Wall clock time and date at job start Sun Mar 29 2020 23:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 109.46928 * 2 1 4 4 N 1.34967 * 126.06306 * 264.97029 * 3 2 1 5 5 H 0.96997 * 125.98325 * 0.02562 * 4 3 2 6 6 N 1.40076 * 108.04497 * 179.80748 * 4 3 2 7 7 C 1.31223 * 108.16963 * 0.36389 * 6 4 3 8 8 N 1.40160 * 125.97433 * 179.90893 * 7 6 4 9 9 C 1.34778 * 119.99865 * 359.68749 * 8 7 6 10 10 O 1.21288 * 120.00190 * 0.02562 * 9 8 7 11 11 C 1.50697 * 119.99637 * 180.02562 * 9 8 7 12 12 H 1.09000 * 109.47374 * 59.99792 * 11 9 8 13 13 C 1.53006 * 109.47239 * 299.99654 * 11 9 8 14 14 C 1.50699 * 109.46956 * 179.97438 * 11 9 8 15 15 H 1.08003 * 120.00271 * 359.97438 * 14 11 9 16 16 C 1.37879 * 120.00161 * 179.97438 * 14 11 9 17 17 N 1.31509 * 119.99895 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 120.00268 * 179.97438 * 16 14 11 19 19 H 1.48498 * 109.46680 * 60.00301 * 18 16 14 20 20 H 1.48492 * 109.47298 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.46944 * 300.00817 * 18 16 14 22 22 C 1.35231 * 126.07233 * 84.99878 * 3 2 1 23 23 C 1.50704 * 126.06764 * 359.97250 * 22 3 2 24 24 H 1.08999 * 109.47455 * 300.00464 * 1 2 3 25 25 H 1.09000 * 109.47178 * 60.00457 * 1 2 3 26 26 H 1.09007 * 109.46935 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47455 * 239.99536 * 2 1 3 28 28 H 1.09000 * 109.46721 * 119.99268 * 2 1 3 29 29 H 0.96994 * 119.99662 * 179.68848 * 8 7 6 30 30 H 1.09001 * 109.47002 * 60.00070 * 13 11 9 31 31 H 1.08993 * 109.46955 * 180.02562 * 13 11 9 32 32 H 1.09000 * 109.47050 * 300.00336 * 13 11 9 33 33 H 0.97006 * 120.00358 * 179.97438 * 17 16 14 34 34 H 1.08993 * 109.47588 * 269.98234 * 23 22 3 35 35 H 1.09004 * 109.46776 * 29.98197 * 23 22 3 36 36 H 1.08997 * 109.47006 * 149.97263 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.3873 2.1381 -1.0868 5 1 2.3636 1.8293 -2.0060 6 7 2.7912 3.4081 -0.6556 7 6 2.6889 3.4480 0.6520 8 7 2.9997 4.5435 1.4691 9 6 3.4555 5.6865 0.9193 10 8 3.5962 5.7672 -0.2827 11 6 3.7902 6.8641 1.7979 12 1 4.5719 6.5810 2.5028 13 6 2.5411 7.2970 2.5683 14 6 4.2749 8.0068 0.9433 15 1 4.3351 7.8916 -0.1289 16 6 4.6417 9.1994 1.5301 17 7 4.5690 9.3395 2.8357 18 14 5.2432 10.6155 0.4708 19 1 4.1792 11.0011 -0.4907 20 1 5.5730 11.7760 1.3365 21 1 6.4562 10.1948 -0.2757 22 6 2.2078 2.2033 1.0889 23 6 1.9353 1.8094 2.5178 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 2.8868 4.4790 2.4303 30 1 2.1909 6.4704 3.1865 31 1 2.7831 8.1490 3.2035 32 1 1.7594 7.5801 1.8634 33 1 4.8274 10.1784 3.2486 34 1 0.9048 2.0563 2.7726 35 1 2.0917 0.7371 2.6351 36 1 2.6126 2.3498 3.1791 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331217830.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:50:35 Heat of formation + Delta-G solvation = -0.849778 kcal Electronic energy + Delta-G solvation = -18306.627963 eV Core-core repulsion = 15405.029282 eV Total energy + Delta-G solvation = -2901.598680 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.44332 -40.45723 -36.05623 -35.79324 -34.87100 -32.98479 -32.12973 -30.40297 -27.26216 -27.19892 -25.34056 -24.34413 -22.48782 -21.09387 -20.00389 -18.58462 -18.28724 -17.44078 -17.04228 -16.48475 -16.33646 -15.65997 -15.24639 -14.95963 -14.50056 -14.48981 -13.81455 -13.57457 -13.55329 -13.27058 -13.02358 -12.96407 -12.75326 -12.61096 -12.27996 -12.19900 -12.01858 -11.90793 -11.84373 -11.43829 -11.08091 -10.62170 -10.34568 -9.63520 -9.10134 -8.16818 -6.27209 0.92816 1.40315 1.41782 1.44390 1.50319 1.67966 2.28047 2.39263 2.55418 3.12851 3.69461 3.89350 4.15535 4.28104 4.43261 4.45078 4.64314 4.72346 4.83978 4.91600 4.93619 4.98478 5.02007 5.08609 5.12274 5.34372 5.35676 5.46417 5.47273 5.71502 5.82784 5.94747 6.12960 6.31703 6.58257 6.78214 6.98399 7.35750 7.47084 8.89026 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.046793 B = 0.004686 C = 0.004380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.241328 B = 5973.249883 C = 6390.445252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.055 4.055 3 C 0.113 3.887 4 N -0.473 5.473 5 H 0.448 0.552 6 N -0.340 5.340 7 C 0.282 3.718 8 N -0.635 5.635 9 C 0.512 3.488 10 O -0.543 6.543 11 C 0.032 3.968 12 H 0.050 0.950 13 C -0.121 4.121 14 C -0.534 4.534 15 H 0.045 0.955 16 C 0.024 3.976 17 N -0.907 5.907 18 Si 0.956 3.044 19 H -0.278 1.278 20 H -0.271 1.271 21 H -0.278 1.278 22 C -0.270 4.270 23 C -0.068 4.068 24 H 0.056 0.944 25 H 0.044 0.956 26 H 0.086 0.914 27 H 0.094 0.906 28 H 0.111 0.889 29 H 0.429 0.571 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.020 0.980 33 H 0.267 0.733 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.309 -20.712 1.111 22.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.094 4.094 3 C -0.017 4.017 4 N -0.184 5.184 5 H 0.294 0.706 6 N -0.171 5.171 7 C 0.025 3.975 8 N -0.288 5.288 9 C 0.301 3.699 10 O -0.416 6.416 11 C 0.011 3.989 12 H 0.068 0.932 13 C -0.179 4.179 14 C -0.572 4.572 15 H 0.064 0.936 16 C -0.176 4.176 17 N -0.546 5.546 18 Si 0.781 3.219 19 H -0.203 1.203 20 H -0.195 1.195 21 H -0.203 1.203 22 C -0.283 4.283 23 C -0.126 4.126 24 H 0.075 0.925 25 H 0.063 0.937 26 H 0.105 0.895 27 H 0.113 0.887 28 H 0.129 0.871 29 H 0.269 0.731 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.040 0.960 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.107 0.893 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.816 -19.764 -0.596 21.262 hybrid contribution 0.289 0.696 -0.126 0.764 sum -7.527 -19.068 -0.722 20.512 Atomic orbital electron populations 1.21730 0.93219 1.03323 1.02004 1.20413 0.96907 0.86295 1.05776 1.21464 0.97548 0.96654 0.86021 1.46117 1.53763 1.09050 1.09475 0.70630 1.77958 1.27704 0.99980 1.11458 1.19738 0.98325 0.89416 0.89993 1.43235 1.65214 1.09856 1.10460 1.22081 0.74418 0.83910 0.89509 1.90598 1.51104 1.82392 1.17496 1.18816 0.96737 0.89364 0.94021 0.93242 1.21589 0.95090 1.02144 0.99041 1.21214 1.44420 0.97986 0.93583 0.93642 1.25548 0.95347 1.00364 0.96335 1.69920 1.48290 1.26804 1.09621 0.85654 0.78631 0.78797 0.78792 1.20341 1.19519 1.20345 1.19891 1.17485 0.91948 0.99003 1.20124 1.01724 1.02615 0.88101 0.92454 0.93692 0.89487 0.88727 0.87099 0.73108 0.92534 0.90511 0.96037 0.92395 0.91213 0.89323 0.92097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.89 71.98 0.71 -0.82 16 2 C -0.06 -0.64 6.21 29.85 0.19 -0.46 16 3 C 0.11 2.56 6.45 41.38 0.27 2.83 16 4 N -0.47 -13.39 7.35 -48.04 -0.35 -13.74 16 5 H 0.45 9.54 8.96 -213.34 -1.91 7.63 16 6 N -0.34 -14.13 10.93 -54.45 -0.59 -14.72 16 7 C 0.28 10.67 7.78 133.32 1.04 11.71 16 8 N -0.64 -24.92 5.34 -307.51 -1.64 -26.56 16 9 C 0.51 25.60 7.12 87.66 0.62 26.22 16 10 O -0.54 -31.81 14.18 -3.05 -0.04 -31.85 16 11 C 0.03 1.66 2.64 -12.29 -0.03 1.62 16 12 H 0.05 2.60 8.14 -2.39 -0.02 2.58 16 13 C -0.12 -5.58 8.87 71.98 0.64 -4.94 16 14 C -0.53 -31.86 8.38 25.60 0.21 -31.65 16 15 H 0.05 2.93 6.75 -2.91 -0.02 2.91 16 16 C 0.02 1.35 5.30 84.66 0.45 1.80 16 17 N -0.91 -51.15 11.32 21.45 0.24 -50.90 16 18 Si 0.96 45.88 29.54 68.60 2.03 47.90 16 19 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 20 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 21 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 22 C -0.27 -7.30 6.12 -20.03 -0.12 -7.42 16 23 C -0.07 -1.23 10.00 71.24 0.71 -0.52 16 24 H 0.06 0.69 8.14 -2.39 -0.02 0.68 16 25 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.09 0.54 8.14 -2.38 -0.02 0.52 16 27 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.11 0.91 7.30 -2.39 -0.02 0.89 16 29 H 0.43 13.41 7.63 -92.71 -0.71 12.70 16 30 H 0.06 2.07 7.56 -2.39 -0.02 2.05 16 31 H 0.08 3.87 6.07 -2.39 -0.01 3.85 16 32 H 0.02 0.99 8.14 -2.39 -0.02 0.98 16 33 H 0.27 14.21 8.31 -92.70 -0.77 13.44 16 34 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.09 1.11 7.25 -2.39 -0.02 1.09 16 36 H 0.06 1.10 7.70 -2.39 -0.02 1.08 16 Total: -1.00 -78.19 303.27 2.81 -75.38 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -1.51 Total: 16.12 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: 4.69 Total: -1.63 kcal Atomic # 7 Polarization: -103.57 SS G_CDS: -2.35 Total: -105.92 kcal Atomic # 8 Polarization: -31.81 SS G_CDS: -0.04 Total: -31.85 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.90 kcal Total: -78.19 2.81 -75.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331217830.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.532 kcal (2) G-P(sol) polarization free energy of solvation -78.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds