Wall clock time and date at job start Sun Mar 29 2020 22:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.34658 * 125.80572 * 2 1 4 4 H 0.97000 * 124.84736 * 359.97438 * 3 2 1 5 5 C 1.36441 * 110.30131 * 180.25433 * 3 2 1 6 6 C 1.34489 * 108.85595 * 359.61534 * 5 3 2 7 7 C 1.36776 * 125.79961 * 180.02562 * 2 1 3 8 8 C 1.47260 * 126.94314 * 359.94318 * 7 2 1 9 9 O 1.21629 * 119.99841 * 323.76274 * 8 7 2 10 10 N 1.34770 * 120.00360 * 143.75677 * 8 7 2 11 11 C 1.46502 * 119.99865 * 4.54988 * 10 8 7 12 12 C 1.46494 * 120.00378 * 184.54297 * 10 8 7 13 13 C 1.52999 * 109.47169 * 90.00418 * 12 10 8 14 14 N 1.46497 * 109.47547 * 179.97438 * 13 12 10 15 15 C 1.36933 * 120.00349 * 179.97438 * 14 13 12 16 16 H 1.08001 * 119.99912 * 0.02562 * 15 14 13 17 17 C 1.38815 * 120.00283 * 179.97438 * 15 14 13 18 18 N 1.31626 * 119.99766 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00121 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47109 * 90.00578 * 19 17 15 21 21 H 1.48506 * 109.47143 * 210.00560 * 19 17 15 22 22 H 1.48500 * 109.47272 * 330.00162 * 19 17 15 23 23 H 1.09003 * 109.47287 * 89.97169 * 1 2 3 24 24 H 1.08993 * 109.47115 * 209.97343 * 1 2 3 25 25 H 1.09002 * 109.46917 * 329.97439 * 1 2 3 26 26 H 1.08007 * 125.57503 * 179.77751 * 5 3 2 27 27 H 1.08003 * 126.83375 * 180.13666 * 6 5 3 28 28 H 1.09000 * 109.47306 * 84.81915 * 11 10 8 29 29 H 1.08999 * 109.47199 * 204.82491 * 11 10 8 30 30 H 1.09001 * 109.47037 * 324.82130 * 11 10 8 31 31 H 1.09005 * 109.47343 * 210.00470 * 12 10 8 32 32 H 1.08996 * 109.47280 * 330.00586 * 12 10 8 33 33 H 1.09005 * 109.47030 * 300.00243 * 13 12 10 34 34 H 1.09001 * 109.47344 * 59.99906 * 13 12 10 35 35 H 0.97003 * 119.99576 * 0.02562 * 14 13 12 36 36 H 0.96999 * 119.99793 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2948 1.0921 0.0000 4 1 1.9734 2.0073 -0.0004 5 6 3.6095 0.7274 -0.0057 6 6 3.6882 -0.6152 -0.0009 7 6 2.3071 -1.1093 -0.0005 8 6 1.8702 -2.5157 0.0000 9 8 0.8789 -2.8443 0.6236 10 7 2.5686 -3.4386 -0.6904 11 6 3.8169 -3.0632 -1.3592 12 6 2.0798 -4.8171 -0.7721 13 6 1.1702 -4.9642 -1.9935 14 7 0.6818 -6.3430 -2.0756 15 6 -0.1548 -6.7135 -3.0943 16 1 -0.4543 -5.9894 -3.8375 17 6 -0.6172 -8.0201 -3.1723 18 7 -0.2517 -8.9027 -2.2668 19 14 -1.7579 -8.5257 -4.5624 20 1 -0.9524 -9.0050 -5.7143 21 1 -2.6530 -9.6153 -4.0968 22 1 -2.5753 -7.3588 -4.9814 23 1 -0.3634 0.0005 -1.0277 24 1 -0.3633 -0.8902 0.5134 25 1 -0.3633 0.8898 0.5142 26 1 4.4498 1.4059 -0.0104 27 1 4.5890 -1.2110 -0.0014 28 1 4.6412 -3.1193 -0.6482 29 1 4.0046 -3.7460 -2.1878 30 1 3.7335 -2.0450 -1.7392 31 1 2.9261 -5.4979 -0.8651 32 1 1.5178 -5.0574 0.1304 33 1 0.3240 -4.2835 -1.9004 34 1 1.7322 -4.7239 -2.8961 35 1 0.9506 -6.9932 -1.4078 36 1 -0.5751 -9.8155 -2.3211 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493516585.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:01 Heat of formation + Delta-G solvation = -0.084928 kcal Electronic energy + Delta-G solvation = -18108.642444 eV Core-core repulsion = 15207.076930 eV Total energy + Delta-G solvation = -2901.565514 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.18210 -40.29381 -37.32413 -36.04932 -33.51661 -32.47911 -32.02011 -29.73938 -27.87059 -26.97968 -25.72023 -23.76970 -22.25859 -21.61189 -19.61736 -19.14687 -18.46174 -17.22098 -17.09521 -16.58155 -16.22882 -15.51854 -15.24695 -15.09063 -15.00891 -14.65654 -14.30049 -13.95470 -13.76757 -13.51581 -13.45860 -13.08664 -12.93160 -12.81014 -12.68904 -12.49936 -12.30929 -12.13054 -11.87398 -10.98375 -10.89436 -9.71924 -9.60904 -9.07548 -9.04772 -7.97736 -5.29073 0.85694 1.46039 1.49375 1.57902 1.61310 1.95617 2.40233 2.48581 2.58033 3.35192 3.82780 3.95191 4.07183 4.20587 4.25014 4.30579 4.38736 4.44052 4.56131 4.64051 4.67224 4.79511 4.96053 4.98395 5.05900 5.07807 5.10267 5.27251 5.42979 5.60658 5.84508 6.04279 6.23497 6.51195 6.74028 7.28719 7.29774 8.00462 8.27167 9.25801 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.036838 B = 0.004248 C = 0.004055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.904642 B = 6590.377113 C = 6903.724008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.086 3.914 3 N -0.537 5.537 4 H 0.433 0.567 5 C 0.002 3.998 6 C -0.186 4.186 7 C -0.263 4.263 8 C 0.578 3.422 9 O -0.595 6.595 10 N -0.607 5.607 11 C 0.077 3.923 12 C 0.122 3.878 13 C 0.152 3.848 14 N -0.743 5.743 15 C -0.253 4.253 16 H 0.073 0.927 17 C -0.072 4.072 18 N -0.968 5.968 19 Si 0.980 3.020 20 H -0.280 1.280 21 H -0.292 1.292 22 H -0.272 1.272 23 H 0.078 0.922 24 H 0.065 0.935 25 H 0.096 0.904 26 H 0.212 0.788 27 H 0.162 0.838 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.059 0.941 33 H -0.002 1.002 34 H 0.029 0.971 35 H 0.376 0.624 36 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.439 24.268 3.269 27.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.033 4.033 3 N -0.134 5.134 4 H 0.273 0.727 5 C -0.126 4.126 6 C -0.209 4.209 7 C -0.273 4.273 8 C 0.370 3.630 9 O -0.477 6.477 10 N -0.339 5.339 11 C -0.065 4.065 12 C -0.001 4.001 13 C 0.024 3.976 14 N -0.386 5.386 15 C -0.385 4.385 16 H 0.091 0.909 17 C -0.265 4.265 18 N -0.618 5.618 19 Si 0.808 3.192 20 H -0.207 1.207 21 H -0.218 1.218 22 H -0.197 1.197 23 H 0.096 0.904 24 H 0.084 0.916 25 H 0.115 0.885 26 H 0.229 0.771 27 H 0.179 0.821 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.107 0.893 31 H 0.113 0.887 32 H 0.077 0.923 33 H 0.016 0.984 34 H 0.047 0.953 35 H 0.208 0.792 36 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 10.849 24.280 3.430 26.814 hybrid contribution -0.836 -0.733 -0.316 1.156 sum 10.013 23.547 3.114 25.777 Atomic orbital electron populations 1.20516 0.87322 1.04290 1.03450 1.20281 0.93936 0.86332 1.02712 1.41550 1.06081 1.08417 1.57380 0.72718 1.22367 0.86269 0.96201 1.07738 1.22383 0.94639 0.94704 1.09182 1.20114 0.95937 0.90499 1.20769 1.18131 0.81663 0.85749 0.77484 1.90725 1.29103 1.82199 1.45672 1.47683 1.25406 1.08878 1.51902 1.22226 0.83936 1.02682 0.97649 1.21327 0.98332 0.82745 0.97738 1.20924 0.94606 0.85810 0.96284 1.42400 1.57346 1.07138 1.31743 1.19603 1.20543 0.94652 1.03678 0.90927 1.25648 1.02987 0.96142 1.01707 1.69830 1.50379 1.03706 1.37922 0.85055 0.78223 0.77526 0.78408 1.20699 1.21828 1.19653 0.90351 0.91633 0.88487 0.77111 0.82050 0.90449 0.90638 0.89261 0.88674 0.92281 0.98415 0.95307 0.79227 0.93731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.15 10.21 71.24 0.73 -1.42 16 2 C 0.09 1.94 7.17 41.78 0.30 2.24 16 3 N -0.54 -7.09 5.90 -182.72 -1.08 -8.17 16 4 H 0.43 2.43 8.96 -92.71 -0.83 1.59 16 5 C 0.00 0.03 11.89 83.12 0.99 1.01 16 6 C -0.19 -3.41 8.76 23.62 0.21 -3.21 16 7 C -0.26 -7.19 5.49 -19.04 -0.10 -7.30 16 8 C 0.58 20.86 7.47 86.62 0.65 21.51 16 9 O -0.59 -26.77 15.03 -4.12 -0.06 -26.83 16 10 N -0.61 -19.82 2.87 -850.87 -2.44 -22.26 16 11 C 0.08 1.68 9.04 127.77 1.16 2.83 16 12 C 0.12 4.73 5.53 86.38 0.48 5.21 16 13 C 0.15 6.99 6.58 86.38 0.57 7.55 16 14 N -0.74 -41.37 5.60 -343.45 -1.92 -43.30 16 15 C -0.25 -15.14 9.99 84.03 0.84 -14.30 16 16 H 0.07 4.19 7.83 -2.91 -0.02 4.17 16 17 C -0.07 -4.34 5.50 84.86 0.47 -3.88 16 18 N -0.97 -61.40 13.06 21.65 0.28 -61.11 16 19 Si 0.98 47.69 29.55 68.60 2.03 49.72 16 20 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 21 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 22 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 23 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.06 1.95 6.57 -2.39 -0.02 1.93 16 25 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.21 0.64 8.06 -2.91 -0.02 0.62 16 27 H 0.16 2.34 6.44 -2.91 -0.02 2.33 16 28 H 0.08 1.31 7.36 -2.39 -0.02 1.30 16 29 H 0.07 1.59 8.03 -2.39 -0.02 1.57 16 30 H 0.09 1.75 5.84 -2.39 -0.01 1.73 16 31 H 0.10 3.27 8.07 -2.38 -0.02 3.25 16 32 H 0.06 2.59 7.36 -2.39 -0.02 2.57 16 33 H 0.00 -0.11 8.14 -2.38 -0.02 -0.13 16 34 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.38 21.81 7.67 -92.71 -0.71 21.10 16 36 H 0.25 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -81.18 304.04 2.64 -78.55 By element: Atomic # 1 Polarization: 23.58 SS G_CDS: -0.44 Total: 23.15 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: 6.27 Total: 10.26 kcal Atomic # 7 Polarization: -129.68 SS G_CDS: -5.16 Total: -134.85 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -0.06 Total: -26.83 kcal Atomic # 14 Polarization: 47.69 SS G_CDS: 2.03 Total: 49.72 kcal Total: -81.18 2.64 -78.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493516585.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.462 kcal (2) G-P(sol) polarization free energy of solvation -81.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds