Wall clock time and date at job start Sun Mar 29 2020 22:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.34650 * 125.80307 * 2 1 4 4 H 0.97002 * 124.85772 * 0.02562 * 3 2 1 5 5 C 1.36449 * 110.29615 * 180.28072 * 3 2 1 6 6 C 1.34486 * 108.85728 * 359.76357 * 5 3 2 7 7 C 1.36766 * 125.79746 * 179.88218 * 2 1 3 8 8 C 1.47266 * 126.94459 * 359.97438 * 7 2 1 9 9 O 1.21624 * 119.99923 * 359.70860 * 8 7 2 10 10 N 1.34777 * 120.00328 * 179.43729 * 8 7 2 11 11 C 1.46496 * 120.00344 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47047 * 179.97438 * 11 10 8 13 13 H 1.08994 * 109.47307 * 64.99745 * 12 11 10 14 14 C 1.53008 * 109.46869 * 185.00032 * 12 11 10 15 15 N 1.46500 * 109.46948 * 304.99098 * 12 11 10 16 16 C 1.36938 * 119.99856 * 155.00019 * 15 12 11 17 17 H 1.08004 * 119.99671 * 0.02562 * 16 15 12 18 18 C 1.38807 * 120.00386 * 180.02562 * 16 15 12 19 19 N 1.31625 * 119.99616 * 0.02562 * 18 16 15 20 20 Si 1.86792 * 120.00429 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47157 * 59.99922 * 20 18 16 22 22 H 1.48496 * 109.47575 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47307 * 300.00197 * 20 18 16 24 24 H 1.09002 * 109.47043 * 270.12393 * 1 2 3 25 25 H 1.09003 * 109.47309 * 30.11627 * 1 2 3 26 26 H 1.08995 * 109.47657 * 150.11795 * 1 2 3 27 27 H 1.08007 * 125.57296 * 179.80790 * 5 3 2 28 28 H 1.07996 * 126.83498 * 179.97438 * 6 5 3 29 29 H 0.97004 * 119.99647 * 359.97438 * 10 8 7 30 30 H 1.09004 * 109.46586 * 299.99667 * 11 10 8 31 31 H 1.08993 * 109.47302 * 59.99555 * 11 10 8 32 32 H 1.09003 * 109.46715 * 299.99632 * 14 12 11 33 33 H 1.08998 * 109.47301 * 59.99272 * 14 12 11 34 34 H 1.09001 * 109.46905 * 179.97438 * 14 12 11 35 35 H 0.96996 * 120.00561 * 335.01360 * 15 12 11 36 36 H 0.97003 * 119.99611 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2947 1.0921 0.0000 4 1 1.9735 2.0073 0.0004 5 6 3.6095 0.7273 -0.0063 6 6 3.6881 -0.6153 -0.0052 7 6 2.3070 -1.1093 0.0023 8 6 1.8701 -2.5156 0.0057 9 8 0.6838 -2.7839 0.0121 10 7 2.7847 -3.5055 -0.0038 11 6 2.3501 -4.9045 -0.0010 12 6 3.5763 -5.8195 -0.0140 13 1 4.1364 -5.6897 0.9120 14 6 3.1243 -7.2762 -0.1368 15 7 4.4301 -5.4755 -1.1536 16 6 5.7697 -5.7570 -1.1150 17 1 6.1966 -6.2329 -0.2446 18 6 6.5790 -5.4306 -2.1946 19 7 6.0587 -4.8502 -3.2552 20 14 8.4061 -5.8152 -2.1422 21 1 8.5995 -7.2783 -1.9784 22 1 9.0422 -5.3700 -3.4081 23 1 9.0295 -5.1023 -0.9983 24 1 -0.3633 0.0022 1.0277 25 1 -0.3634 0.8889 -0.5156 26 1 -0.3634 -0.8910 -0.5120 27 1 4.4498 1.4058 -0.0106 28 1 4.5888 -1.2111 -0.0095 29 1 3.7308 -3.2916 -0.0133 30 1 1.7600 -5.0998 0.8945 31 1 1.7432 -5.0983 -0.8853 32 1 2.4890 -7.5321 0.7111 33 1 2.5642 -7.4060 -1.0627 34 1 3.9979 -7.9280 -0.1465 35 1 4.0467 -5.0483 -1.9355 36 1 6.6243 -4.6218 -4.0095 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480441109.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:05 Heat of formation + Delta-G solvation = -14.651839 kcal Electronic energy + Delta-G solvation = -18222.200753 eV Core-core repulsion = 15320.003571 eV Total energy + Delta-G solvation = -2902.197182 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.11264 -40.07491 -37.80185 -35.11708 -33.63586 -32.40900 -31.92315 -30.48839 -27.81262 -26.68207 -25.61064 -23.20987 -21.78386 -21.40073 -20.28238 -19.24333 -18.53001 -17.13189 -16.79863 -16.71824 -16.17410 -15.67570 -15.21406 -15.00060 -14.66453 -14.31698 -13.98269 -13.80091 -13.65070 -13.54842 -13.37569 -13.31559 -13.03645 -12.71826 -12.48511 -12.43075 -12.20793 -11.67870 -11.62338 -10.96031 -10.79158 -10.02487 -9.66309 -9.07436 -8.99638 -7.88162 -5.17619 0.80126 1.51463 1.53454 1.55825 1.59433 2.22795 2.58760 2.63000 2.68877 3.45609 3.91520 3.96092 4.00655 4.16205 4.33445 4.35840 4.43523 4.66258 4.70082 4.76018 4.77113 4.89360 5.01401 5.08511 5.10375 5.27763 5.32922 5.48962 5.58094 5.69367 5.81158 6.00964 6.31798 6.68917 6.79916 7.38821 7.42358 8.11503 8.36727 9.34559 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.020998 B = 0.005892 C = 0.004831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.154814 B = 4751.101434 C = 5794.479726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.101 3.899 3 N -0.535 5.535 4 H 0.435 0.565 5 C 0.000 4.000 6 C -0.194 4.194 7 C -0.274 4.274 8 C 0.579 3.421 9 O -0.593 6.593 10 N -0.711 5.711 11 C 0.126 3.874 12 C 0.159 3.841 13 H 0.058 0.942 14 C -0.153 4.153 15 N -0.731 5.731 16 C -0.236 4.236 17 H 0.078 0.922 18 C -0.071 4.071 19 N -0.968 5.968 20 Si 0.970 3.030 21 H -0.282 1.282 22 H -0.300 1.300 23 H -0.276 1.276 24 H 0.085 0.915 25 H 0.094 0.906 26 H 0.073 0.927 27 H 0.207 0.793 28 H 0.137 0.863 29 H 0.407 0.593 30 H 0.079 0.921 31 H 0.048 0.952 32 H 0.074 0.926 33 H 0.042 0.958 34 H 0.045 0.955 35 H 0.372 0.628 36 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.564 12.299 8.899 16.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.018 4.018 3 N -0.133 5.133 4 H 0.275 0.725 5 C -0.128 4.128 6 C -0.218 4.218 7 C -0.284 4.284 8 C 0.370 3.630 9 O -0.477 6.477 10 N -0.360 5.360 11 C 0.001 3.999 12 C 0.050 3.950 13 H 0.076 0.924 14 C -0.214 4.214 15 N -0.372 5.372 16 C -0.368 4.368 17 H 0.096 0.904 18 C -0.264 4.264 19 N -0.619 5.619 20 Si 0.799 3.201 21 H -0.208 1.208 22 H -0.227 1.227 23 H -0.202 1.202 24 H 0.103 0.897 25 H 0.112 0.888 26 H 0.092 0.908 27 H 0.224 0.776 28 H 0.155 0.845 29 H 0.242 0.758 30 H 0.097 0.903 31 H 0.066 0.934 32 H 0.092 0.908 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.203 0.797 36 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -8.216 12.168 8.987 17.214 hybrid contribution 1.389 0.023 -0.729 1.569 sum -6.827 12.191 8.258 16.230 Atomic orbital electron populations 1.20531 0.85867 1.04293 1.03891 1.20519 0.94520 0.85782 1.01005 1.41525 1.05675 1.08683 1.57393 0.72469 1.22187 0.86668 0.95811 1.08124 1.22238 0.95323 0.95321 1.08923 1.20286 0.94863 0.91794 1.21409 1.17785 0.84938 0.85291 0.74995 1.90638 1.17622 1.85274 1.54208 1.45779 1.10361 1.05837 1.74058 1.21539 0.96670 0.80341 1.01346 1.20684 0.89943 0.93058 0.91279 0.92432 1.22225 1.00714 0.97160 1.01270 1.42586 1.05016 1.72416 1.17193 1.19556 0.85358 1.31313 1.00554 0.90430 1.25476 1.01979 1.02378 0.96523 1.69835 1.35876 1.48984 1.07177 0.85272 0.80757 0.77759 0.76291 1.20836 1.22686 1.20226 0.89694 0.88753 0.90810 0.77646 0.84497 0.75751 0.90294 0.93370 0.90753 0.93924 0.93582 0.79653 0.94248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.90 9.88 71.24 0.70 -1.19 16 2 C 0.10 2.61 7.17 41.78 0.30 2.91 16 3 N -0.54 -9.72 5.90 -182.73 -1.08 -10.80 16 4 H 0.43 4.06 8.96 -92.71 -0.83 3.22 16 5 C 0.00 -0.01 11.89 83.12 0.99 0.98 16 6 C -0.19 -5.71 10.56 23.62 0.25 -5.46 16 7 C -0.27 -9.08 6.29 -19.04 -0.12 -9.20 16 8 C 0.58 22.43 7.81 86.62 0.68 23.10 16 9 O -0.59 -24.97 14.82 -4.11 -0.06 -25.03 16 10 N -0.71 -27.14 5.38 -466.53 -2.51 -29.65 16 11 C 0.13 4.62 5.23 86.38 0.45 5.08 16 12 C 0.16 6.17 3.05 44.99 0.14 6.31 16 13 H 0.06 2.20 8.08 -2.39 -0.02 2.18 16 14 C -0.15 -5.33 9.49 71.98 0.68 -4.65 16 15 N -0.73 -35.77 4.56 -322.93 -1.47 -37.24 16 16 C -0.24 -12.62 9.93 84.03 0.83 -11.79 16 17 H 0.08 3.96 7.83 -2.91 -0.02 3.94 16 18 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 19 N -0.97 -58.58 13.06 21.65 0.28 -58.30 16 20 Si 0.97 45.31 29.55 68.60 2.03 47.33 16 21 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 22 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 23 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 24 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.07 2.06 6.47 -2.39 -0.02 2.04 16 27 H 0.21 2.57 8.06 -2.91 -0.02 2.55 16 28 H 0.14 4.21 7.69 -2.91 -0.02 4.19 16 29 H 0.41 15.98 7.26 -92.71 -0.67 15.31 16 30 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 31 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.07 2.06 8.14 -2.39 -0.02 2.05 16 33 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.37 20.17 7.80 -92.71 -0.72 19.44 16 36 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -70.41 308.85 1.44 -68.97 By element: Atomic # 1 Polarization: 43.27 SS G_CDS: -1.12 Total: 42.15 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: 5.37 Total: 2.57 kcal Atomic # 7 Polarization: -131.21 SS G_CDS: -4.78 Total: -135.99 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -0.06 Total: -25.03 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.33 kcal Total: -70.41 1.44 -68.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480441109.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.314 kcal (2) G-P(sol) polarization free energy of solvation -70.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds