Wall clock time and date at job start Sun Mar 29 2020 22:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.34650 * 125.80307 * 2 1 4 4 H 0.97002 * 124.85772 * 0.02562 * 3 2 1 5 5 C 1.36449 * 110.29615 * 180.28072 * 3 2 1 6 6 C 1.34486 * 108.85728 * 359.76357 * 5 3 2 7 7 C 1.36766 * 125.79746 * 179.88218 * 2 1 3 8 8 C 1.47266 * 126.94459 * 359.97438 * 7 2 1 9 9 O 1.21624 * 119.99923 * 359.70860 * 8 7 2 10 10 N 1.34777 * 120.00328 * 179.43729 * 8 7 2 11 11 C 1.46496 * 120.00344 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47047 * 179.97438 * 11 10 8 13 13 H 1.08994 * 109.47307 * 64.99745 * 12 11 10 14 14 C 1.53008 * 109.46869 * 185.00032 * 12 11 10 15 15 N 1.46500 * 109.46948 * 304.99098 * 12 11 10 16 16 C 1.36938 * 119.99856 * 155.00019 * 15 12 11 17 17 H 1.08004 * 119.99671 * 0.02562 * 16 15 12 18 18 C 1.38807 * 120.00386 * 180.02562 * 16 15 12 19 19 N 1.31625 * 119.99616 * 0.02562 * 18 16 15 20 20 Si 1.86792 * 120.00429 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47157 * 59.99922 * 20 18 16 22 22 H 1.48496 * 109.47575 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47307 * 300.00197 * 20 18 16 24 24 H 1.09002 * 109.47043 * 270.12393 * 1 2 3 25 25 H 1.09003 * 109.47309 * 30.11627 * 1 2 3 26 26 H 1.08995 * 109.47657 * 150.11795 * 1 2 3 27 27 H 1.08007 * 125.57296 * 179.80790 * 5 3 2 28 28 H 1.07996 * 126.83498 * 179.97438 * 6 5 3 29 29 H 0.97004 * 119.99647 * 359.97438 * 10 8 7 30 30 H 1.09004 * 109.46586 * 299.99667 * 11 10 8 31 31 H 1.08993 * 109.47302 * 59.99555 * 11 10 8 32 32 H 1.09003 * 109.46715 * 299.99632 * 14 12 11 33 33 H 1.08998 * 109.47301 * 59.99272 * 14 12 11 34 34 H 1.09001 * 109.46905 * 179.97438 * 14 12 11 35 35 H 0.96996 * 120.00561 * 335.01360 * 15 12 11 36 36 H 0.97003 * 119.99611 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2947 1.0921 0.0000 4 1 1.9735 2.0073 0.0004 5 6 3.6095 0.7273 -0.0063 6 6 3.6881 -0.6153 -0.0052 7 6 2.3070 -1.1093 0.0023 8 6 1.8701 -2.5156 0.0057 9 8 0.6838 -2.7839 0.0121 10 7 2.7847 -3.5055 -0.0038 11 6 2.3501 -4.9045 -0.0010 12 6 3.5763 -5.8195 -0.0140 13 1 4.1364 -5.6897 0.9120 14 6 3.1243 -7.2762 -0.1368 15 7 4.4301 -5.4755 -1.1536 16 6 5.7697 -5.7570 -1.1150 17 1 6.1966 -6.2329 -0.2446 18 6 6.5790 -5.4306 -2.1946 19 7 6.0587 -4.8502 -3.2552 20 14 8.4061 -5.8152 -2.1422 21 1 8.5995 -7.2783 -1.9784 22 1 9.0422 -5.3700 -3.4081 23 1 9.0295 -5.1023 -0.9983 24 1 -0.3633 0.0022 1.0277 25 1 -0.3634 0.8889 -0.5156 26 1 -0.3634 -0.8910 -0.5120 27 1 4.4498 1.4058 -0.0106 28 1 4.5888 -1.2111 -0.0095 29 1 3.7308 -3.2916 -0.0133 30 1 1.7600 -5.0998 0.8945 31 1 1.7432 -5.0983 -0.8853 32 1 2.4890 -7.5321 0.7111 33 1 2.5642 -7.4060 -1.0627 34 1 3.9979 -7.9280 -0.1465 35 1 4.0467 -5.0483 -1.9355 36 1 6.6243 -4.6218 -4.0095 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480441109.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:05 Heat of formation + Delta-G solvation = 8.273851 kcal Electronic energy + Delta-G solvation = -18221.206621 eV Core-core repulsion = 15320.003571 eV Total energy + Delta-G solvation = -2901.203050 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.06853 -38.63848 -36.12798 -33.39723 -31.89315 -31.40323 -30.74554 -28.64352 -26.60752 -25.40682 -23.62514 -21.92648 -20.54460 -19.99509 -18.90306 -17.55838 -17.24493 -15.68251 -15.37077 -15.11842 -14.71637 -14.14904 -13.69794 -13.49392 -13.37220 -12.97743 -12.78103 -12.60924 -12.48715 -12.11496 -12.01256 -11.80692 -11.44454 -11.28350 -10.82592 -10.70167 -10.30962 -9.96115 -9.65996 -9.37127 -8.92735 -8.73782 -8.39437 -8.00523 -6.98097 -5.75960 -3.05939 1.98181 2.60049 3.20732 3.43569 3.48705 3.49383 3.94633 4.02535 4.59037 4.91946 5.09543 5.26034 5.43783 5.54681 5.59870 5.62947 5.67568 5.71317 6.04438 6.04917 6.06401 6.18755 6.26908 6.32556 6.47516 6.64879 6.83559 6.90513 7.00636 7.05241 7.19705 7.51848 7.70033 8.24694 8.41561 8.87665 9.53133 10.09391 10.45260 11.45906 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.020998 B = 0.005892 C = 0.004831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.154814 B = 4751.101434 C = 5794.479726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.096 3.904 3 N -0.556 5.556 4 H 0.412 0.588 5 C -0.025 4.025 6 C -0.158 4.158 7 C -0.228 4.228 8 C 0.586 3.414 9 O -0.568 6.568 10 N -0.708 5.708 11 C 0.117 3.883 12 C 0.159 3.841 13 H 0.052 0.948 14 C -0.162 4.162 15 N -0.723 5.723 16 C -0.242 4.242 17 H 0.070 0.930 18 C -0.011 4.011 19 N -0.930 5.930 20 Si 0.906 3.094 21 H -0.287 1.287 22 H -0.292 1.292 23 H -0.286 1.286 24 H 0.074 0.926 25 H 0.059 0.941 26 H 0.101 0.899 27 H 0.168 0.832 28 H 0.149 0.851 29 H 0.410 0.590 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.039 0.961 33 H 0.048 0.952 34 H 0.057 0.943 35 H 0.386 0.614 36 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.663 10.906 7.668 15.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.022 4.022 3 N -0.152 5.152 4 H 0.248 0.752 5 C -0.152 4.152 6 C -0.182 4.182 7 C -0.238 4.238 8 C 0.375 3.625 9 O -0.450 6.450 10 N -0.358 5.358 11 C -0.007 4.007 12 C 0.049 3.951 13 H 0.070 0.930 14 C -0.222 4.222 15 N -0.365 5.365 16 C -0.373 4.373 17 H 0.088 0.912 18 C -0.207 4.207 19 N -0.578 5.578 20 Si 0.737 3.263 21 H -0.214 1.214 22 H -0.218 1.218 23 H -0.213 1.213 24 H 0.092 0.908 25 H 0.078 0.922 26 H 0.120 0.880 27 H 0.185 0.815 28 H 0.167 0.833 29 H 0.246 0.754 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.220 0.780 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.300 10.770 7.703 15.628 hybrid contribution 1.490 0.408 -0.413 1.599 sum -6.810 11.178 7.291 14.983 Atomic orbital electron populations 1.20530 0.87226 1.04002 1.03120 1.20285 0.93572 0.85718 1.02620 1.41544 1.06295 1.08133 1.59259 0.75182 1.21687 0.85484 0.96514 1.11470 1.22198 0.96232 0.93670 1.06132 1.20230 0.93233 0.92310 1.18055 1.17339 0.85295 0.84175 0.75693 1.90670 1.16831 1.84678 1.52820 1.45751 1.10526 1.05669 1.73870 1.21635 0.97401 0.80468 1.01225 1.20514 0.90044 0.91766 0.92813 0.92954 1.22360 1.00742 0.99098 1.00049 1.42461 1.05169 1.72410 1.16500 1.19183 0.84247 1.33057 1.00789 0.91219 1.24731 0.97960 1.01477 0.96526 1.69667 1.34737 1.46895 1.06485 0.86299 0.85491 0.77915 0.76621 1.21358 1.21798 1.21301 0.90775 0.92228 0.87998 0.81511 0.83320 0.75370 0.92025 0.91999 0.94230 0.93236 0.92425 0.78030 0.93471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.05 9.88 36.01 0.36 -0.70 16 2 C 0.10 1.30 7.17 -81.89 -0.59 0.71 16 3 N -0.56 -5.89 5.90 -9.11 -0.05 -5.95 16 4 H 0.41 2.78 8.96 -40.82 -0.37 2.41 16 5 C -0.02 -0.29 11.89 -16.82 -0.20 -0.49 16 6 C -0.16 -2.35 10.56 -37.50 -0.40 -2.74 16 7 C -0.23 -3.77 6.29 -103.35 -0.65 -4.42 16 8 C 0.59 11.04 7.81 -12.59 -0.10 10.95 16 9 O -0.57 -11.66 14.82 5.26 0.08 -11.58 16 10 N -0.71 -13.14 5.38 -61.44 -0.33 -13.47 16 11 C 0.12 2.15 5.23 -4.04 -0.02 2.13 16 12 C 0.16 3.11 3.05 -67.92 -0.21 2.90 16 13 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 14 C -0.16 -2.90 9.49 37.16 0.35 -2.55 16 15 N -0.72 -17.45 4.56 -53.42 -0.24 -17.70 16 16 C -0.24 -6.45 9.93 -15.06 -0.15 -6.60 16 17 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 18 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 19 N -0.93 -27.54 13.06 55.49 0.72 -26.81 16 20 Si 0.91 21.92 29.55 -169.99 -5.02 16.90 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.10 1.43 6.47 -51.93 -0.34 1.09 16 27 H 0.17 1.39 8.06 -52.48 -0.42 0.97 16 28 H 0.15 2.20 7.69 -52.49 -0.40 1.80 16 29 H 0.41 7.75 7.26 -40.82 -0.30 7.46 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.39 10.15 7.80 -40.82 -0.32 9.84 16 36 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 308.85 15.07 4.65 4.65 Total: -1.00 -32.08 308.85 -6.96 -39.04 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: -5.07 Total: 16.12 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: -1.70 Total: -1.20 kcal Atomic # 7 Polarization: -64.02 SS G_CDS: 0.10 Total: -63.93 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: 0.08 Total: -11.58 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.08 -6.96 -39.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480441109.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.313 kcal (2) G-P(sol) polarization free energy of solvation -32.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds