Wall clock time and date at job start Sun Mar 29 2020 22:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39834 * 126.45805 * 2 1 4 4 C 1.35459 * 107.86430 * 180.30770 * 3 2 1 5 5 N 1.35536 * 108.87027 * 359.74311 * 4 3 2 6 6 H 0.97002 * 125.67641 * 180.02562 * 5 4 3 7 7 C 1.37651 * 108.64503 * 359.97438 * 5 4 3 8 8 C 1.46682 * 126.23454 * 179.97438 * 7 5 4 9 9 O 1.21693 * 120.00117 * 180.02562 * 8 7 5 10 10 N 1.34777 * 119.99810 * 359.75606 * 8 7 5 11 11 C 1.46499 * 120.00195 * 180.27605 * 10 8 7 12 12 H 1.08999 * 109.46621 * 324.99673 * 11 10 8 13 13 C 1.52998 * 109.47145 * 84.99285 * 11 10 8 14 14 C 1.52995 * 109.47290 * 204.99666 * 11 10 8 15 15 N 1.46510 * 109.47018 * 54.99553 * 14 11 10 16 16 C 1.36936 * 119.99540 * 179.97438 * 15 14 11 17 17 H 1.07999 * 120.00507 * 0.02562 * 16 15 14 18 18 C 1.38823 * 119.99415 * 180.02562 * 16 15 14 19 19 N 1.31613 * 120.00053 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99770 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47175 * 59.99666 * 20 18 16 22 22 H 1.48502 * 109.47363 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47080 * 299.99945 * 20 18 16 24 24 H 1.08997 * 109.46436 * 270.13032 * 1 2 3 25 25 H 1.08994 * 109.47005 * 30.12991 * 1 2 3 26 26 H 1.08997 * 109.47094 * 150.13641 * 1 2 3 27 27 H 1.08000 * 126.06832 * 0.04932 * 3 2 1 28 28 H 1.07997 * 125.56250 * 179.71745 * 4 3 2 29 29 H 0.97000 * 119.99736 * 0.26877 * 10 8 7 30 30 H 1.08999 * 109.47045 * 60.00647 * 13 11 10 31 31 H 1.09007 * 109.46732 * 180.02562 * 13 11 10 32 32 H 1.08995 * 109.47315 * 300.00483 * 13 11 10 33 33 H 1.09000 * 109.47530 * 174.99381 * 14 11 10 34 34 H 1.08999 * 109.47204 * 295.00095 * 14 11 10 35 35 H 0.97003 * 119.99776 * 0.02562 * 15 14 11 36 36 H 0.97003 * 120.00479 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3380 1.1247 0.0000 4 6 3.6218 0.6928 -0.0069 5 7 3.6284 -0.6626 -0.0055 6 1 4.4191 -1.2245 -0.0091 7 6 2.3263 -1.1090 0.0030 8 6 1.8898 -2.5093 0.0067 9 8 0.7026 -2.7766 0.0139 10 7 2.8036 -3.5000 -0.0035 11 6 2.3677 -4.8986 -0.0059 12 1 1.4600 -4.9973 0.5895 13 6 2.0859 -5.3425 -1.4427 14 6 3.4682 -5.7769 0.5926 15 7 3.8217 -5.2774 1.9239 16 6 4.7901 -5.9094 2.6573 17 1 5.2936 -6.7756 2.2543 18 6 5.1246 -5.4364 3.9188 19 7 4.5107 -4.3810 4.4101 20 14 6.4462 -6.2979 4.9191 21 1 7.7297 -6.2686 4.1729 22 1 6.6138 -5.6031 6.2207 23 1 6.0453 -7.7075 5.1590 24 1 -0.3632 0.0023 1.0277 25 1 -0.3633 0.8888 -0.5158 26 1 -0.3633 -0.8912 -0.5117 27 1 2.0137 2.1548 0.0008 28 1 4.4973 1.3252 -0.0130 29 1 3.7499 -3.2869 -0.0092 30 1 2.9936 -5.2438 -2.0381 31 1 1.7611 -6.3830 -1.4444 32 1 1.3019 -4.7168 -1.8692 33 1 3.1105 -6.8034 0.6730 34 1 4.3470 -5.7476 -0.0515 35 1 3.3691 -4.4995 2.2859 36 1 4.7441 -4.0507 5.2918 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732995000.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:17 Heat of formation + Delta-G solvation = -13.756675 kcal Electronic energy + Delta-G solvation = -18377.034006 eV Core-core repulsion = 15474.875641 eV Total energy + Delta-G solvation = -2902.158365 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 251.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.24377 -40.27286 -37.68724 -35.52653 -33.64232 -32.98260 -31.80381 -30.19222 -27.79404 -27.42784 -24.67420 -23.72431 -22.09387 -21.35366 -20.26687 -19.56816 -19.08464 -17.28030 -16.90410 -16.50856 -16.18650 -15.41316 -15.32177 -15.04290 -14.75129 -14.53256 -14.12191 -13.78438 -13.67090 -13.57738 -13.50992 -13.16431 -13.06020 -12.76729 -12.67081 -12.50295 -12.22151 -11.92375 -11.73491 -11.05060 -10.91474 -10.15920 -9.67050 -9.07673 -9.04759 -7.96449 -5.26967 0.51357 1.46855 1.49703 1.55873 1.86664 2.13383 2.30643 2.40589 2.54452 3.37516 3.73267 3.95043 4.05007 4.27077 4.27567 4.29309 4.41854 4.48624 4.76233 4.82370 4.89769 4.90426 4.91637 5.02117 5.09102 5.19031 5.27735 5.46377 5.48105 5.54173 5.81564 6.02709 6.23144 6.49996 6.63645 7.18695 7.30600 8.03684 8.27709 9.26105 Molecular weight = 251.14amu Principal moments of inertia in cm(-1) A = 0.020891 B = 0.005906 C = 0.005036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.952257 B = 4739.740967 C = 5558.388896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.097 4.097 3 C -0.228 4.228 4 C 0.043 3.957 5 N -0.532 5.532 6 H 0.426 0.574 7 C -0.091 4.091 8 C 0.584 3.416 9 O -0.571 6.571 10 N -0.707 5.707 11 C 0.141 3.859 12 H 0.060 0.940 13 C -0.145 4.145 14 C 0.145 3.855 15 N -0.744 5.744 16 C -0.247 4.247 17 H 0.080 0.920 18 C -0.073 4.073 19 N -0.969 5.969 20 Si 0.975 3.025 21 H -0.274 1.274 22 H -0.299 1.299 23 H -0.280 1.280 24 H 0.059 0.941 25 H 0.084 0.916 26 H 0.057 0.943 27 H 0.165 0.835 28 H 0.212 0.788 29 H 0.402 0.598 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.051 0.949 33 H 0.040 0.960 34 H 0.042 0.958 35 H 0.373 0.627 36 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.719 8.702 -13.011 15.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.106 4.106 3 C -0.252 4.252 4 C -0.094 4.094 5 N -0.128 5.128 6 H 0.265 0.735 7 C -0.203 4.203 8 C 0.373 3.627 9 O -0.451 6.451 10 N -0.358 5.358 11 C 0.036 3.964 12 H 0.078 0.922 13 C -0.204 4.204 14 C 0.018 3.982 15 N -0.387 5.387 16 C -0.378 4.378 17 H 0.098 0.902 18 C -0.266 4.266 19 N -0.619 5.619 20 Si 0.804 3.196 21 H -0.200 1.200 22 H -0.225 1.225 23 H -0.206 1.206 24 H 0.077 0.923 25 H 0.103 0.897 26 H 0.076 0.924 27 H 0.182 0.818 28 H 0.228 0.772 29 H 0.237 0.763 30 H 0.091 0.909 31 H 0.101 0.899 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.205 0.795 36 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -1.310 8.177 -12.991 15.406 hybrid contribution 1.161 -0.394 1.133 1.670 sum -0.149 7.783 -11.858 14.184 Atomic orbital electron populations 1.20283 0.89450 1.02709 1.01799 1.20297 0.96392 0.91748 1.02140 1.21101 0.91985 0.99108 1.12989 1.22721 1.00622 0.82553 1.03511 1.42030 1.06616 1.08110 1.56057 0.73544 1.20166 0.85368 0.92928 1.21854 1.17370 0.85606 0.84059 0.75650 1.90735 1.17380 1.84030 1.52974 1.45811 1.09533 1.05970 1.74440 1.21129 0.97369 0.79964 0.97937 0.92165 1.22001 1.02256 1.02250 0.93878 1.21147 0.95108 0.95816 0.86084 1.42546 1.45257 1.35219 1.15689 1.19616 1.11913 1.08821 0.97496 0.90189 1.25578 1.02730 0.99223 0.99030 1.69835 1.46497 1.27231 1.18355 0.85196 0.79260 0.77623 0.77537 1.19967 1.22532 1.20631 0.92267 0.89736 0.92356 0.81768 0.77153 0.76289 0.90900 0.89894 0.93011 0.94216 0.94015 0.79544 0.94132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.40 9.83 71.24 0.70 -1.70 16 2 C -0.10 -2.87 6.21 -19.56 -0.12 -2.99 16 3 C -0.23 -5.23 10.76 22.01 0.24 -4.99 16 4 C 0.04 0.85 11.89 83.48 0.99 1.84 16 5 N -0.53 -12.88 5.99 -183.61 -1.10 -13.98 16 6 H 0.43 8.66 8.19 -92.71 -0.76 7.90 16 7 C -0.09 -2.88 7.06 40.35 0.28 -2.60 16 8 C 0.58 21.34 7.75 86.45 0.67 22.01 16 9 O -0.57 -24.06 14.47 -4.33 -0.06 -24.12 16 10 N -0.71 -23.57 4.51 -446.51 -2.02 -25.59 16 11 C 0.14 4.78 2.73 44.99 0.12 4.90 16 12 H 0.06 2.40 7.58 -2.39 -0.02 2.38 16 13 C -0.15 -3.83 9.48 71.98 0.68 -3.14 16 14 C 0.15 5.47 5.82 86.38 0.50 5.98 16 15 N -0.74 -36.69 5.43 -343.43 -1.87 -38.55 16 16 C -0.25 -13.35 9.99 84.04 0.84 -12.51 16 17 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 18 C -0.07 -4.12 5.50 84.87 0.47 -3.66 16 19 N -0.97 -58.95 13.06 21.65 0.28 -58.67 16 20 Si 0.97 45.21 29.55 68.60 2.03 47.24 16 21 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 22 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 23 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 24 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.06 1.87 6.49 -2.39 -0.02 1.86 16 27 H 0.16 2.83 8.06 -2.91 -0.02 2.81 16 28 H 0.21 2.22 8.06 -2.91 -0.02 2.20 16 29 H 0.40 12.23 7.73 -92.71 -0.72 11.51 16 30 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 32 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.37 20.23 7.33 -92.71 -0.68 19.55 16 36 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 Total: -1.00 -71.05 307.93 1.60 -69.46 By element: Atomic # 1 Polarization: 42.13 SS G_CDS: -1.05 Total: 41.08 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: 5.38 Total: 3.13 kcal Atomic # 7 Polarization: -132.09 SS G_CDS: -4.70 Total: -136.79 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: -0.06 Total: -24.12 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -71.05 1.60 -69.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732995000.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.698 kcal (2) G-P(sol) polarization free energy of solvation -71.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds