Wall clock time and date at job start Sun Mar 29 2020 22:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47383 * 2 1 4 4 H 1.08997 * 109.47127 * 54.99850 * 3 2 1 5 5 C 1.50693 * 109.47285 * 175.00135 * 3 2 1 6 6 H 1.08000 * 120.00008 * 119.99470 * 5 3 2 7 7 C 1.37878 * 120.00018 * 300.00258 * 5 3 2 8 8 N 1.31513 * 120.00000 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00008 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47225 * 59.99548 * 9 7 5 11 11 H 1.48498 * 109.47225 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47205 * 299.99812 * 9 7 5 13 13 N 1.46501 * 109.46934 * 295.00349 * 3 2 1 14 14 C 1.34779 * 120.00143 * 84.99996 * 13 3 2 15 15 O 1.21279 * 119.99955 * 0.02562 * 14 13 3 16 16 C 1.50703 * 119.99869 * 179.97438 * 14 13 3 17 17 C 1.52997 * 109.46926 * 179.97438 * 16 14 13 18 18 H 1.09006 * 109.36003 * 304.72360 * 17 16 14 19 19 C 1.50070 * 109.36000 * 64.31041 * 17 16 14 20 20 C 1.29172 * 123.99416 * 137.29428 * 19 17 16 21 21 C 1.50070 * 124.28199 * 359.61667 * 20 19 17 22 22 C 1.53024 * 110.03521 * 17.04512 * 21 20 19 23 23 C 1.53019 * 109.35812 * 185.00193 * 17 16 14 24 24 H 1.08998 * 109.47593 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46965 * 299.99946 * 1 2 3 26 26 H 1.09004 * 109.47575 * 59.99886 * 1 2 3 27 27 H 1.08997 * 109.46449 * 239.99891 * 2 1 3 28 28 H 1.08998 * 109.46734 * 120.00296 * 2 1 3 29 29 H 0.96995 * 120.00216 * 180.02562 * 8 7 5 30 30 H 0.97007 * 119.99921 * 264.99763 * 13 3 2 31 31 H 1.09000 * 109.46688 * 60.00154 * 16 14 13 32 32 H 1.08998 * 109.47428 * 300.00071 * 16 14 13 33 33 H 1.07999 * 117.96134 * 317.36038 * 19 17 16 34 34 H 1.08001 * 117.75277 * 179.61802 * 20 19 17 35 35 H 1.09002 * 109.35777 * 256.90530 * 21 20 19 36 36 H 1.08998 * 109.35386 * 137.18228 * 21 20 19 37 37 H 1.08995 * 109.64445 * 70.32309 * 22 21 20 38 38 H 1.08998 * 109.64016 * 190.94942 * 22 21 20 39 39 H 1.08997 * 109.64626 * 70.67357 * 23 17 16 40 40 H 1.09001 * 109.81915 * 310.14490 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8887 -0.6524 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0049 0.8811 1.3817 10 1 6.4994 2.2813 1.3820 11 1 6.3978 0.2176 2.6507 12 1 6.5975 0.1472 0.2347 13 7 1.6524 2.0974 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3392 2.6328 -0.4340 16 6 0.0366 3.3387 -2.6544 17 6 -1.3826 3.8943 -2.5211 18 1 -2.0588 3.0916 -2.2267 19 6 -1.4006 4.9662 -1.4709 20 6 -2.0320 6.0865 -1.5931 21 6 -2.8292 6.4800 -2.8021 22 6 -3.1361 5.2452 -3.6523 23 6 -1.8315 4.4675 -3.8670 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8932 -0.5139 -0.8900 28 1 1.8932 -0.5139 0.8900 29 1 3.8292 -0.0605 2.9501 30 1 2.2719 2.1231 -1.9978 31 1 0.0679 2.6145 -3.4685 32 1 0.7280 4.1541 -2.8667 33 1 -0.8510 4.7900 -0.5580 34 1 -1.9817 6.7844 -0.7705 35 1 -2.2577 7.1940 -3.3951 36 1 -3.7642 6.9410 -2.4839 37 1 -3.8581 4.6139 -3.1344 38 1 -3.5406 5.5552 -4.6158 39 1 -2.0014 3.6547 -4.5731 40 1 -1.0654 5.1376 -4.2573 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187613908.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:56 Heat of formation + Delta-G solvation = -52.025309 kcal Electronic energy + Delta-G solvation = -18847.082039 eV Core-core repulsion = 16046.804565 eV Total energy + Delta-G solvation = -2800.277474 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.50181 -37.96986 -35.03103 -32.53943 -32.22795 -30.90496 -30.80086 -27.61923 -26.29539 -23.12070 -22.31308 -21.91771 -20.02678 -19.22687 -17.80105 -16.98435 -16.09905 -15.43706 -15.23528 -14.89464 -14.37033 -14.10837 -13.46216 -13.36485 -12.72189 -12.66772 -12.56877 -12.32710 -11.93743 -11.81992 -11.56010 -11.24091 -11.13376 -10.96573 -10.81466 -10.79123 -10.46982 -10.30553 -10.10431 -9.96697 -9.59274 -9.03247 -8.83189 -8.77319 -8.47138 -7.74793 -6.10482 -4.19895 2.56477 3.26061 3.31519 3.32559 3.50961 4.16055 4.40615 4.78621 4.81430 4.92398 5.20442 5.28410 5.29243 5.44221 5.55876 5.62747 5.66664 5.78007 5.85323 5.91525 5.94455 5.99229 6.13851 6.41562 6.42776 6.48547 6.49280 6.69215 6.95525 7.06868 7.19523 7.23762 7.40582 7.52425 7.64631 7.77350 7.93720 8.21242 8.73886 8.81361 9.22349 9.48122 10.94742 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.036915 B = 0.004679 C = 0.004497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.310738 B = 5982.511945 C = 6224.529637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.048 0.952 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.883 5.883 9 Si 0.900 3.100 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.712 5.712 14 C 0.499 3.501 15 O -0.548 6.548 16 C -0.137 4.137 17 C -0.042 4.042 18 H 0.087 0.913 19 C -0.122 4.122 20 C -0.183 4.183 21 C -0.086 4.086 22 C -0.120 4.120 23 C -0.116 4.116 24 H 0.021 0.979 25 H 0.049 0.951 26 H 0.039 0.961 27 H 0.030 0.970 28 H 0.098 0.902 29 H 0.264 0.736 30 H 0.387 0.613 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.115 0.885 34 H 0.097 0.903 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.385 7.396 -11.498 16.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.066 0.934 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.359 5.359 14 C 0.284 3.716 15 O -0.427 6.427 16 C -0.177 4.177 17 C -0.061 4.061 18 H 0.105 0.895 19 C -0.140 4.140 20 C -0.201 4.201 21 C -0.123 4.123 22 C -0.157 4.157 23 C -0.153 4.153 24 H 0.040 0.960 25 H 0.068 0.932 26 H 0.058 0.942 27 H 0.048 0.952 28 H 0.116 0.884 29 H 0.075 0.925 30 H 0.219 0.781 31 H 0.105 0.895 32 H 0.104 0.896 33 H 0.133 0.867 34 H 0.115 0.885 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.901 7.261 -10.606 15.634 hybrid contribution 1.415 -0.056 -0.131 1.422 sum -7.486 7.205 -10.737 14.941 Atomic orbital electron populations 1.21832 0.98353 0.97911 1.01252 1.21926 0.92608 0.99924 1.02148 1.18736 0.94034 0.89134 0.81245 0.93434 1.21216 0.90863 1.38982 1.06236 0.92224 1.24883 0.98525 0.94839 0.95408 1.69885 1.35176 1.37624 1.09318 0.86532 0.84983 0.78287 0.77432 1.20221 1.21143 1.20184 1.46527 1.14851 1.56152 1.18401 1.20397 0.82641 0.79231 0.89306 1.90652 1.51396 1.59876 1.40773 1.21730 0.97719 1.00912 0.97326 1.19813 0.95742 0.97072 0.93439 0.89524 1.22225 0.98359 0.93883 0.99537 1.21881 1.01229 0.98235 0.98800 1.20396 0.99126 0.97601 0.95191 1.21591 0.97645 0.97039 0.99441 1.21675 0.97427 0.99578 0.96665 0.96005 0.93195 0.94222 0.95157 0.88411 0.92549 0.78112 0.89533 0.89580 0.86676 0.88483 0.91495 0.91715 0.91771 0.92032 0.91808 0.91752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.52 37.16 0.32 -2.74 16 2 C -0.13 -3.11 5.45 -26.73 -0.15 -3.25 16 3 C 0.27 6.79 2.24 -69.09 -0.15 6.63 16 4 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 5 C -0.53 -14.12 8.73 -34.44 -0.30 -14.42 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.81 11.29 55.43 0.63 -24.18 16 9 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 13 N -0.71 -14.52 5.02 -54.94 -0.28 -14.80 16 14 C 0.50 9.52 6.03 -10.98 -0.07 9.45 16 15 O -0.55 -12.25 11.38 5.56 0.06 -12.18 16 16 C -0.14 -1.91 5.14 -27.88 -0.14 -2.05 16 17 C -0.04 -0.57 2.12 -92.07 -0.19 -0.77 16 18 H 0.09 1.31 7.96 -51.93 -0.41 0.90 16 19 C -0.12 -1.83 8.40 -35.83 -0.30 -2.13 16 20 C -0.18 -2.38 9.78 -35.83 -0.35 -2.73 16 21 C -0.09 -0.90 6.13 -28.18 -0.17 -1.07 16 22 C -0.12 -1.19 6.01 -26.51 -0.16 -1.35 16 23 C -0.12 -1.23 5.30 -26.52 -0.14 -1.37 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.05 1.20 7.85 -51.93 -0.41 0.79 16 26 H 0.04 0.85 5.65 -51.93 -0.29 0.56 16 27 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 29 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.39 6.89 8.54 -40.82 -0.35 6.54 16 31 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.12 2.06 6.47 -52.49 -0.34 1.72 16 34 H 0.10 1.21 8.06 -52.49 -0.42 0.78 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.68 8.12 -51.93 -0.42 0.25 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 LS Contribution 313.14 15.07 4.72 4.72 Total: -1.00 -29.11 313.14 -8.49 -37.60 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -6.69 Total: 7.34 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: -1.91 Total: -14.10 kcal Atomic # 7 Polarization: -39.33 SS G_CDS: 0.35 Total: -38.98 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.06 Total: -12.18 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.11 -8.49 -37.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187613908.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.424 kcal (2) G-P(sol) polarization free energy of solvation -29.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds