Wall clock time and date at job start Sun Mar 29 2020 22:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47383 * 2 1 4 4 H 1.08997 * 109.47127 * 54.99850 * 3 2 1 5 5 C 1.50693 * 109.47285 * 175.00135 * 3 2 1 6 6 H 1.08000 * 120.00008 * 119.99470 * 5 3 2 7 7 C 1.37878 * 120.00018 * 300.00258 * 5 3 2 8 8 N 1.31513 * 120.00000 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00008 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47225 * 59.99548 * 9 7 5 11 11 H 1.48498 * 109.47225 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47205 * 299.99812 * 9 7 5 13 13 N 1.46501 * 109.46934 * 295.00349 * 3 2 1 14 14 C 1.34779 * 120.00143 * 84.99996 * 13 3 2 15 15 O 1.21279 * 119.99955 * 0.02562 * 14 13 3 16 16 C 1.50703 * 119.99869 * 179.97438 * 14 13 3 17 17 C 1.52997 * 109.46926 * 179.97438 * 16 14 13 18 18 H 1.09006 * 109.36003 * 304.72360 * 17 16 14 19 19 C 1.50070 * 109.36000 * 64.31041 * 17 16 14 20 20 C 1.29172 * 123.99416 * 137.29428 * 19 17 16 21 21 C 1.50070 * 124.28199 * 359.61667 * 20 19 17 22 22 C 1.53024 * 110.03521 * 17.04512 * 21 20 19 23 23 C 1.53019 * 109.35812 * 185.00193 * 17 16 14 24 24 H 1.08998 * 109.47593 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46965 * 299.99946 * 1 2 3 26 26 H 1.09004 * 109.47575 * 59.99886 * 1 2 3 27 27 H 1.08997 * 109.46449 * 239.99891 * 2 1 3 28 28 H 1.08998 * 109.46734 * 120.00296 * 2 1 3 29 29 H 0.96995 * 120.00216 * 180.02562 * 8 7 5 30 30 H 0.97007 * 119.99921 * 264.99763 * 13 3 2 31 31 H 1.09000 * 109.46688 * 60.00154 * 16 14 13 32 32 H 1.08998 * 109.47428 * 300.00071 * 16 14 13 33 33 H 1.07999 * 117.96134 * 317.36038 * 19 17 16 34 34 H 1.08001 * 117.75277 * 179.61802 * 20 19 17 35 35 H 1.09002 * 109.35777 * 256.90530 * 21 20 19 36 36 H 1.08998 * 109.35386 * 137.18228 * 21 20 19 37 37 H 1.08995 * 109.64445 * 70.32309 * 22 21 20 38 38 H 1.08998 * 109.64016 * 190.94942 * 22 21 20 39 39 H 1.08997 * 109.64626 * 70.67357 * 23 17 16 40 40 H 1.09001 * 109.81915 * 310.14490 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8887 -0.6524 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0049 0.8811 1.3817 10 1 6.4994 2.2813 1.3820 11 1 6.3978 0.2176 2.6507 12 1 6.5975 0.1472 0.2347 13 7 1.6524 2.0974 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3392 2.6328 -0.4340 16 6 0.0366 3.3387 -2.6544 17 6 -1.3826 3.8943 -2.5211 18 1 -2.0588 3.0916 -2.2267 19 6 -1.4006 4.9662 -1.4709 20 6 -2.0320 6.0865 -1.5931 21 6 -2.8292 6.4800 -2.8021 22 6 -3.1361 5.2452 -3.6523 23 6 -1.8315 4.4675 -3.8670 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8932 -0.5139 -0.8900 28 1 1.8932 -0.5139 0.8900 29 1 3.8292 -0.0605 2.9501 30 1 2.2719 2.1231 -1.9978 31 1 0.0679 2.6145 -3.4685 32 1 0.7280 4.1541 -2.8667 33 1 -0.8510 4.7900 -0.5580 34 1 -1.9817 6.7844 -0.7705 35 1 -2.2577 7.1940 -3.3951 36 1 -3.7642 6.9410 -2.4839 37 1 -3.8581 4.6139 -3.1344 38 1 -3.5406 5.5552 -4.6158 39 1 -2.0014 3.6547 -4.5731 40 1 -1.0654 5.1376 -4.2573 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187613908.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:55 Heat of formation + Delta-G solvation = -68.973996 kcal Electronic energy + Delta-G solvation = -18847.816989 eV Core-core repulsion = 16046.804565 eV Total energy + Delta-G solvation = -2801.012425 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.92522 -39.16660 -36.86578 -34.26742 -33.62831 -32.56571 -31.84623 -29.27694 -27.74433 -24.99466 -23.39580 -22.96688 -21.73849 -20.95662 -18.82274 -18.75765 -17.44642 -17.12505 -16.77772 -16.35113 -16.07774 -15.06342 -14.93202 -14.69343 -14.56265 -13.81128 -13.75336 -13.50384 -13.37395 -13.20402 -13.06423 -12.99445 -12.82133 -12.65666 -12.31658 -12.17801 -12.01579 -11.66500 -11.56996 -11.33832 -11.04802 -10.95764 -10.55243 -10.35527 -9.84963 -9.53832 -8.15571 -6.33178 1.44080 1.45952 1.47004 1.53743 1.98841 2.37718 2.76755 3.13569 3.81260 3.87192 4.00793 4.14904 4.34629 4.47489 4.49671 4.57422 4.57737 4.58039 4.75776 4.77481 4.86615 4.89541 4.96167 5.07976 5.11630 5.14377 5.26749 5.27709 5.45262 5.48426 5.54289 5.57420 5.67821 5.81612 5.86103 5.96848 6.15163 6.19483 6.76101 7.09553 7.35041 7.70560 8.89459 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.036915 B = 0.004679 C = 0.004497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.310738 B = 5982.511945 C = 6224.529637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.120 4.120 3 C 0.278 3.722 4 H -0.007 1.007 5 C -0.549 4.549 6 H 0.071 0.929 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.970 3.030 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.264 1.264 13 N -0.711 5.711 14 C 0.493 3.507 15 O -0.585 6.585 16 C -0.124 4.124 17 C -0.038 4.038 18 H 0.064 0.936 19 C -0.152 4.152 20 C -0.168 4.168 21 C -0.086 4.086 22 C -0.120 4.120 23 C -0.109 4.109 24 H 0.044 0.956 25 H 0.022 0.978 26 H 0.046 0.954 27 H 0.040 0.960 28 H 0.069 0.931 29 H 0.264 0.736 30 H 0.402 0.598 31 H 0.118 0.882 32 H 0.105 0.895 33 H 0.073 0.927 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.053 0.947 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.199 8.245 -14.473 18.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.159 4.159 3 C 0.175 3.825 4 H 0.011 0.989 5 C -0.588 4.588 6 H 0.089 0.911 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.794 3.206 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.188 1.188 13 N -0.360 5.360 14 C 0.280 3.720 15 O -0.466 6.466 16 C -0.163 4.163 17 C -0.057 4.057 18 H 0.082 0.918 19 C -0.170 4.170 20 C -0.186 4.186 21 C -0.123 4.123 22 C -0.157 4.157 23 C -0.147 4.147 24 H 0.063 0.937 25 H 0.041 0.959 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.087 0.913 29 H 0.073 0.927 30 H 0.237 0.763 31 H 0.136 0.864 32 H 0.123 0.877 33 H 0.091 0.909 34 H 0.113 0.887 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.072 0.928 38 H 0.106 0.894 39 H 0.100 0.900 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.716 8.124 -13.624 18.099 hybrid contribution 1.286 -0.247 0.858 1.565 sum -7.430 7.878 -12.766 16.740 Atomic orbital electron populations 1.21662 0.96964 0.98984 1.00263 1.21771 0.93751 0.99288 1.01125 1.18292 0.93428 0.89103 0.81706 0.98875 1.21585 0.91634 1.38868 1.06672 0.91127 1.25780 1.03311 0.94396 0.95031 1.70049 1.37130 1.38419 1.09839 0.85439 0.79149 0.78414 0.77574 1.19732 1.21227 1.18825 1.46323 1.15963 1.56396 1.17338 1.21374 0.81489 0.78323 0.90766 1.90644 1.52370 1.60924 1.42711 1.21743 0.98307 1.01632 0.94658 1.19787 0.94989 0.96006 0.94922 0.91763 1.22066 1.00186 0.95720 0.99014 1.22162 0.99578 0.97062 0.99794 1.20485 0.99416 0.98350 0.94057 1.21624 0.97157 0.96459 1.00488 1.21659 0.97988 1.00367 0.94660 0.93744 0.95864 0.93476 0.94082 0.91279 0.92668 0.76316 0.86397 0.87658 0.90917 0.88670 0.89694 0.90327 0.92774 0.89412 0.90035 0.90555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.56 8.52 71.98 0.61 -4.95 16 2 C -0.12 -6.02 5.45 30.59 0.17 -5.85 16 3 C 0.28 14.45 2.24 44.24 0.10 14.55 16 4 H -0.01 -0.41 7.58 -2.39 -0.02 -0.43 16 5 C -0.55 -29.36 8.73 25.60 0.22 -29.14 16 6 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 7 C 0.01 0.80 5.29 84.65 0.45 1.25 16 8 N -0.92 -53.13 11.29 21.45 0.24 -52.89 16 9 Si 0.97 42.38 29.54 68.60 2.03 44.40 16 10 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 11 H -0.29 -12.47 7.11 99.48 0.71 -11.76 16 12 H -0.26 -10.92 7.11 99.48 0.71 -10.22 16 13 N -0.71 -29.19 5.02 -446.11 -2.24 -31.43 16 14 C 0.49 19.01 6.03 87.66 0.53 19.54 16 15 O -0.59 -27.49 11.38 -3.03 -0.03 -27.53 16 16 C -0.12 -3.24 5.14 29.85 0.15 -3.08 16 17 C -0.04 -1.00 2.12 -11.73 -0.02 -1.03 16 18 H 0.06 1.95 7.96 -2.38 -0.02 1.93 16 19 C -0.15 -4.60 8.40 27.30 0.23 -4.37 16 20 C -0.17 -4.21 9.78 27.30 0.27 -3.95 16 21 C -0.09 -1.54 6.13 29.66 0.18 -1.36 16 22 C -0.12 -2.00 6.01 30.73 0.18 -1.81 16 23 C -0.11 -1.96 5.30 30.73 0.16 -1.80 16 24 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.02 1.14 7.85 -2.38 -0.02 1.12 16 26 H 0.05 2.06 5.65 -2.39 -0.01 2.04 16 27 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.07 3.88 5.95 -2.39 -0.01 3.86 16 29 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 30 H 0.40 13.89 8.54 -92.70 -0.79 13.10 16 31 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 32 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.07 2.80 6.47 -2.91 -0.02 2.78 16 34 H 0.10 2.35 8.06 -2.91 -0.02 2.33 16 35 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.05 1.02 8.12 -2.39 -0.02 1.00 16 38 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.08 1.20 8.14 -2.39 -0.02 1.19 16 40 H 0.08 1.22 8.10 -2.39 -0.02 1.20 16 Total: -1.00 -66.42 313.14 3.44 -62.98 By element: Atomic # 1 Polarization: 26.25 SS G_CDS: 0.22 Total: 26.47 kcal Atomic # 6 Polarization: -25.24 SS G_CDS: 3.23 Total: -22.01 kcal Atomic # 7 Polarization: -82.32 SS G_CDS: -2.00 Total: -84.32 kcal Atomic # 8 Polarization: -27.49 SS G_CDS: -0.03 Total: -27.53 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.40 kcal Total: -66.42 3.44 -62.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187613908.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.992 kcal (2) G-P(sol) polarization free energy of solvation -66.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds