Wall clock time and date at job start Sun Mar 29 2020 23:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30273 * 126.28439 * 2 1 4 4 N 1.28664 * 109.38008 * 179.97438 * 3 2 1 5 5 C 1.30276 * 109.38306 * 0.02562 * 4 3 2 6 6 C 1.50701 * 126.27903 * 179.97438 * 5 4 3 7 7 N 1.46896 * 109.47043 * 90.02865 * 6 5 4 8 8 C 1.46850 * 111.00472 * 66.04154 * 7 6 5 9 9 C 1.53036 * 109.52384 * 185.84130 * 8 7 6 10 10 C 1.53114 * 109.27799 * 300.81924 * 9 8 7 11 11 C 1.53120 * 109.16161 * 57.65854 * 10 9 8 12 12 H 1.08998 * 109.50493 * 62.28140 * 11 10 9 13 13 C 1.50699 * 109.50204 * 182.40736 * 11 10 9 14 14 H 1.08000 * 120.00193 * 120.00336 * 13 11 10 15 15 C 1.37879 * 119.99808 * 299.99151 * 13 11 10 16 16 N 1.31517 * 119.99723 * 0.02562 * 15 13 11 17 17 Si 1.86805 * 120.00081 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46981 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.46760 * 120.00106 * 17 15 13 20 20 H 1.48494 * 109.47157 * 240.00681 * 17 15 13 21 21 C 1.46846 * 110.99998 * 190.25565 * 7 6 5 22 22 O 1.34356 * 107.43451 * 0.24379 * 5 4 3 23 23 H 1.08999 * 109.46798 * 89.97340 * 1 2 3 24 24 H 1.08996 * 109.46907 * 209.97513 * 1 2 3 25 25 H 1.09000 * 109.46916 * 329.97667 * 1 2 3 26 26 H 1.08999 * 109.47078 * 330.02112 * 6 5 4 27 27 H 1.09003 * 109.46796 * 210.02479 * 6 5 4 28 28 H 1.08995 * 109.45831 * 65.81919 * 8 7 6 29 29 H 1.08998 * 109.45719 * 305.85769 * 8 7 6 30 30 H 1.09004 * 109.50109 * 60.76189 * 9 8 7 31 31 H 1.08997 * 109.49831 * 180.87683 * 9 8 7 32 32 H 1.08995 * 109.52025 * 177.56309 * 10 9 8 33 33 H 1.09001 * 109.52508 * 297.68584 * 10 9 8 34 34 H 0.97006 * 119.99407 * 179.97438 * 16 15 13 35 35 H 1.08993 * 109.46639 * 54.13954 * 21 7 6 36 36 H 1.09010 * 109.45973 * 294.17120 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2780 1.0501 0.0000 4 7 3.5090 0.6760 0.0005 5 6 3.5654 -0.6255 0.0004 6 6 4.8177 -1.4639 0.0003 7 7 5.2241 -1.7370 1.3852 8 6 4.2366 -2.5841 2.0663 9 6 4.6165 -2.7273 3.5418 10 6 6.0107 -3.3514 3.6466 11 6 7.0118 -2.4753 2.8885 12 1 7.0543 -1.4886 3.3497 13 6 8.3762 -3.1134 2.9367 14 1 8.8751 -3.3912 2.0200 15 6 8.9876 -3.3423 4.1511 16 7 8.3799 -3.0043 5.2673 17 14 10.6792 -4.1326 4.2109 18 1 11.1428 -4.4150 2.8286 19 1 11.6341 -3.2085 4.8736 20 1 10.6056 -5.4021 4.9777 21 6 6.5625 -2.3394 1.4318 22 8 2.3022 -1.0832 -0.0058 23 1 -0.3633 0.0005 -1.0277 24 1 -0.3633 -0.8902 0.5134 25 1 -0.3633 0.8898 0.5142 26 1 5.6148 -0.9262 -0.5131 27 1 4.6246 -2.4053 -0.5141 28 1 4.2185 -3.5685 1.5986 29 1 3.2503 -2.1268 1.9878 30 1 4.6212 -1.7445 4.0133 31 1 3.8919 -3.3687 4.0434 32 1 6.3032 -3.4154 4.6946 33 1 5.9963 -4.3504 3.2108 34 1 8.8100 -3.1657 6.1217 35 1 7.2655 -1.7045 0.8927 36 1 6.5336 -3.3251 0.9672 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329911441.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:40:28 Heat of formation + Delta-G solvation = 8.557632 kcal Electronic energy + Delta-G solvation = -18552.623656 eV Core-core repulsion = 15651.432911 eV Total energy + Delta-G solvation = -2901.190744 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -45.26150 -39.93596 -37.22099 -35.98543 -34.28716 -33.18483 -31.75137 -29.99748 -27.43395 -26.94734 -24.45652 -23.68252 -23.31923 -22.63292 -20.43114 -18.70723 -18.39349 -18.04691 -16.91449 -16.32912 -16.25373 -15.85013 -15.41018 -15.05883 -14.64204 -14.38779 -14.03822 -13.88204 -13.59992 -13.49697 -13.42835 -13.01000 -12.90052 -12.85112 -12.61083 -12.49047 -11.99470 -11.87488 -11.76361 -11.42472 -11.02220 -10.68433 -10.53684 -10.38757 -9.33726 -8.06804 -6.20873 0.10431 1.23270 1.32842 1.42662 1.44991 1.55745 2.44344 2.80993 3.02812 3.21231 3.42663 3.84737 4.01441 4.13984 4.18052 4.36525 4.38964 4.45705 4.54888 4.57449 4.58648 4.67396 4.74547 4.82823 4.92516 5.00464 5.06901 5.13432 5.32691 5.47901 5.65140 5.86220 6.06881 6.08368 6.18054 6.41918 6.92207 7.26772 7.47567 8.98311 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.050579 B = 0.004589 C = 0.004418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.451166 B = 6100.454833 C = 6335.866950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.167 3.833 3 N -0.332 5.332 4 N -0.309 5.309 5 C 0.180 3.820 6 C 0.150 3.850 7 N -0.551 5.551 8 C 0.067 3.933 9 C -0.110 4.110 10 C -0.103 4.103 11 C 0.050 3.950 12 H -0.007 1.007 13 C -0.532 4.532 14 H 0.059 0.941 15 C 0.012 3.988 16 N -0.918 5.918 17 Si 0.955 3.045 18 H -0.264 1.264 19 H -0.284 1.284 20 H -0.282 1.282 21 C 0.084 3.916 22 O -0.230 6.230 23 H 0.123 0.877 24 H 0.113 0.887 25 H 0.117 0.883 26 H 0.130 0.870 27 H 0.091 0.909 28 H 0.046 0.954 29 H 0.065 0.935 30 H 0.041 0.959 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.032 0.968 34 H 0.259 0.741 35 H 0.070 0.930 36 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.219 0.043 -10.973 18.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.044 4.044 3 N -0.179 5.179 4 N -0.155 5.155 5 C -0.033 4.033 6 C 0.021 3.979 7 N -0.278 5.278 8 C -0.060 4.060 9 C -0.148 4.148 10 C -0.141 4.141 11 C 0.031 3.969 12 H 0.011 0.989 13 C -0.570 4.570 14 H 0.077 0.923 15 C -0.186 4.186 16 N -0.557 5.557 17 Si 0.781 3.219 18 H -0.188 1.188 19 H -0.210 1.210 20 H -0.207 1.207 21 C -0.042 4.042 22 O -0.110 6.110 23 H 0.141 0.859 24 H 0.131 0.869 25 H 0.136 0.864 26 H 0.148 0.852 27 H 0.109 0.891 28 H 0.064 0.936 29 H 0.083 0.917 30 H 0.060 0.940 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.051 0.949 34 H 0.068 0.932 35 H 0.089 0.911 36 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -14.799 1.732 -10.557 18.261 hybrid contribution 0.757 -2.030 0.193 2.175 sum -14.042 -0.297 -10.364 17.455 Atomic orbital electron populations 1.20727 0.76252 1.07244 1.07088 1.29140 0.99522 0.78823 0.96881 1.74324 0.96289 1.27293 1.19976 1.74323 1.12910 1.10522 1.17792 1.28065 0.85462 0.91279 0.98500 1.20615 0.87885 0.97662 0.91691 1.61834 1.03773 1.48730 1.13441 1.22045 0.94056 0.94988 0.94922 1.21570 0.97789 1.00083 0.95314 1.21464 0.93229 0.97205 1.02247 1.18618 0.93276 0.94276 0.90709 0.98887 1.21541 1.02730 1.40121 0.92632 0.92320 1.25737 1.01195 0.96199 0.95480 1.70058 1.39155 1.48682 0.97837 0.85547 0.80023 0.77968 0.78344 1.18788 1.21046 1.20744 1.22048 0.86771 0.96436 0.98965 1.84809 1.17494 1.38759 1.69901 0.85914 0.86854 0.86433 0.85230 0.89122 0.93584 0.91707 0.94020 0.90956 0.92396 0.94927 0.93174 0.91136 0.94496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.56 10.51 71.24 0.75 0.19 16 2 C 0.17 3.94 8.48 88.34 0.75 4.69 16 3 N -0.33 -10.45 12.22 -165.49 -2.02 -12.47 16 4 N -0.31 -10.80 12.22 -165.51 -2.02 -12.83 16 5 C 0.18 5.42 7.04 88.34 0.62 6.04 16 6 C 0.15 4.16 5.59 85.56 0.48 4.63 16 7 N -0.55 -19.43 4.65 -900.93 -4.19 -23.62 16 8 C 0.07 2.24 5.31 86.32 0.46 2.70 16 9 C -0.11 -4.24 6.09 30.64 0.19 -4.05 16 10 C -0.10 -4.85 5.02 30.67 0.15 -4.70 16 11 C 0.05 2.50 2.27 -11.49 -0.03 2.47 16 12 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 13 C -0.53 -28.73 8.56 25.60 0.22 -28.51 16 14 H 0.06 3.06 7.74 -2.91 -0.02 3.03 16 15 C 0.01 0.68 5.30 84.65 0.45 1.13 16 16 N -0.92 -53.27 11.35 21.45 0.24 -53.02 16 17 Si 0.96 43.20 29.54 68.60 2.03 45.22 16 18 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 19 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 20 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 21 C 0.08 3.33 4.68 86.33 0.40 3.74 16 22 O -0.23 -6.05 10.14 -3.63 -0.04 -6.09 16 23 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 24 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.13 3.29 7.98 -2.39 -0.02 3.28 16 27 H 0.09 2.02 8.12 -2.39 -0.02 2.00 16 28 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.06 2.01 6.54 -2.39 -0.02 2.00 16 30 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 32 H 0.06 3.12 6.15 -2.39 -0.01 3.11 16 33 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.26 14.32 8.31 -92.70 -0.77 13.55 16 35 H 0.07 2.70 8.01 -2.39 -0.02 2.69 16 36 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 Total: -1.00 -68.70 296.43 -0.49 -69.19 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: 1.06 Total: 5.28 kcal Atomic # 6 Polarization: -16.11 SS G_CDS: 4.44 Total: -11.66 kcal Atomic # 7 Polarization: -93.96 SS G_CDS: -7.99 Total: -101.94 kcal Atomic # 8 Polarization: -6.05 SS G_CDS: -0.04 Total: -6.09 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.22 kcal Total: -68.70 -0.49 -69.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329911441.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.751 kcal (2) G-P(sol) polarization free energy of solvation -68.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds