Wall clock time and date at job start Sun Mar 29 2020 22:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30841 * 125.90347 * 2 1 4 4 N 1.40077 * 108.20904 * 180.02562 * 3 2 1 5 5 C 1.46506 * 126.03484 * 179.97438 * 4 3 2 6 6 C 1.34948 * 107.92645 * 0.26143 * 4 3 2 7 7 C 1.35318 * 107.74290 * 359.57821 * 6 4 3 8 8 C 1.50700 * 126.03840 * 180.16409 * 7 6 4 9 9 C 1.50695 * 109.47145 * 265.30936 * 8 7 6 10 10 O 1.21292 * 119.99919 * 359.97438 * 9 8 7 11 11 N 1.34774 * 120.00283 * 179.97438 * 9 8 7 12 12 C 1.46509 * 120.00295 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47263 * 179.97438 * 12 11 9 14 14 C 1.50693 * 109.47029 * 180.02562 * 13 12 11 15 15 H 1.08005 * 120.00201 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99845 * 180.02562 * 14 13 12 17 17 N 1.31512 * 119.99893 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99811 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47290 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47500 * 119.99772 * 18 16 14 21 21 H 1.48504 * 109.47084 * 240.00006 * 18 16 14 22 22 H 1.08997 * 109.47164 * 89.98038 * 1 2 3 23 23 H 1.09002 * 109.46768 * 209.97863 * 1 2 3 24 24 H 1.08999 * 109.47145 * 329.97571 * 1 2 3 25 25 H 1.08999 * 109.46871 * 90.02616 * 5 4 3 26 26 H 1.08994 * 109.46947 * 210.02323 * 5 4 3 27 27 H 1.08997 * 109.47271 * 330.02840 * 5 4 3 28 28 H 1.08002 * 126.12338 * 179.73269 * 6 4 3 29 29 H 1.09003 * 109.47210 * 25.30474 * 8 7 6 30 30 H 1.09000 * 109.47322 * 145.30308 * 8 7 6 31 31 H 0.96998 * 119.99882 * 359.97438 * 11 9 8 32 32 H 1.09003 * 109.47114 * 300.00241 * 12 11 9 33 33 H 1.08995 * 109.46665 * 60.00014 * 12 11 9 34 34 H 1.08996 * 109.46603 * 300.00220 * 13 12 11 35 35 H 1.09005 * 109.46752 * 60.00185 * 13 12 11 36 36 H 0.96999 * 119.99805 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2743 1.0598 0.0000 4 7 3.6088 0.6341 -0.0006 5 6 4.7899 1.5008 -0.0013 6 6 3.6142 -0.7154 -0.0068 7 6 2.3271 -1.1330 -0.0006 8 6 1.8599 -2.5658 -0.0007 9 6 1.5860 -3.0047 -1.4160 10 8 1.7532 -2.2301 -2.3343 11 7 1.1551 -4.2579 -1.6616 12 6 0.8883 -4.6844 -3.0375 13 6 0.4152 -6.1395 -3.0378 14 6 0.1414 -6.5784 -4.4532 15 1 0.2895 -5.8884 -5.2708 16 6 -0.2993 -7.8605 -4.7043 17 7 -0.4810 -8.7002 -3.7086 18 14 -0.6380 -8.4047 -6.4588 19 1 -0.3584 -7.2810 -7.3884 20 1 0.2357 -9.5568 -6.7972 21 1 -2.0614 -8.8088 -6.5856 22 1 -0.3633 0.0004 -1.0276 23 1 -0.3633 -0.8902 0.5135 24 1 -0.3633 0.8898 0.5142 25 1 5.0836 1.7155 1.0262 26 1 5.6089 0.9983 -0.5158 27 1 4.5560 2.4334 -0.5147 28 1 4.4892 -1.3485 -0.0129 29 1 2.6329 -3.2001 0.4332 30 1 0.9471 -2.6503 0.5891 31 1 1.0217 -4.8774 -0.9272 32 1 0.1148 -4.0504 -3.4709 33 1 1.8007 -4.5993 -3.6276 34 1 1.1891 -6.7731 -2.6045 35 1 -0.4971 -6.2250 -2.4475 36 1 -0.7907 -9.6023 -3.8853 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001435874232.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:40 Heat of formation + Delta-G solvation = 22.550317 kcal Electronic energy + Delta-G solvation = -17618.668010 eV Core-core repulsion = 14718.084034 eV Total energy + Delta-G solvation = -2900.583976 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.28037 -38.92757 -34.82703 -34.14052 -32.81316 -31.94002 -29.92038 -29.48231 -27.56198 -25.17513 -24.21672 -21.22477 -20.75002 -20.14992 -19.30569 -16.76594 -16.68715 -16.20305 -15.42339 -15.13038 -14.95521 -14.42869 -14.22721 -13.65926 -13.57185 -13.18905 -12.94414 -12.89364 -12.41473 -12.23774 -12.14134 -12.08734 -11.63288 -11.16764 -11.02732 -10.61338 -10.47427 -10.29168 -9.73451 -9.43144 -9.19274 -9.12922 -8.49884 -8.29665 -8.28550 -6.08374 -4.10806 1.88667 2.48452 2.74069 3.15312 3.29022 3.36612 3.41878 3.94358 4.39717 4.44258 4.75027 4.93967 4.95998 5.09564 5.19016 5.26444 5.28794 5.32291 5.48420 5.63171 5.73311 5.92797 6.02999 6.10471 6.39812 6.40598 6.71145 6.78657 6.99860 7.01850 7.54992 7.64673 7.74482 7.90704 8.12791 8.31019 8.79641 8.95884 9.54014 11.03279 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.046250 B = 0.003477 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.258949 B = 8050.895686 C = 8149.454649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.092 3.908 3 N -0.303 5.303 4 N -0.381 5.381 5 C 0.106 3.894 6 C 0.065 3.935 7 C -0.211 4.211 8 C -0.063 4.063 9 C 0.503 3.497 10 O -0.544 6.544 11 N -0.726 5.726 12 C 0.123 3.877 13 C 0.012 3.988 14 C -0.520 4.520 15 H 0.059 0.941 16 C 0.058 3.942 17 N -0.894 5.894 18 Si 0.896 3.104 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.283 1.283 22 H 0.079 0.921 23 H 0.076 0.924 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.171 0.829 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.397 0.603 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.022 0.978 35 H 0.022 0.978 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.722 14.858 11.915 20.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.074 4.074 3 N -0.126 5.126 4 N -0.162 5.162 5 C -0.036 4.036 6 C -0.081 4.081 7 C -0.223 4.223 8 C -0.104 4.104 9 C 0.288 3.712 10 O -0.421 6.421 11 N -0.377 5.377 12 C 0.000 4.000 13 C -0.025 4.025 14 C -0.559 4.559 15 H 0.077 0.923 16 C -0.143 4.143 17 N -0.533 5.533 18 Si 0.724 3.276 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.209 1.209 22 H 0.098 0.902 23 H 0.095 0.905 24 H 0.089 0.911 25 H 0.090 0.910 26 H 0.104 0.896 27 H 0.105 0.895 28 H 0.188 0.812 29 H 0.113 0.887 30 H 0.115 0.885 31 H 0.230 0.770 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.040 0.960 35 H 0.041 0.959 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.981 16.616 11.267 21.604 hybrid contribution -0.076 -1.676 -0.645 1.798 sum 7.905 14.940 10.622 19.962 Atomic orbital electron populations 1.20182 0.86850 1.02840 1.03347 1.22150 0.96786 0.90187 0.98291 1.77248 0.86335 1.22710 1.26303 1.48222 1.05495 1.04640 1.57870 1.21786 0.83783 0.95036 1.02970 1.22217 0.99074 0.84899 1.01892 1.19332 0.91910 0.94868 1.16165 1.19925 1.03016 0.92414 0.95049 1.20637 0.77370 0.82065 0.91082 1.90674 1.52042 1.52979 1.46422 1.46349 1.67341 1.12962 1.11051 1.21669 0.99719 0.98513 0.80080 1.19323 0.96768 0.88343 0.98073 1.21110 1.44907 0.97467 0.92430 0.92250 1.24997 0.95352 0.96640 0.97339 1.69963 1.46454 1.06070 1.30854 0.86470 0.77889 0.78654 0.84635 1.19595 1.20953 1.20936 0.90202 0.90542 0.91137 0.91024 0.89632 0.89499 0.81180 0.88677 0.88453 0.77000 0.92752 0.92838 0.95985 0.95933 0.92925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.87 10.26 36.00 0.37 -0.50 16 2 C 0.09 1.33 7.22 -82.40 -0.59 0.74 16 3 N -0.30 -4.55 12.57 33.67 0.42 -4.13 16 4 N -0.38 -4.75 4.01 -68.16 -0.27 -5.02 16 5 C 0.11 0.79 11.47 59.85 0.69 1.48 16 6 C 0.06 0.79 11.40 -17.22 -0.20 0.60 16 7 C -0.21 -2.88 4.59 -105.05 -0.48 -3.37 16 8 C -0.06 -0.76 5.95 -29.04 -0.17 -0.93 16 9 C 0.50 8.45 7.82 -10.99 -0.09 8.36 16 10 O -0.54 -11.51 16.03 5.55 0.09 -11.42 16 11 N -0.73 -12.48 5.56 -60.29 -0.33 -12.81 16 12 C 0.12 2.63 5.61 -4.04 -0.02 2.60 16 13 C 0.01 0.31 5.09 -27.89 -0.14 0.16 16 14 C -0.52 -14.50 9.11 -34.44 -0.31 -14.81 16 15 H 0.06 1.63 7.74 -52.48 -0.41 1.23 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.89 -26.11 13.29 55.43 0.74 -25.37 16 18 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 19 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 23 H 0.08 0.76 7.37 -51.93 -0.38 0.38 16 24 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.17 1.51 8.06 -52.49 -0.42 1.09 16 29 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.10 0.97 7.41 -51.93 -0.39 0.59 16 31 H 0.40 5.75 8.47 -40.82 -0.35 5.41 16 32 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 315.09 15.07 4.75 4.75 Total: -1.00 -35.35 315.09 -5.99 -41.34 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -5.31 Total: 0.38 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: -1.05 Total: -4.12 kcal Atomic # 7 Polarization: -47.88 SS G_CDS: 0.55 Total: -47.33 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: 0.09 Total: -11.42 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -35.35 -5.99 -41.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001435874232.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.892 kcal (2) G-P(sol) polarization free energy of solvation -35.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds