Wall clock time and date at job start Sun Mar 29 2020 23:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46556 * 2 1 4 4 C 1.50694 * 109.47413 * 119.99999 * 2 1 3 5 5 H 1.08004 * 119.99760 * 120.00536 * 4 2 1 6 6 C 1.37875 * 120.00142 * 300.00474 * 4 2 1 7 7 N 1.31514 * 120.00117 * 179.97438 * 6 4 2 8 8 Si 1.86804 * 120.00138 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.46947 * 89.99815 * 8 6 4 10 10 H 1.48504 * 109.47001 * 210.00353 * 8 6 4 11 11 H 1.48499 * 109.46629 * 329.99671 * 8 6 4 12 12 N 1.46500 * 109.47316 * 240.00520 * 2 1 3 13 13 C 1.46499 * 120.00122 * 299.99925 * 12 2 1 14 14 C 1.34779 * 120.00165 * 119.99314 * 12 2 1 15 15 O 1.21282 * 119.99926 * 0.02562 * 14 12 2 16 16 C 1.50699 * 120.00033 * 179.97438 * 14 12 2 17 17 C 1.50706 * 109.46817 * 180.02562 * 16 14 12 18 18 C 1.29439 * 117.95827 * 94.73867 * 17 16 14 19 19 C 1.50074 * 124.07349 * 180.23508 * 18 17 16 20 20 C 1.53025 * 110.20029 * 343.31380 * 19 18 17 21 21 C 1.53395 * 108.43273 * 49.25114 * 20 19 18 22 22 C 1.50065 * 117.96291 * 274.99724 * 17 16 14 23 23 H 1.08996 * 109.47405 * 60.00203 * 1 2 3 24 24 H 1.09009 * 109.46815 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47241 * 299.99206 * 1 2 3 26 26 H 0.97001 * 120.00264 * 179.97438 * 7 6 4 27 27 H 1.09008 * 109.46586 * 269.99917 * 13 12 2 28 28 H 1.09004 * 109.47061 * 29.99236 * 13 12 2 29 29 H 1.08998 * 109.47333 * 150.00026 * 13 12 2 30 30 H 1.09000 * 109.46670 * 60.00406 * 16 14 12 31 31 H 1.09000 * 109.47247 * 300.00119 * 16 14 12 32 32 H 1.07999 * 117.96649 * 0.46354 * 18 17 16 33 33 H 1.09000 * 109.48068 * 222.99618 * 19 18 17 34 34 H 1.08999 * 109.17898 * 103.44308 * 19 18 17 35 35 H 1.08990 * 109.64248 * 289.56687 * 20 19 18 36 36 H 1.08996 * 109.81093 * 169.03219 * 20 19 18 37 37 H 1.09002 * 109.63910 * 172.88125 * 21 20 19 38 38 H 1.09001 * 109.64532 * 52.24861 * 21 20 19 39 39 H 1.08997 * 109.36148 * 283.05702 * 22 17 16 40 40 H 1.09004 * 109.35625 * 42.78233 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6534 -1.5884 1.1312 6 6 1.6993 -0.2394 2.4827 7 7 2.1373 -0.8597 3.5565 8 14 0.6246 1.2789 2.6542 9 1 -0.8029 0.8723 2.6999 10 1 0.9758 1.9949 3.9069 11 1 0.8468 2.1764 1.4922 12 7 2.0184 -0.6905 -1.1962 13 6 1.6645 -2.0931 -1.4282 14 6 2.7931 -0.0354 -2.0834 15 8 3.0864 1.1256 -1.8912 16 6 3.2960 -0.7459 -3.3136 17 6 4.1335 0.2014 -4.1336 18 6 5.4157 0.1858 -3.9573 19 6 6.3767 1.0717 -4.6948 20 6 5.7027 1.6673 -5.9329 21 6 4.3507 2.2573 -5.5125 22 6 3.4285 1.1082 -5.0994 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 1.9033 -0.5281 4.4375 27 1 2.4159 -2.7375 -0.9719 28 1 0.6905 -2.3002 -0.9848 29 1 1.6239 -2.2850 -2.5004 30 1 2.4484 -1.0888 -3.9070 31 1 3.9018 -1.6020 -3.0167 32 1 5.8195 -0.5106 -3.2373 33 1 7.2458 0.4896 -5.0014 34 1 6.6985 1.8779 -4.0356 35 1 5.5463 0.8859 -6.6764 36 1 6.3305 2.4528 -6.3533 37 1 3.9101 2.7973 -6.3506 38 1 4.4923 2.9344 -4.6701 39 1 3.1405 0.5401 -5.9840 40 1 2.5357 1.5165 -4.6257 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000106771811.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:32:35 Heat of formation + Delta-G solvation = -31.585858 kcal Electronic energy + Delta-G solvation = -18977.645070 eV Core-core repulsion = 16178.253917 eV Total energy + Delta-G solvation = -2799.391153 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.55550 -38.06156 -35.44948 -33.04151 -32.41118 -30.65768 -30.40510 -27.09287 -26.17691 -25.07459 -23.20043 -22.09363 -20.84579 -18.29421 -17.45788 -16.94300 -16.15624 -15.68463 -15.38752 -14.88590 -14.43181 -14.05730 -13.65915 -13.44992 -12.93050 -12.84052 -12.55298 -12.31941 -12.22576 -12.15472 -12.05270 -11.71628 -11.63061 -11.43638 -11.05398 -10.75317 -10.67102 -10.38439 -10.14025 -10.10437 -9.63839 -9.34413 -9.08628 -8.62633 -8.49243 -7.68242 -6.13659 -4.13957 2.40988 3.23654 3.34762 3.37365 3.40472 3.94549 4.36109 4.71831 4.78332 4.95192 5.15923 5.22658 5.30508 5.32187 5.46833 5.51481 5.64026 5.67507 5.71915 5.82588 5.86382 5.98098 5.99795 6.01934 6.15427 6.21628 6.25194 6.27443 6.34082 6.38355 6.50404 6.80514 6.85471 7.15303 7.20492 7.38679 7.65278 8.22750 8.50414 8.86842 8.98035 9.47800 10.99214 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.032509 B = 0.005276 C = 0.005191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.096056 B = 5305.470777 C = 5393.017210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.229 3.771 3 H 0.062 0.938 4 C -0.526 4.526 5 H 0.078 0.922 6 C 0.075 3.925 7 N -0.896 5.896 8 Si 0.883 3.117 9 H -0.277 1.277 10 H -0.294 1.294 11 H -0.263 1.263 12 N -0.591 5.591 13 C 0.087 3.913 14 C 0.508 3.492 15 O -0.547 6.547 16 C -0.109 4.109 17 C -0.094 4.094 18 C -0.154 4.154 19 C -0.086 4.086 20 C -0.119 4.119 21 C -0.119 4.119 22 C -0.078 4.078 23 H 0.032 0.968 24 H 0.055 0.945 25 H 0.050 0.950 26 H 0.265 0.735 27 H 0.053 0.947 28 H 0.072 0.928 29 H 0.054 0.946 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.192 0.259 -17.888 18.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.127 3.873 3 H 0.080 0.920 4 C -0.564 4.564 5 H 0.096 0.904 6 C -0.128 4.128 7 N -0.534 5.534 8 Si 0.713 3.287 9 H -0.204 1.204 10 H -0.221 1.221 11 H -0.188 1.188 12 N -0.323 5.323 13 C -0.057 4.057 14 C 0.295 3.705 15 O -0.425 6.425 16 C -0.149 4.149 17 C -0.095 4.095 18 C -0.172 4.172 19 C -0.122 4.122 20 C -0.156 4.156 21 C -0.156 4.156 22 C -0.115 4.115 23 H 0.051 0.949 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.091 0.909 29 H 0.073 0.927 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.119 0.881 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.334 0.853 -17.556 17.731 hybrid contribution -0.672 0.460 0.526 0.969 sum 1.662 1.313 -17.030 17.161 Atomic orbital electron populations 1.22454 0.99229 1.00990 0.99204 1.19263 0.89865 0.95221 0.82973 0.92042 1.21169 1.32567 1.14162 0.88526 0.90435 1.24870 0.95703 0.96573 0.95635 1.69877 1.45336 1.40213 0.97951 0.86911 0.80408 0.83884 0.77458 1.20414 1.22149 1.18839 1.47893 1.49572 1.11811 1.22976 1.21593 1.01797 0.82868 0.99441 1.20375 0.78841 0.87152 0.84174 1.90643 1.57839 1.17174 1.76850 1.20899 1.00498 0.98487 0.95024 1.20306 0.94106 0.97565 0.97503 1.21814 0.94395 1.00734 1.00266 1.20377 0.97198 0.98374 0.96301 1.21588 0.96692 0.99936 0.97388 1.21576 0.95356 0.97715 1.00956 1.20321 0.98549 0.95445 0.97184 0.94861 0.92568 0.93202 0.92470 0.92887 0.90887 0.92690 0.89065 0.88910 0.88120 0.91506 0.91017 0.92027 0.92077 0.92081 0.91389 0.91469 0.90899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.50 8.65 37.16 0.32 -3.18 16 2 C 0.23 5.61 2.23 -69.09 -0.15 5.46 16 3 H 0.06 1.69 5.96 -51.93 -0.31 1.38 16 4 C -0.53 -14.75 8.95 -34.44 -0.31 -15.06 16 5 H 0.08 2.34 7.89 -52.48 -0.41 1.92 16 6 C 0.07 2.16 5.45 -17.82 -0.10 2.06 16 7 N -0.90 -27.25 13.96 55.43 0.77 -26.48 16 8 Si 0.88 22.15 24.37 -169.99 -4.14 18.00 16 9 H -0.28 -6.62 6.87 56.52 0.39 -6.23 16 10 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 11 H -0.26 -6.56 6.53 56.52 0.37 -6.19 16 12 N -0.59 -12.27 2.75 -175.26 -0.48 -12.76 16 13 C 0.09 1.41 9.48 59.85 0.57 1.98 16 14 C 0.51 10.20 7.67 -10.99 -0.08 10.12 16 15 O -0.55 -13.11 15.36 5.56 0.09 -13.03 16 16 C -0.11 -1.60 4.26 -29.03 -0.12 -1.72 16 17 C -0.09 -1.36 4.33 -100.94 -0.44 -1.79 16 18 C -0.15 -2.14 9.37 -35.90 -0.34 -2.48 16 19 C -0.09 -0.99 6.11 -28.17 -0.17 -1.16 16 20 C -0.12 -1.22 6.01 -26.51 -0.16 -1.38 16 21 C -0.12 -1.38 6.01 -26.52 -0.16 -1.54 16 22 C -0.08 -1.00 5.80 -28.18 -0.16 -1.16 16 23 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.06 1.13 6.66 -51.92 -0.35 0.78 16 25 H 0.05 1.13 3.27 -51.93 -0.17 0.96 16 26 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 27 H 0.05 0.88 8.14 -51.92 -0.42 0.45 16 28 H 0.07 1.18 6.43 -51.93 -0.33 0.85 16 29 H 0.05 0.68 6.44 -51.93 -0.33 0.34 16 30 H 0.09 1.11 7.37 -51.93 -0.38 0.72 16 31 H 0.09 1.24 7.76 -51.93 -0.40 0.83 16 32 H 0.10 1.41 7.74 -52.49 -0.41 1.01 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.59 8.12 -51.93 -0.42 0.17 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.91 8.12 -51.93 -0.42 0.49 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 310.49 15.07 4.68 4.68 Total: -1.00 -32.67 310.49 -6.90 -39.57 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -6.51 Total: -0.12 kcal Atomic # 6 Polarization: -8.56 SS G_CDS: -1.31 Total: -9.87 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 0.29 Total: -39.23 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: 0.09 Total: -13.03 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.14 Total: 18.00 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.67 -6.90 -39.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106771811.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.984 kcal (2) G-P(sol) polarization free energy of solvation -32.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds