Wall clock time and date at job start Sun Mar 29 2020 22:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47335 * 2 1 4 4 N 1.46505 * 109.46631 * 119.99903 * 2 1 3 5 5 C 1.37099 * 119.99801 * 305.48884 * 4 2 1 6 6 H 1.07991 * 120.00249 * 314.24525 * 5 4 2 7 7 C 1.38956 * 119.99631 * 134.24990 * 5 4 2 8 8 N 1.31405 * 119.99977 * 158.92831 * 7 5 4 9 9 Si 1.86796 * 119.99885 * 338.92863 * 7 5 4 10 10 H 1.48494 * 109.47256 * 95.13439 * 9 7 5 11 11 H 1.48497 * 109.46987 * 215.13502 * 9 7 5 12 12 H 1.48504 * 109.47233 * 335.13488 * 9 7 5 13 13 C 1.34783 * 119.99982 * 125.49745 * 4 2 1 14 14 O 1.21289 * 119.99851 * 183.83714 * 13 4 2 15 15 C 1.50700 * 119.99865 * 3.82575 * 13 4 2 16 16 C 1.50692 * 109.46963 * 174.21986 * 15 13 4 17 17 C 1.29449 * 117.96101 * 94.73835 * 16 15 13 18 18 C 1.50066 * 124.07712 * 180.75240 * 17 16 15 19 19 C 1.53027 * 110.14560 * 342.86802 * 18 17 16 20 20 C 1.53390 * 108.43837 * 49.43736 * 19 18 17 21 21 C 1.50061 * 117.96641 * 275.00146 * 16 15 13 22 22 H 1.09001 * 109.47391 * 305.39766 * 1 2 3 23 23 H 1.09007 * 109.46965 * 65.39753 * 1 2 3 24 24 H 1.08999 * 109.47481 * 185.39513 * 1 2 3 25 25 H 1.09000 * 109.47392 * 239.99292 * 2 1 3 26 26 H 1.08995 * 109.47625 * 183.99709 * 3 2 1 27 27 H 1.09008 * 109.47441 * 303.99310 * 3 2 1 28 28 H 1.09001 * 109.47337 * 63.99304 * 3 2 1 29 29 H 0.96997 * 120.00075 * 179.97438 * 8 7 5 30 30 H 1.09007 * 109.46781 * 54.22205 * 15 13 4 31 31 H 1.08999 * 109.47260 * 294.22287 * 15 13 4 32 32 H 1.07993 * 117.95976 * 0.72528 * 17 16 15 33 33 H 1.09003 * 109.35714 * 222.66766 * 18 17 16 34 34 H 1.08994 * 109.36011 * 103.07257 * 18 17 16 35 35 H 1.08999 * 109.64378 * 289.75129 * 19 18 17 36 36 H 1.09001 * 109.64219 * 169.12635 * 19 18 17 37 37 H 1.09002 * 109.64026 * 172.87725 * 20 19 18 38 38 H 1.08998 * 109.64098 * 52.25089 * 20 19 18 39 39 H 1.09003 * 109.36366 * 282.79834 * 21 16 15 40 40 H 1.08999 * 109.35614 * 42.51808 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0182 -0.6906 1.1963 5 6 1.5967 -0.2914 2.4383 6 1 1.5782 0.7585 2.6905 7 6 1.1936 -1.2377 3.3725 8 7 1.1878 -0.9371 4.6517 9 14 0.6598 -2.9371 2.8100 10 1 1.8121 -3.8701 2.8916 11 1 -0.4362 -3.4263 3.6843 12 1 0.1791 -2.8657 1.4067 13 6 2.8818 -1.7184 1.0758 14 8 3.2320 -2.3348 2.0599 15 6 3.4121 -2.1018 -0.2818 16 6 4.4573 -3.1764 -0.1276 17 6 4.0825 -4.4094 -0.2492 18 6 5.0030 -5.5860 -0.1062 19 6 6.4597 -5.1331 -0.2264 20 6 6.6731 -3.9331 0.7049 21 6 5.8666 -2.7508 0.1633 22 1 -0.3634 0.5953 0.8377 23 1 -0.3633 0.4279 -0.9344 24 1 -0.3634 -1.0231 0.0966 25 1 1.8934 -0.5139 -0.8899 26 1 3.1276 1.4433 -0.0716 27 1 1.6194 1.9766 -0.8521 28 1 1.7363 1.9352 0.9236 29 1 0.9061 -1.5975 5.3038 30 1 3.8569 -1.2280 -0.7581 31 1 2.5950 -2.4755 -0.8988 32 1 3.0426 -4.6035 -0.4666 33 1 4.7848 -6.3126 -0.8889 34 1 4.8480 -6.0497 0.8679 35 1 6.6687 -4.8402 -1.2552 36 1 7.1220 -5.9474 0.0676 37 1 7.7314 -3.6734 0.7312 38 1 6.3288 -4.1824 1.7086 39 1 6.3306 -2.3865 -0.7534 40 1 5.8570 -1.9524 0.9053 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089869510.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:16 Heat of formation + Delta-G solvation = -29.513670 kcal Electronic energy + Delta-G solvation = -19623.304079 eV Core-core repulsion = 16824.002782 eV Total energy + Delta-G solvation = -2799.301296 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.33985 -37.91438 -35.45222 -32.76104 -32.00839 -30.46656 -30.36396 -27.46855 -26.54799 -24.29445 -22.93797 -21.59237 -20.79849 -19.17543 -17.22881 -16.81175 -15.73828 -15.50812 -14.95959 -14.33806 -14.14611 -13.61967 -13.51123 -13.22673 -13.07937 -12.83669 -12.45827 -12.32419 -12.11500 -11.97991 -11.80336 -11.59530 -11.31264 -11.17160 -10.76030 -10.72973 -10.58862 -10.25247 -10.18090 -10.05437 -9.87254 -9.80009 -8.58923 -8.47809 -8.17028 -7.46192 -6.12662 -3.87946 2.64597 3.36913 3.49254 3.69043 3.94075 4.55000 4.63356 4.93297 4.96794 5.11087 5.24602 5.43546 5.50658 5.54145 5.62567 5.67057 5.76681 5.81179 5.84859 5.90376 5.95220 6.01845 6.05709 6.14494 6.15092 6.18055 6.35474 6.37865 6.40947 6.47216 6.51422 6.57019 6.85864 6.95895 7.02652 7.43194 7.94423 8.13368 8.89247 9.05446 9.53386 9.95911 10.94058 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.021543 B = 0.008461 C = 0.007224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.413975 B = 3308.528098 C = 3875.073442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.122 3.878 3 C -0.153 4.153 4 N -0.465 5.465 5 C -0.343 4.343 6 H 0.091 0.909 7 C 0.097 3.903 8 N -0.869 5.869 9 Si 0.899 3.101 10 H -0.257 1.257 11 H -0.308 1.308 12 H -0.279 1.279 13 C 0.458 3.542 14 O -0.536 6.536 15 C -0.110 4.110 16 C -0.083 4.083 17 C -0.164 4.164 18 C -0.083 4.083 19 C -0.117 4.117 20 C -0.118 4.118 21 C -0.078 4.078 22 H 0.069 0.931 23 H 0.047 0.953 24 H 0.051 0.949 25 H 0.067 0.933 26 H 0.048 0.952 27 H 0.050 0.950 28 H 0.066 0.934 29 H 0.270 0.730 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.606 -3.438 -13.038 14.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.018 3.982 3 C -0.212 4.212 4 N -0.189 5.189 5 C -0.469 4.469 6 H 0.108 0.892 7 C -0.112 4.112 8 N -0.504 5.504 9 Si 0.729 3.271 10 H -0.183 1.183 11 H -0.237 1.237 12 H -0.205 1.205 13 C 0.247 3.753 14 O -0.417 6.417 15 C -0.150 4.150 16 C -0.084 4.084 17 C -0.182 4.182 18 C -0.120 4.120 19 C -0.155 4.155 20 C -0.156 4.156 21 C -0.115 4.115 22 H 0.088 0.912 23 H 0.066 0.934 24 H 0.070 0.930 25 H 0.085 0.915 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.103 0.897 31 H 0.099 0.901 32 H 0.114 0.886 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.742 -3.767 -12.337 14.119 hybrid contribution -0.589 -0.731 -0.192 0.958 sum 5.153 -4.498 -12.528 14.274 Atomic orbital electron populations 1.22001 0.95566 1.02209 1.01027 1.21120 0.94458 0.93550 0.89100 1.22055 1.00477 0.96776 1.01848 1.43775 1.38975 1.30454 1.05716 1.18608 1.46673 0.94629 0.86946 0.89164 1.25267 0.92899 0.98683 0.94349 1.69773 1.43492 1.36352 1.00754 0.86558 0.76984 0.85793 0.77738 1.18273 1.23669 1.20489 1.20325 0.80920 0.84185 0.89906 1.90554 1.59679 1.52351 1.39108 1.20902 0.97750 0.98670 0.97696 1.20336 0.95017 0.94031 0.98997 1.21715 0.98982 0.93771 1.03772 1.20351 0.93870 0.96268 1.01551 1.21583 0.96202 0.97921 0.99768 1.21576 0.99106 0.95121 0.99792 1.20319 0.92100 0.98477 1.00603 0.91205 0.93393 0.93017 0.91470 0.93269 0.93099 0.91543 0.92066 0.89731 0.90106 0.88622 0.91801 0.91235 0.92076 0.92217 0.92139 0.91369 0.91574 0.90591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 8.97 37.16 0.33 -2.34 16 2 C 0.12 2.27 3.09 -67.93 -0.21 2.06 16 3 C -0.15 -2.53 9.29 37.15 0.35 -2.18 16 4 N -0.47 -11.11 2.02 -107.73 -0.22 -11.33 16 5 C -0.34 -9.61 8.30 -14.93 -0.12 -9.74 16 6 H 0.09 2.65 7.24 -52.49 -0.38 2.27 16 7 C 0.10 2.88 4.79 -17.47 -0.08 2.79 16 8 N -0.87 -27.01 13.96 55.50 0.77 -26.23 16 9 Si 0.90 24.55 25.12 -169.99 -4.27 20.28 16 10 H -0.26 -7.43 6.44 56.52 0.36 -7.07 16 11 H -0.31 -8.27 7.11 56.52 0.40 -7.87 16 12 H -0.28 -7.26 6.82 56.52 0.39 -6.88 16 13 C 0.46 10.94 6.07 -10.98 -0.07 10.87 16 14 O -0.54 -15.05 11.90 5.55 0.07 -14.99 16 15 C -0.11 -2.00 4.04 -29.04 -0.12 -2.12 16 16 C -0.08 -1.46 4.34 -100.95 -0.44 -1.89 16 17 C -0.16 -2.76 9.37 -35.90 -0.34 -3.10 16 18 C -0.08 -1.16 6.12 -28.18 -0.17 -1.34 16 19 C -0.12 -1.45 6.01 -26.52 -0.16 -1.61 16 20 C -0.12 -1.67 6.01 -26.52 -0.16 -1.83 16 21 C -0.08 -1.22 5.80 -28.18 -0.16 -1.38 16 22 H 0.07 1.34 7.74 -51.93 -0.40 0.94 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.05 0.99 7.86 -51.93 -0.41 0.58 16 25 H 0.07 1.08 5.85 -51.93 -0.30 0.78 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.05 0.68 8.14 -51.92 -0.42 0.25 16 28 H 0.07 1.22 7.13 -51.93 -0.37 0.85 16 29 H 0.27 7.95 8.31 -40.82 -0.34 7.61 16 30 H 0.08 1.33 7.74 -51.93 -0.40 0.93 16 31 H 0.08 1.35 7.45 -51.93 -0.39 0.96 16 32 H 0.10 1.63 7.74 -52.49 -0.41 1.22 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.06 0.70 8.12 -51.93 -0.42 0.28 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.07 1.10 8.12 -51.93 -0.42 0.68 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 LS Contribution 312.15 15.07 4.70 4.70 Total: -1.00 -33.20 312.15 -7.19 -40.39 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -6.90 Total: -1.03 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: -1.35 Total: -11.80 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: 0.56 Total: -37.56 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: 0.07 Total: -14.99 kcal Atomic # 14 Polarization: 24.55 SS G_CDS: -4.27 Total: 20.28 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -33.20 -7.19 -40.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089869510.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.881 kcal (2) G-P(sol) polarization free energy of solvation -33.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds