Wall clock time and date at job start Sun Mar 29 2020 22:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39834 * 126.45805 * 2 1 4 4 C 1.35459 * 107.86430 * 180.30770 * 3 2 1 5 5 N 1.35536 * 108.87027 * 359.74311 * 4 3 2 6 6 H 0.97002 * 125.67641 * 180.02562 * 5 4 3 7 7 C 1.37651 * 108.64503 * 359.97438 * 5 4 3 8 8 C 1.46682 * 126.23454 * 179.97438 * 7 5 4 9 9 O 1.21693 * 120.00117 * 180.02562 * 8 7 5 10 10 N 1.34777 * 119.99810 * 359.75606 * 8 7 5 11 11 C 1.46499 * 120.00195 * 180.27605 * 10 8 7 12 12 H 1.08999 * 109.46621 * 324.99673 * 11 10 8 13 13 C 1.52998 * 109.47145 * 84.99285 * 11 10 8 14 14 C 1.52995 * 109.47290 * 204.99666 * 11 10 8 15 15 N 1.46510 * 109.47018 * 54.99553 * 14 11 10 16 16 C 1.36936 * 119.99540 * 179.97438 * 15 14 11 17 17 H 1.07999 * 120.00507 * 0.02562 * 16 15 14 18 18 C 1.38823 * 119.99415 * 180.02562 * 16 15 14 19 19 N 1.31613 * 120.00053 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99770 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47175 * 59.99666 * 20 18 16 22 22 H 1.48502 * 109.47363 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47080 * 299.99945 * 20 18 16 24 24 H 1.08997 * 109.46436 * 270.13032 * 1 2 3 25 25 H 1.08994 * 109.47005 * 30.12991 * 1 2 3 26 26 H 1.08997 * 109.47094 * 150.13641 * 1 2 3 27 27 H 1.08000 * 126.06832 * 0.04932 * 3 2 1 28 28 H 1.07997 * 125.56250 * 179.71745 * 4 3 2 29 29 H 0.97000 * 119.99736 * 0.26877 * 10 8 7 30 30 H 1.08999 * 109.47045 * 60.00647 * 13 11 10 31 31 H 1.09007 * 109.46732 * 180.02562 * 13 11 10 32 32 H 1.08995 * 109.47315 * 300.00483 * 13 11 10 33 33 H 1.09000 * 109.47530 * 174.99381 * 14 11 10 34 34 H 1.08999 * 109.47204 * 295.00095 * 14 11 10 35 35 H 0.97003 * 119.99776 * 0.02562 * 15 14 11 36 36 H 0.97003 * 120.00479 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3380 1.1247 0.0000 4 6 3.6218 0.6928 -0.0069 5 7 3.6284 -0.6626 -0.0055 6 1 4.4191 -1.2245 -0.0091 7 6 2.3263 -1.1090 0.0030 8 6 1.8898 -2.5093 0.0067 9 8 0.7026 -2.7766 0.0139 10 7 2.8036 -3.5000 -0.0035 11 6 2.3677 -4.8986 -0.0059 12 1 1.4600 -4.9973 0.5895 13 6 2.0859 -5.3425 -1.4427 14 6 3.4682 -5.7769 0.5926 15 7 3.8217 -5.2774 1.9239 16 6 4.7901 -5.9094 2.6573 17 1 5.2936 -6.7756 2.2543 18 6 5.1246 -5.4364 3.9188 19 7 4.5107 -4.3810 4.4101 20 14 6.4462 -6.2979 4.9191 21 1 7.7297 -6.2686 4.1729 22 1 6.6138 -5.6031 6.2207 23 1 6.0453 -7.7075 5.1590 24 1 -0.3632 0.0023 1.0277 25 1 -0.3633 0.8888 -0.5158 26 1 -0.3633 -0.8912 -0.5117 27 1 2.0137 2.1548 0.0008 28 1 4.4973 1.3252 -0.0130 29 1 3.7499 -3.2869 -0.0092 30 1 2.9936 -5.2438 -2.0381 31 1 1.7611 -6.3830 -1.4444 32 1 1.3019 -4.7168 -1.8692 33 1 3.1105 -6.8034 0.6730 34 1 4.3470 -5.7476 -0.0515 35 1 3.3691 -4.4995 2.2859 36 1 4.7441 -4.0507 5.2918 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732995000.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:17 Heat of formation + Delta-G solvation = 9.439631 kcal Electronic energy + Delta-G solvation = -18376.028139 eV Core-core repulsion = 15474.875641 eV Total energy + Delta-G solvation = -2901.152498 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.17362 -38.94496 -36.13972 -33.73291 -32.45185 -31.42484 -30.18705 -29.10654 -26.67392 -25.69793 -23.01723 -22.27306 -20.90871 -20.10620 -19.02500 -18.44410 -17.11965 -15.90981 -15.48696 -15.02975 -14.68442 -13.91227 -13.74646 -13.67259 -13.40776 -13.22318 -12.95742 -12.49686 -12.36056 -12.24880 -12.14060 -12.05990 -11.61510 -11.43928 -10.94578 -10.85713 -10.50518 -10.11965 -9.78659 -9.61928 -8.96514 -8.77728 -8.66669 -7.99433 -7.01590 -5.82416 -3.13008 1.67391 2.84950 3.24141 3.38801 3.43720 3.45008 3.48580 3.67945 4.52839 5.07328 5.09425 5.25384 5.32183 5.43064 5.49219 5.50690 5.63308 5.85336 5.98039 6.02276 6.04154 6.08296 6.15571 6.25134 6.37260 6.41743 6.51872 6.66335 6.81688 6.94011 7.09063 7.49150 7.62685 7.86270 8.34885 8.51715 9.46622 10.02453 10.37929 11.39502 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.020891 B = 0.005906 C = 0.005036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.952257 B = 4739.740967 C = 5558.388896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.082 4.082 3 C -0.215 4.215 4 C 0.022 3.978 5 N -0.536 5.536 6 H 0.418 0.582 7 C -0.051 4.051 8 C 0.589 3.411 9 O -0.536 6.536 10 N -0.712 5.712 11 C 0.135 3.865 12 H 0.089 0.911 13 C -0.157 4.157 14 C 0.144 3.856 15 N -0.732 5.732 16 C -0.246 4.246 17 H 0.070 0.930 18 C -0.011 4.011 19 N -0.930 5.930 20 Si 0.908 3.092 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.285 1.285 24 H 0.065 0.935 25 H 0.057 0.943 26 H 0.079 0.921 27 H 0.140 0.860 28 H 0.168 0.832 29 H 0.396 0.604 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.035 0.965 34 H 0.023 0.977 35 H 0.386 0.614 36 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.344 8.238 -11.984 14.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.090 4.090 3 C -0.240 4.240 4 C -0.115 4.115 5 N -0.131 5.131 6 H 0.256 0.744 7 C -0.164 4.164 8 C 0.377 3.623 9 O -0.413 6.413 10 N -0.362 5.362 11 C 0.030 3.970 12 H 0.107 0.893 13 C -0.216 4.216 14 C 0.015 3.985 15 N -0.377 5.377 16 C -0.377 4.377 17 H 0.088 0.912 18 C -0.208 4.208 19 N -0.578 5.578 20 Si 0.739 3.261 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.212 1.212 24 H 0.084 0.916 25 H 0.076 0.924 26 H 0.097 0.903 27 H 0.157 0.843 28 H 0.186 0.814 29 H 0.230 0.770 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.053 0.947 34 H 0.041 0.959 35 H 0.220 0.780 36 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.963 7.757 -11.913 14.522 hybrid contribution 1.676 -0.286 0.874 1.912 sum -1.287 7.471 -11.040 13.392 Atomic orbital electron populations 1.20306 0.89519 1.02466 1.02159 1.19906 0.95784 0.90817 1.02537 1.20739 0.91888 0.98595 1.12756 1.21952 0.99438 0.83091 1.06982 1.41990 1.07394 1.07271 1.56484 0.74434 1.20325 0.83681 0.93776 1.18600 1.17031 0.85951 0.83034 0.76287 1.90768 1.16064 1.83327 1.51143 1.45879 1.09341 1.06277 1.74739 1.21255 0.99492 0.79813 0.96426 0.89285 1.22103 1.01612 1.01566 0.96314 1.20995 0.93855 0.95448 0.88154 1.42367 1.45752 1.35642 1.13940 1.19176 1.12157 1.09046 0.97316 0.91173 1.24766 1.00149 0.98211 0.97632 1.69661 1.44515 1.25347 1.18298 0.86259 0.81464 0.78839 0.79524 1.21290 1.21673 1.21191 0.91632 0.92406 0.90250 0.84259 0.81447 0.76980 0.92703 0.91557 0.92311 0.94741 0.95896 0.77994 0.93384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.21 9.83 36.01 0.35 -0.86 16 2 C -0.08 -1.24 6.21 -104.16 -0.65 -1.88 16 3 C -0.22 -2.71 10.76 -39.98 -0.43 -3.14 16 4 C 0.02 0.25 11.89 -16.91 -0.20 0.04 16 5 N -0.54 -6.85 5.99 -9.39 -0.06 -6.91 16 6 H 0.42 4.53 8.19 -40.82 -0.33 4.19 16 7 C -0.05 -0.81 7.06 -81.98 -0.58 -1.38 16 8 C 0.59 10.45 7.75 -12.85 -0.10 10.35 16 9 O -0.54 -10.75 14.47 5.20 0.08 -10.68 16 10 N -0.71 -11.74 4.51 -55.12 -0.25 -11.99 16 11 C 0.13 2.29 2.73 -67.93 -0.19 2.10 16 12 H 0.09 1.71 7.58 -51.93 -0.39 1.32 16 13 C -0.16 -2.17 9.48 37.16 0.35 -1.82 16 14 C 0.14 2.77 5.82 -4.04 -0.02 2.75 16 15 N -0.73 -18.05 5.43 -59.90 -0.33 -18.38 16 16 C -0.25 -6.73 9.99 -15.06 -0.15 -6.88 16 17 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 18 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 19 N -0.93 -27.92 13.06 55.49 0.72 -27.20 16 20 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.08 1.22 6.49 -51.93 -0.34 0.88 16 27 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 28 H 0.17 1.28 8.06 -52.49 -0.42 0.86 16 29 H 0.40 6.06 7.73 -40.82 -0.32 5.74 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.39 10.27 7.33 -40.82 -0.30 9.97 16 36 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 307.93 15.07 4.64 4.64 Total: -1.00 -32.62 307.93 -6.95 -39.57 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: -5.03 Total: 15.01 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: -1.71 Total: -1.13 kcal Atomic # 7 Polarization: -64.57 SS G_CDS: 0.09 Total: -64.48 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.08 Total: -10.68 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.62 -6.95 -39.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732995000.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.014 kcal (2) G-P(sol) polarization free energy of solvation -32.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds