Wall clock time and date at job start Sun Mar 29 2020 22:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.34658 * 125.80572 * 2 1 4 4 H 0.97000 * 124.84736 * 359.97438 * 3 2 1 5 5 C 1.36441 * 110.30131 * 180.25433 * 3 2 1 6 6 C 1.34489 * 108.85595 * 359.61534 * 5 3 2 7 7 C 1.36776 * 125.79961 * 180.02562 * 2 1 3 8 8 C 1.47260 * 126.94314 * 359.94318 * 7 2 1 9 9 O 1.21629 * 119.99841 * 323.76274 * 8 7 2 10 10 N 1.34770 * 120.00360 * 143.75677 * 8 7 2 11 11 C 1.46502 * 119.99865 * 4.54988 * 10 8 7 12 12 C 1.46494 * 120.00378 * 184.54297 * 10 8 7 13 13 C 1.52999 * 109.47169 * 90.00418 * 12 10 8 14 14 N 1.46497 * 109.47547 * 179.97438 * 13 12 10 15 15 C 1.36933 * 120.00349 * 179.97438 * 14 13 12 16 16 H 1.08001 * 119.99912 * 0.02562 * 15 14 13 17 17 C 1.38815 * 120.00283 * 179.97438 * 15 14 13 18 18 N 1.31626 * 119.99766 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00121 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47109 * 90.00578 * 19 17 15 21 21 H 1.48506 * 109.47143 * 210.00560 * 19 17 15 22 22 H 1.48500 * 109.47272 * 330.00162 * 19 17 15 23 23 H 1.09003 * 109.47287 * 89.97169 * 1 2 3 24 24 H 1.08993 * 109.47115 * 209.97343 * 1 2 3 25 25 H 1.09002 * 109.46917 * 329.97439 * 1 2 3 26 26 H 1.08007 * 125.57503 * 179.77751 * 5 3 2 27 27 H 1.08003 * 126.83375 * 180.13666 * 6 5 3 28 28 H 1.09000 * 109.47306 * 84.81915 * 11 10 8 29 29 H 1.08999 * 109.47199 * 204.82491 * 11 10 8 30 30 H 1.09001 * 109.47037 * 324.82130 * 11 10 8 31 31 H 1.09005 * 109.47343 * 210.00470 * 12 10 8 32 32 H 1.08996 * 109.47280 * 330.00586 * 12 10 8 33 33 H 1.09005 * 109.47030 * 300.00243 * 13 12 10 34 34 H 1.09001 * 109.47344 * 59.99906 * 13 12 10 35 35 H 0.97003 * 119.99576 * 0.02562 * 14 13 12 36 36 H 0.96999 * 119.99793 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2948 1.0921 0.0000 4 1 1.9734 2.0073 -0.0004 5 6 3.6095 0.7274 -0.0057 6 6 3.6882 -0.6152 -0.0009 7 6 2.3071 -1.1093 -0.0005 8 6 1.8702 -2.5157 0.0000 9 8 0.8789 -2.8443 0.6236 10 7 2.5686 -3.4386 -0.6904 11 6 3.8169 -3.0632 -1.3592 12 6 2.0798 -4.8171 -0.7721 13 6 1.1702 -4.9642 -1.9935 14 7 0.6818 -6.3430 -2.0756 15 6 -0.1548 -6.7135 -3.0943 16 1 -0.4543 -5.9894 -3.8375 17 6 -0.6172 -8.0201 -3.1723 18 7 -0.2517 -8.9027 -2.2668 19 14 -1.7579 -8.5257 -4.5624 20 1 -0.9524 -9.0050 -5.7143 21 1 -2.6530 -9.6153 -4.0968 22 1 -2.5753 -7.3588 -4.9814 23 1 -0.3634 0.0005 -1.0277 24 1 -0.3633 -0.8902 0.5134 25 1 -0.3633 0.8898 0.5142 26 1 4.4498 1.4059 -0.0104 27 1 4.5890 -1.2110 -0.0014 28 1 4.6412 -3.1193 -0.6482 29 1 4.0046 -3.7460 -2.1878 30 1 3.7335 -2.0450 -1.7392 31 1 2.9261 -5.4979 -0.8651 32 1 1.5178 -5.0574 0.1304 33 1 0.3240 -4.2835 -1.9004 34 1 1.7322 -4.7239 -2.8961 35 1 0.9506 -6.9932 -1.4078 36 1 -0.5751 -9.8155 -2.3211 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493516585.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:02 Heat of formation + Delta-G solvation = 26.298900 kcal Electronic energy + Delta-G solvation = -18107.498355 eV Core-core repulsion = 15207.076930 eV Total energy + Delta-G solvation = -2900.421425 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.34808 -39.01572 -35.70158 -34.24202 -31.74693 -31.63187 -30.76812 -28.09066 -26.86334 -25.84252 -23.90496 -22.10706 -20.96787 -20.73013 -18.38199 -17.69379 -17.04251 -16.00354 -15.64346 -15.19164 -14.61620 -14.30901 -13.89726 -13.67944 -13.40123 -13.13782 -12.96368 -12.87801 -12.66651 -12.65021 -12.47549 -11.84678 -11.64121 -11.16071 -10.90420 -10.81686 -10.57911 -10.05032 -9.70581 -9.52369 -8.86129 -8.79991 -8.36220 -8.17571 -6.85183 -5.69219 -2.97927 1.85890 2.35912 2.97795 3.36496 3.48936 3.53717 3.56040 3.61723 4.67502 4.74388 4.80810 5.04904 5.11649 5.36372 5.38420 5.52877 5.58108 5.60757 5.73497 5.79413 5.85483 5.90636 5.99887 6.10786 6.16259 6.27338 6.65012 6.72708 6.82157 6.91134 7.07332 7.31399 7.76193 7.77087 8.49234 8.58677 9.60254 10.17643 10.53007 11.53879 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.036838 B = 0.004248 C = 0.004055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.904642 B = 6590.377113 C = 6903.724008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.095 3.905 3 N -0.555 5.555 4 H 0.414 0.586 5 C -0.022 4.022 6 C -0.169 4.169 7 C -0.225 4.225 8 C 0.588 3.412 9 O -0.542 6.542 10 N -0.607 5.607 11 C 0.080 3.920 12 C 0.108 3.892 13 C 0.143 3.857 14 N -0.731 5.731 15 C -0.236 4.236 16 H 0.070 0.930 17 C -0.015 4.015 18 N -0.934 5.934 19 Si 0.908 3.092 20 H -0.290 1.290 21 H -0.291 1.291 22 H -0.282 1.282 23 H 0.076 0.924 24 H 0.102 0.898 25 H 0.065 0.935 26 H 0.167 0.833 27 H 0.147 0.853 28 H 0.051 0.949 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.022 0.978 34 H 0.017 0.983 35 H 0.384 0.616 36 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.917 21.870 4.282 24.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.022 4.022 3 N -0.151 5.151 4 H 0.250 0.750 5 C -0.150 4.150 6 C -0.193 4.193 7 C -0.235 4.235 8 C 0.377 3.623 9 O -0.420 6.420 10 N -0.339 5.339 11 C -0.063 4.063 12 C -0.014 4.014 13 C 0.015 3.985 14 N -0.375 5.375 15 C -0.367 4.367 16 H 0.088 0.912 17 C -0.211 4.211 18 N -0.583 5.583 19 Si 0.739 3.261 20 H -0.218 1.218 21 H -0.217 1.217 22 H -0.208 1.208 23 H 0.094 0.906 24 H 0.120 0.880 25 H 0.084 0.916 26 H 0.185 0.815 27 H 0.165 0.835 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.104 0.896 33 H 0.040 0.960 34 H 0.035 0.965 35 H 0.217 0.783 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 9.280 21.809 4.467 24.119 hybrid contribution -0.404 -0.093 -0.658 0.777 sum 8.876 21.716 3.809 23.767 Atomic orbital electron populations 1.20585 0.87207 1.04573 1.03400 1.20256 0.93606 0.85585 1.02747 1.41549 1.06222 1.08263 1.59045 0.75008 1.21698 0.85637 0.96418 1.11215 1.22178 0.95838 0.93430 1.07848 1.20160 0.93401 0.92190 1.17703 1.17434 0.82418 0.84095 0.78337 1.90765 1.26745 1.81142 1.43391 1.47586 1.24196 1.10256 1.51881 1.21961 0.85369 1.01898 0.97119 1.21682 0.98619 0.80359 1.00776 1.20913 0.94855 0.88590 0.94162 1.42224 1.57324 1.05619 1.32372 1.19219 1.20159 0.94219 1.03133 0.91235 1.24741 1.01175 0.96194 0.98949 1.69668 1.49094 1.03513 1.36012 0.86167 0.80403 0.77932 0.81570 1.21755 1.21748 1.20780 0.90563 0.87957 0.91650 0.81531 0.83505 0.93033 0.91070 0.90614 0.90622 0.89644 0.96026 0.96474 0.78260 0.93536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.09 10.21 36.01 0.37 -0.72 16 2 C 0.10 1.12 7.17 -81.88 -0.59 0.54 16 3 N -0.55 -4.59 5.90 -9.10 -0.05 -4.65 16 4 H 0.41 1.98 8.96 -40.82 -0.37 1.62 16 5 C -0.02 -0.18 11.89 -16.83 -0.20 -0.38 16 6 C -0.17 -1.78 8.76 -37.50 -0.33 -2.11 16 7 C -0.22 -3.14 5.49 -103.35 -0.57 -3.70 16 8 C 0.59 10.25 7.47 -12.60 -0.09 10.16 16 9 O -0.54 -11.39 15.03 5.25 0.08 -11.31 16 10 N -0.61 -9.81 2.87 -182.91 -0.53 -10.34 16 11 C 0.08 0.94 9.04 59.85 0.54 1.48 16 12 C 0.11 2.03 5.53 -4.04 -0.02 2.00 16 13 C 0.14 3.21 6.58 -4.04 -0.03 3.18 16 14 N -0.73 -19.81 5.60 -59.91 -0.34 -20.14 16 15 C -0.24 -6.96 9.99 -15.06 -0.15 -7.11 16 16 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 17 C -0.01 -0.44 5.50 -17.43 -0.10 -0.54 16 18 N -0.93 -29.17 13.06 55.49 0.72 -28.45 16 19 Si 0.91 23.11 29.55 -169.99 -5.02 18.09 16 20 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 21 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 22 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 23 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.10 1.41 6.57 -51.93 -0.34 1.07 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.17 0.77 8.06 -52.48 -0.42 0.35 16 27 H 0.15 1.30 6.44 -52.48 -0.34 0.96 16 28 H 0.05 0.50 7.36 -51.93 -0.38 0.12 16 29 H 0.07 0.82 8.03 -51.93 -0.42 0.40 16 30 H 0.08 0.82 5.84 -51.93 -0.30 0.52 16 31 H 0.08 1.30 8.07 -51.93 -0.42 0.88 16 32 H 0.09 1.76 7.36 -51.93 -0.38 1.38 16 33 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.38 10.77 7.67 -40.82 -0.31 10.45 16 36 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 304.04 15.07 4.58 4.58 Total: -1.00 -36.11 304.04 -6.64 -42.75 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -4.92 Total: 6.66 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: -1.16 Total: 2.80 kcal Atomic # 7 Polarization: -63.38 SS G_CDS: -0.19 Total: -63.57 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.08 Total: -11.31 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -5.02 Total: 18.09 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -36.11 -6.64 -42.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493516585.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.044 kcal (2) G-P(sol) polarization free energy of solvation -36.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds