Wall clock time and date at job start Sun Mar 29 2020 23:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.34122 * 125.98844 * 2 1 4 4 C 1.30505 * 109.25388 * 180.02562 * 3 2 1 5 5 N 1.35045 * 108.69945 * 359.76664 * 4 3 2 6 6 H 0.97000 * 126.39827 * 180.26552 * 5 4 3 7 7 C 1.34665 * 125.98630 * 180.02562 * 2 1 3 8 8 C 1.50703 * 126.59360 * 359.95919 * 7 2 1 9 9 C 1.50701 * 109.47064 * 85.00152 * 8 7 2 10 10 O 1.21280 * 119.99781 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99795 * 179.97438 * 9 8 7 12 12 C 1.46497 * 119.99566 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.46983 * 180.02562 * 12 11 9 14 14 C 1.53005 * 109.47452 * 179.97438 * 13 12 11 15 15 C 1.50695 * 109.47088 * 179.97438 * 14 13 12 16 16 H 1.08003 * 120.00531 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99882 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99989 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00260 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47245 * 89.99518 * 19 17 15 21 21 H 1.48501 * 109.47507 * 209.99538 * 19 17 15 22 22 H 1.48499 * 109.47170 * 329.99678 * 19 17 15 23 23 H 1.08997 * 109.47196 * 269.99651 * 1 2 3 24 24 H 1.09003 * 109.47027 * 29.99485 * 1 2 3 25 25 H 1.09000 * 109.47184 * 149.99442 * 1 2 3 26 26 H 1.07999 * 125.64760 * 180.02562 * 4 3 2 27 27 H 1.09002 * 109.47152 * 325.00244 * 8 7 2 28 28 H 1.09001 * 109.46980 * 205.00345 * 8 7 2 29 29 H 0.96995 * 120.00011 * 0.02562 * 11 9 8 30 30 H 1.09001 * 109.47487 * 300.00114 * 12 11 9 31 31 H 1.09002 * 109.47182 * 60.00342 * 12 11 9 32 32 H 1.09001 * 109.47289 * 299.99909 * 13 12 11 33 33 H 1.09002 * 109.47153 * 59.99993 * 13 12 11 34 34 H 1.08998 * 109.47061 * 300.00668 * 14 13 12 35 35 H 1.09002 * 109.46668 * 60.00355 * 14 13 12 36 36 H 0.96996 * 119.99885 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2952 1.0852 0.0000 4 6 3.5450 0.7095 -0.0006 5 7 3.5913 -0.6402 0.0043 6 1 4.3913 -1.1887 0.0087 7 6 2.2983 -1.0896 -0.0005 8 6 1.8472 -2.5276 -0.0003 9 6 1.5779 -2.9697 -1.4156 10 8 1.7371 -2.1938 -2.3339 11 7 1.1610 -4.2278 -1.6607 12 6 0.8998 -4.6578 -3.0366 13 6 0.4416 -6.1175 -3.0364 14 6 0.1681 -6.5665 -4.4733 15 6 -0.2825 -8.0045 -4.4730 16 1 -0.3652 -8.5444 -3.5413 17 6 -0.5883 -8.6313 -5.6624 18 7 -0.4872 -7.9740 -6.7971 19 14 -1.1476 -10.4136 -5.6622 20 1 -2.6266 -10.4682 -5.5400 21 1 -0.7315 -11.0632 -6.9311 22 1 -0.5295 -11.1262 -4.5153 23 1 -0.3633 -0.0001 1.0276 24 1 -0.3633 0.8901 -0.5138 25 1 -0.3633 -0.8899 -0.5139 26 1 4.4004 1.3687 -0.0003 27 1 0.9355 -2.6222 0.5897 28 1 2.6273 -3.1530 0.4336 29 1 1.0341 -4.8484 -0.9262 30 1 0.1196 -4.0325 -3.4708 31 1 1.8116 -4.5629 -3.6262 32 1 1.2215 -6.7431 -2.6021 33 1 -0.4703 -6.2121 -2.4468 34 1 -0.6119 -5.9409 -4.9072 35 1 1.0798 -6.4720 -5.0632 36 1 -0.7027 -8.4148 -7.6338 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001464975097.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:17:32 Heat of formation + Delta-G solvation = -5.681554 kcal Electronic energy + Delta-G solvation = -17454.764019 eV Core-core repulsion = 14552.955817 eV Total energy + Delta-G solvation = -2901.808202 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.22878 -39.40788 -35.47154 -33.37693 -33.21496 -32.83287 -31.21348 -29.08393 -26.87556 -25.68217 -23.12157 -21.82058 -20.82165 -20.31104 -19.54764 -17.91187 -17.01296 -16.44400 -15.71304 -15.43365 -15.02854 -14.77674 -14.48255 -13.97894 -13.46585 -13.36917 -12.90330 -12.84031 -12.43256 -12.31337 -12.17861 -11.86141 -11.66782 -10.92824 -10.77303 -10.62482 -10.08521 -10.04098 -9.90639 -9.87643 -9.42393 -9.15328 -8.83431 -8.40000 -8.31271 -6.04500 -4.07926 1.85010 2.69743 2.93669 3.01744 3.28736 3.35177 3.37448 3.47489 4.38621 4.41820 4.58056 4.76416 4.93904 5.12654 5.21350 5.23314 5.31266 5.65608 5.68426 5.73135 5.86332 5.94211 6.05798 6.11736 6.42836 6.55348 6.65947 6.78449 6.96225 7.24058 7.60230 7.64468 7.72498 7.93972 7.96636 8.32228 8.36188 8.98818 9.56481 11.06783 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.058414 B = 0.003090 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.225993 B = 9059.450466 C = 9072.662725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.020 3.980 3 N -0.493 5.493 4 C 0.186 3.814 5 N -0.563 5.563 6 H 0.418 0.582 7 C -0.005 4.005 8 C -0.066 4.066 9 C 0.504 3.496 10 O -0.531 6.531 11 N -0.727 5.727 12 C 0.117 3.883 13 C -0.120 4.120 14 C 0.023 3.977 15 C -0.523 4.523 16 H 0.055 0.945 17 C 0.057 3.943 18 N -0.894 5.894 19 Si 0.893 3.107 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.274 1.274 23 H 0.066 0.934 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.207 0.793 27 H 0.116 0.884 28 H 0.099 0.901 29 H 0.398 0.602 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.019 0.981 35 H 0.018 0.982 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.992 11.693 17.178 21.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.109 4.109 3 N -0.213 5.213 4 C -0.097 4.097 5 N -0.166 5.166 6 H 0.255 0.745 7 C -0.121 4.121 8 C -0.108 4.108 9 C 0.289 3.711 10 O -0.407 6.407 11 N -0.378 5.378 12 C -0.006 4.006 13 C -0.158 4.158 14 C -0.014 4.014 15 C -0.562 4.562 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.533 5.533 19 Si 0.721 3.279 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.199 1.199 23 H 0.085 0.915 24 H 0.089 0.911 25 H 0.086 0.914 26 H 0.224 0.776 27 H 0.134 0.866 28 H 0.117 0.883 29 H 0.232 0.768 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.761 13.074 16.295 21.958 hybrid contribution 0.496 -2.393 0.154 2.449 sum 7.257 10.681 16.449 20.913 Atomic orbital electron populations 1.20043 0.87817 1.03026 1.01760 1.20428 0.96395 0.87786 1.06330 1.70161 1.00586 1.30702 1.19810 1.24851 0.97347 0.81854 1.05674 1.43115 1.07933 1.08714 1.56866 0.74492 1.20179 0.84091 0.95448 1.12339 1.20060 1.03922 0.90808 0.95974 1.20462 0.77669 0.82210 0.90773 1.90749 1.51143 1.52761 1.46088 1.46205 1.68300 1.12590 1.10691 1.21647 1.00887 0.97157 0.80907 1.21888 0.99962 0.91621 1.02373 1.19030 0.97242 0.96141 0.89001 1.21198 1.45274 0.96917 0.92771 0.92638 1.25036 0.95628 0.98156 0.95656 1.69966 1.48768 1.36796 0.97720 0.86577 0.78962 0.84914 0.77431 1.20623 1.21198 1.19899 0.91518 0.91052 0.91435 0.77626 0.86630 0.88312 0.76789 0.91712 0.91899 0.92768 0.92654 0.96251 0.96328 0.92892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.77 10.13 36.01 0.36 -0.41 16 2 C 0.02 0.26 7.09 -82.85 -0.59 -0.33 16 3 N -0.49 -6.78 11.25 -10.87 -0.12 -6.90 16 4 C 0.19 1.90 13.04 -90.37 -1.18 0.72 16 5 N -0.56 -5.28 6.15 -10.30 -0.06 -5.35 16 6 H 0.42 2.53 8.96 -40.82 -0.37 2.16 16 7 C -0.01 -0.06 5.73 -81.60 -0.47 -0.53 16 8 C -0.07 -0.61 5.81 -29.03 -0.17 -0.78 16 9 C 0.50 6.86 7.82 -10.98 -0.09 6.77 16 10 O -0.53 -9.81 16.03 5.56 0.09 -9.72 16 11 N -0.73 -9.49 5.56 -60.30 -0.33 -9.83 16 12 C 0.12 1.99 5.67 -4.04 -0.02 1.96 16 13 C -0.12 -2.28 5.27 -26.73 -0.14 -2.42 16 14 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 15 C -0.52 -14.45 9.11 -34.44 -0.31 -14.76 16 16 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.89 -26.69 13.29 55.43 0.74 -25.95 16 19 Si 0.89 21.29 29.54 -169.99 -5.02 16.26 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 23 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 25 H 0.07 0.75 7.89 -51.93 -0.41 0.34 16 26 H 0.21 1.20 8.06 -52.49 -0.42 0.77 16 27 H 0.12 0.81 8.03 -51.93 -0.42 0.39 16 28 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.40 3.92 8.47 -40.82 -0.35 3.58 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 314.00 15.07 4.73 4.73 Total: -1.00 -36.04 314.00 -8.13 -44.17 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -5.31 Total: 0.39 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -2.84 Total: -7.81 kcal Atomic # 7 Polarization: -48.24 SS G_CDS: 0.22 Total: -48.03 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.09 Total: -9.72 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -36.04 -8.13 -44.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464975097.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.490 kcal (2) G-P(sol) polarization free energy of solvation -36.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds