcal Atomic # 7 Polarization: -107.15 SS G_CDS: -8.38 Total: -115.53 kcal Atomic # 8 Polarization: -27.76 SS G_CDS: -2.01 Total: -29.76 kcal Atomic # 14 Polarization: 49.79 SS G_CDS: 1.68 Total: 51.48 kcal Total: -72.67 -3.81 -76.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329522306.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.713 kcal (2) G-P(sol) polarization free energy of solvation -72.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds