Wall clock time and date at job start Sun Mar 29 2020 23:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 109.46928 * 2 1 4 4 N 1.34967 * 126.06306 * 264.97029 * 3 2 1 5 5 H 0.96997 * 125.98325 * 0.02562 * 4 3 2 6 6 N 1.40076 * 108.04497 * 179.80748 * 4 3 2 7 7 C 1.31223 * 108.16963 * 0.36389 * 6 4 3 8 8 N 1.40160 * 125.97433 * 179.90893 * 7 6 4 9 9 C 1.34778 * 119.99865 * 359.68749 * 8 7 6 10 10 O 1.21288 * 120.00190 * 0.02562 * 9 8 7 11 11 C 1.50697 * 119.99637 * 180.02562 * 9 8 7 12 12 H 1.09000 * 109.47374 * 59.99792 * 11 9 8 13 13 C 1.53006 * 109.47239 * 299.99654 * 11 9 8 14 14 C 1.50699 * 109.46956 * 179.97438 * 11 9 8 15 15 H 1.08003 * 120.00271 * 359.97438 * 14 11 9 16 16 C 1.37879 * 120.00161 * 179.97438 * 14 11 9 17 17 N 1.31509 * 119.99895 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 120.00268 * 179.97438 * 16 14 11 19 19 H 1.48498 * 109.46680 * 60.00301 * 18 16 14 20 20 H 1.48492 * 109.47298 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.46944 * 300.00817 * 18 16 14 22 22 C 1.35231 * 126.07233 * 84.99878 * 3 2 1 23 23 C 1.50704 * 126.06764 * 359.97250 * 22 3 2 24 24 H 1.08999 * 109.47455 * 300.00464 * 1 2 3 25 25 H 1.09000 * 109.47178 * 60.00457 * 1 2 3 26 26 H 1.09007 * 109.46935 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47455 * 239.99536 * 2 1 3 28 28 H 1.09000 * 109.46721 * 119.99268 * 2 1 3 29 29 H 0.96994 * 119.99662 * 179.68848 * 8 7 6 30 30 H 1.09001 * 109.47002 * 60.00070 * 13 11 9 31 31 H 1.08993 * 109.46955 * 180.02562 * 13 11 9 32 32 H 1.09000 * 109.47050 * 300.00336 * 13 11 9 33 33 H 0.97006 * 120.00358 * 179.97438 * 17 16 14 34 34 H 1.08993 * 109.47588 * 269.98234 * 23 22 3 35 35 H 1.09004 * 109.46776 * 29.98197 * 23 22 3 36 36 H 1.08997 * 109.47006 * 149.97263 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.3873 2.1381 -1.0868 5 1 2.3636 1.8293 -2.0060 6 7 2.7912 3.4081 -0.6556 7 6 2.6889 3.4480 0.6520 8 7 2.9997 4.5435 1.4691 9 6 3.4555 5.6865 0.9193 10 8 3.5962 5.7672 -0.2827 11 6 3.7902 6.8641 1.7979 12 1 4.5719 6.5810 2.5028 13 6 2.5411 7.2970 2.5683 14 6 4.2749 8.0068 0.9433 15 1 4.3351 7.8916 -0.1289 16 6 4.6417 9.1994 1.5301 17 7 4.5690 9.3395 2.8357 18 14 5.2432 10.6155 0.4708 19 1 4.1792 11.0011 -0.4907 20 1 5.5730 11.7760 1.3365 21 1 6.4562 10.1948 -0.2757 22 6 2.2078 2.2033 1.0889 23 6 1.9353 1.8094 2.5178 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 2.8868 4.4790 2.4303 30 1 2.1909 6.4704 3.1865 31 1 2.7831 8.1490 3.2035 32 1 1.7594 7.5801 1.8634 33 1 4.8274 10.1784 3.2486 34 1 0.9048 2.0563 2.7726 35 1 2.0917 0.7371 2.6351 36 1 2.6126 2.3498 3.1791 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331217830.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:50:35 Heat of formation + Delta-G solvation = 22.977655 kcal Electronic energy + Delta-G solvation = -18305.594728 eV Core-core repulsion = 15405.029282 eV Total energy + Delta-G solvation = -2900.565445 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.20878 -38.66630 -34.62748 -33.87052 -33.70633 -31.61119 -30.45435 -29.14362 -26.30116 -25.12711 -23.83073 -23.26916 -20.88141 -19.65967 -18.64305 -17.29434 -16.30619 -15.86186 -15.36701 -15.10906 -14.67730 -14.36371 -13.98544 -13.57826 -13.03812 -12.93105 -12.74644 -12.64317 -12.34387 -12.26871 -11.56787 -11.48715 -11.31441 -10.98089 -10.78599 -10.67379 -10.47646 -10.17359 -10.12367 -9.94994 -8.98284 -8.60985 -8.34135 -8.30890 -7.83394 -6.01799 -4.04864 2.06737 2.89204 2.92244 3.39095 3.40802 3.47084 3.82259 3.97266 4.48606 4.57513 4.74497 5.01947 5.08193 5.30042 5.31752 5.37760 5.54396 5.57858 5.77210 5.82693 5.87479 5.93569 6.15073 6.28695 6.46630 6.61676 6.82664 6.91300 7.28651 7.40581 7.51527 7.70709 7.81845 8.03819 8.21939 8.49102 9.03781 9.19965 9.60575 11.05883 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.046793 B = 0.004686 C = 0.004380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.241328 B = 5973.249883 C = 6390.445252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.059 4.059 3 C 0.095 3.905 4 N -0.481 5.481 5 H 0.435 0.565 6 N -0.275 5.275 7 C 0.312 3.688 8 N -0.651 5.651 9 C 0.509 3.491 10 O -0.496 6.496 11 C 0.034 3.966 12 H 0.056 0.944 13 C -0.134 4.134 14 C -0.502 4.502 15 H 0.074 0.926 16 C 0.059 3.941 17 N -0.897 5.897 18 Si 0.902 3.098 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.276 1.276 22 C -0.261 4.261 23 C -0.069 4.069 24 H 0.062 0.938 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.413 0.587 30 H 0.013 0.987 31 H 0.095 0.905 32 H 0.032 0.968 33 H 0.262 0.738 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.418 -18.525 0.203 19.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.098 4.098 3 C -0.034 4.034 4 N -0.190 5.190 5 H 0.279 0.721 6 N -0.105 5.105 7 C 0.054 3.946 8 N -0.304 5.304 9 C 0.298 3.702 10 O -0.365 6.365 11 C 0.013 3.987 12 H 0.074 0.926 13 C -0.192 4.192 14 C -0.541 4.541 15 H 0.092 0.908 16 C -0.141 4.141 17 N -0.536 5.536 18 Si 0.730 3.270 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.202 1.202 22 C -0.275 4.275 23 C -0.127 4.127 24 H 0.082 0.918 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.092 0.908 28 H 0.107 0.893 29 H 0.250 0.750 30 H 0.032 0.968 31 H 0.114 0.886 32 H 0.051 0.949 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.906 -17.539 -1.550 18.913 hybrid contribution 0.048 0.158 0.186 0.249 sum -6.858 -17.380 -1.365 18.734 Atomic orbital electron populations 1.21734 0.94042 1.01924 1.02780 1.20187 0.96477 0.89545 1.03625 1.20662 1.00123 0.95087 0.87536 1.46151 1.54372 1.10383 1.08088 0.72108 1.78126 1.25722 0.96622 1.10012 1.19417 0.96802 0.88403 0.89938 1.43738 1.66390 1.10627 1.09604 1.22399 0.74480 0.82899 0.90412 1.90628 1.48743 1.81283 1.15821 1.18890 0.96043 0.89457 0.94287 0.92628 1.21773 0.96526 1.01385 0.99525 1.21097 1.42655 0.95910 0.94392 0.90768 1.24931 0.95505 0.98602 0.95086 1.69855 1.48656 1.26135 1.08956 0.86484 0.79417 0.81063 0.80061 1.20178 1.21358 1.20173 1.19447 1.17754 0.93766 0.96502 1.20010 1.01125 1.00835 0.90708 0.91843 0.92663 0.91970 0.90843 0.89277 0.74980 0.96796 0.88608 0.94857 0.92869 0.92239 0.92106 0.92114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.89 37.16 0.37 -0.68 16 2 C -0.06 -0.46 6.21 -27.88 -0.17 -0.64 16 3 C 0.10 1.19 6.45 -82.28 -0.53 0.66 16 4 N -0.48 -6.99 7.35 33.46 0.25 -6.74 16 5 H 0.44 4.81 8.96 -182.62 -1.64 3.17 16 6 N -0.27 -5.59 10.93 31.44 0.34 -5.25 16 7 C 0.31 5.91 7.78 -154.38 -1.20 4.71 16 8 N -0.65 -12.68 5.34 -11.13 -0.06 -12.74 16 9 C 0.51 12.33 7.12 -10.99 -0.08 12.26 16 10 O -0.50 -13.84 14.18 5.55 0.08 -13.76 16 11 C 0.03 0.87 2.64 -92.92 -0.25 0.63 16 12 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 13 C -0.13 -3.10 8.87 37.16 0.33 -2.77 16 14 C -0.50 -14.50 8.38 -34.44 -0.29 -14.79 16 15 H 0.07 2.27 6.75 -52.48 -0.35 1.92 16 16 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 17 N -0.90 -25.24 11.32 55.43 0.63 -24.61 16 18 Si 0.90 22.15 29.54 -169.99 -5.02 17.13 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 C -0.26 -3.76 6.12 -104.87 -0.64 -4.40 16 23 C -0.07 -0.73 10.00 36.01 0.36 -0.37 16 24 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.09 0.60 7.30 -51.93 -0.38 0.22 16 29 H 0.41 6.61 7.63 -40.82 -0.31 6.30 16 30 H 0.01 0.25 7.56 -51.93 -0.39 -0.14 16 31 H 0.10 2.41 6.07 -51.93 -0.32 2.10 16 32 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.52 7.25 -51.93 -0.38 0.14 16 36 H 0.06 0.63 7.70 -51.93 -0.40 0.23 16 LS Contribution 303.27 15.07 4.57 4.57 Total: -1.00 -34.62 303.27 -7.67 -42.29 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -6.26 Total: 2.93 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: -2.20 Total: -3.82 kcal Atomic # 7 Polarization: -50.49 SS G_CDS: 1.16 Total: -49.34 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: 0.08 Total: -13.76 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -34.62 -7.67 -42.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331217830.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.272 kcal (2) G-P(sol) polarization free energy of solvation -34.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds