Wall clock time and date at job start Sun Mar 29 2020 22:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47217 * 2 1 4 4 H 1.08996 * 109.47413 * 55.00198 * 3 2 1 5 5 C 1.50702 * 109.47159 * 174.99915 * 3 2 1 6 6 H 1.07998 * 120.00214 * 119.99953 * 5 3 2 7 7 C 1.37877 * 120.00019 * 300.00238 * 5 3 2 8 8 N 1.31519 * 119.99779 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00256 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47031 * 59.99494 * 9 7 5 11 11 H 1.48492 * 109.47276 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47052 * 300.00023 * 9 7 5 13 13 N 1.46499 * 109.47036 * 294.99580 * 3 2 1 14 14 C 1.34780 * 119.99695 * 85.00652 * 13 3 2 15 15 O 1.21284 * 119.99869 * 359.97438 * 14 13 3 16 16 C 1.50699 * 119.99902 * 180.02562 * 14 13 3 17 17 H 1.09005 * 115.57317 * 34.14486 * 16 14 13 18 18 C 1.52306 * 117.53725 * 179.97438 * 16 14 13 19 19 H 1.09002 * 115.91353 * 0.84927 * 18 16 14 20 20 C 1.52077 * 119.83960 * 216.45479 * 18 16 14 21 21 C 1.51671 * 111.16985 * 311.42992 * 20 18 16 22 22 C 1.53305 * 108.14675 * 304.46538 * 21 20 18 23 23 C 1.52881 * 108.58205 * 74.54881 * 22 21 20 24 24 C 1.52072 * 60.63855 * 107.37812 * 18 16 14 25 25 H 1.08997 * 117.24942 * 252.86776 * 24 18 16 26 26 H 1.09005 * 109.47177 * 300.00457 * 1 2 3 27 27 H 1.09007 * 109.47229 * 60.00046 * 1 2 3 28 28 H 1.09001 * 109.47596 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47019 * 239.99284 * 2 1 3 30 30 H 1.09003 * 109.46566 * 119.99650 * 2 1 3 31 31 H 0.96998 * 119.99865 * 179.97438 * 8 7 5 32 32 H 0.96997 * 120.00140 * 265.00136 * 13 3 2 33 33 H 1.09006 * 109.26437 * 70.71634 * 20 18 16 34 34 H 1.08997 * 109.26814 * 190.18230 * 20 18 16 35 35 H 1.08998 * 109.75056 * 184.92318 * 21 20 18 36 36 H 1.08997 * 110.07357 * 64.19199 * 21 20 18 37 37 H 1.09009 * 109.61770 * 314.82211 * 22 21 20 38 38 H 1.08996 * 109.61891 * 194.27636 * 22 21 20 39 39 H 1.08995 * 109.35356 * 185.27160 * 23 22 21 40 40 H 1.08999 * 109.35380 * 65.68400 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1472 1.8888 -0.6522 7 6 4.1433 0.8783 1.2280 8 7 3.4061 0.3373 2.1733 9 14 6.0050 0.8798 1.3812 10 1 6.5005 2.2797 1.3808 11 1 6.3977 0.2165 2.6504 12 1 6.5966 0.1450 0.2344 13 7 1.6525 2.0974 -1.2518 14 6 0.4352 2.6644 -1.3670 15 8 -0.3395 2.6320 -0.4344 16 6 0.0364 3.3376 -2.6549 17 1 0.4314 2.8849 -3.5644 18 6 -1.3523 3.9594 -2.7238 19 1 -1.9546 3.8812 -1.8187 20 6 -2.1451 3.8988 -4.0201 21 6 -1.2991 4.3365 -5.2005 22 6 -0.7506 5.7365 -4.9018 23 6 0.3697 5.6108 -3.8691 24 6 -0.1335 4.8646 -2.6354 25 1 0.0427 5.3732 -1.6876 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8901 31 1 3.8291 -0.0612 2.9499 32 1 2.2720 2.1230 -1.9978 33 1 -2.4687 2.8729 -4.1962 34 1 -3.0208 4.5423 -3.9366 35 1 -1.9120 4.3681 -6.1013 36 1 -0.4713 3.6424 -5.3452 37 1 -1.5474 6.3643 -4.5027 38 1 -0.3567 6.1782 -5.8171 39 1 0.7055 6.6059 -3.5775 40 1 1.2046 5.0636 -4.3067 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000246023311.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:31 Heat of formation + Delta-G solvation = -60.559768 kcal Electronic energy + Delta-G solvation = -18970.705286 eV Core-core repulsion = 16170.057730 eV Total energy + Delta-G solvation = -2800.647556 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.39929 -39.56137 -36.88804 -34.29335 -33.99654 -32.69200 -31.66926 -29.12212 -26.43913 -24.93620 -23.43020 -23.24958 -21.57156 -21.00981 -19.47733 -18.78409 -17.77079 -17.19653 -16.40710 -16.21221 -15.91130 -15.01442 -14.87851 -14.79798 -14.59364 -14.50107 -13.79875 -13.49360 -13.21039 -13.18960 -13.07050 -12.91922 -12.68018 -12.66108 -12.19772 -12.09838 -11.95116 -11.72068 -11.60045 -11.15058 -11.08274 -10.86786 -10.63768 -10.56733 -10.40017 -9.61816 -8.16778 -6.34668 1.43911 1.45986 1.53868 1.70562 2.34729 2.61117 2.89534 3.12492 3.75320 3.77819 3.81790 4.05253 4.19389 4.25110 4.40737 4.44521 4.46290 4.54706 4.68421 4.71971 4.74290 4.87519 4.99973 5.06341 5.08487 5.14806 5.23661 5.29167 5.36521 5.38670 5.42011 5.48895 5.54518 5.57698 5.63123 5.78028 5.92994 6.15722 6.73329 7.02268 7.32867 7.61530 8.88506 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.031319 B = 0.005214 C = 0.004701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.824153 B = 5368.566960 C = 5954.667081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.120 4.120 3 C 0.278 3.722 4 H -0.006 1.006 5 C -0.550 4.550 6 H 0.071 0.929 7 C 0.016 3.984 8 N -0.916 5.916 9 Si 0.971 3.029 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.264 1.264 13 N -0.702 5.702 14 C 0.523 3.477 15 O -0.594 6.594 16 C -0.191 4.191 17 H 0.141 0.859 18 C -0.104 4.104 19 H 0.084 0.916 20 C -0.084 4.084 21 C -0.122 4.122 22 C -0.115 4.115 23 C -0.087 4.087 24 C -0.111 4.111 25 H 0.083 0.917 26 H 0.023 0.977 27 H 0.042 0.958 28 H 0.046 0.954 29 H 0.041 0.959 30 H 0.072 0.928 31 H 0.265 0.735 32 H 0.402 0.598 33 H 0.066 0.934 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.124 8.026 -16.238 19.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.159 4.159 3 C 0.174 3.826 4 H 0.012 0.988 5 C -0.588 4.588 6 H 0.089 0.911 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.796 3.204 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.188 1.188 13 N -0.350 5.350 14 C 0.311 3.689 15 O -0.476 6.476 16 C -0.212 4.212 17 H 0.158 0.842 18 C -0.123 4.123 19 H 0.102 0.898 20 C -0.121 4.121 21 C -0.159 4.159 22 C -0.153 4.153 23 C -0.125 4.125 24 C -0.130 4.130 25 H 0.101 0.899 26 H 0.042 0.958 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.237 0.763 33 H 0.085 0.915 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.625 7.888 -15.386 18.516 hybrid contribution 1.170 -0.351 0.754 1.436 sum -5.455 7.537 -14.632 17.339 Atomic orbital electron populations 1.21669 0.97054 0.99104 1.00146 1.21779 0.93691 0.99192 1.01278 1.18356 0.93684 0.89139 0.81383 0.98809 1.21545 0.91371 1.39073 1.06776 0.91138 1.25789 1.03438 0.94296 0.94935 1.70050 1.37196 1.38294 1.09855 0.85410 0.78940 0.78450 0.77608 1.19687 1.21113 1.18841 1.46204 1.15442 1.55895 1.17466 1.20333 0.81574 0.77962 0.89060 1.90626 1.52710 1.61653 1.42618 1.22490 1.04512 0.97883 0.96336 0.84167 1.21882 0.89252 1.00490 1.00649 0.89775 1.20677 0.97971 1.02231 0.91260 1.21450 0.99795 0.97066 0.97589 1.21585 0.97885 0.97164 0.98630 1.21128 0.98576 0.99993 0.92779 1.22359 1.01226 0.88727 1.00718 0.89875 0.95764 0.93849 0.93488 0.94045 0.90975 0.92581 0.76318 0.91527 0.89957 0.89869 0.91869 0.91552 0.90120 0.90608 0.90729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.74 8.51 71.98 0.61 -5.13 16 2 C -0.12 -6.12 5.45 30.59 0.17 -5.95 16 3 C 0.28 14.69 2.24 44.24 0.10 14.79 16 4 H -0.01 -0.38 7.58 -2.39 -0.02 -0.39 16 5 C -0.55 -29.63 8.73 25.60 0.22 -29.41 16 6 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 7 C 0.02 0.84 5.29 84.65 0.45 1.29 16 8 N -0.92 -53.17 11.29 21.45 0.24 -52.93 16 9 Si 0.97 42.44 29.54 68.60 2.03 44.47 16 10 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 11 H -0.29 -12.37 7.11 99.48 0.71 -11.67 16 12 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 13 N -0.70 -30.17 5.02 -446.10 -2.24 -32.41 16 14 C 0.52 21.61 6.19 87.66 0.54 22.15 16 15 O -0.59 -29.53 13.33 -3.04 -0.04 -29.58 16 16 C -0.19 -5.66 5.32 -11.55 -0.06 -5.72 16 17 H 0.14 3.43 7.27 -2.38 -0.02 3.41 16 18 C -0.10 -2.76 5.61 -11.63 -0.07 -2.83 16 19 H 0.08 2.72 7.55 -2.39 -0.02 2.70 16 20 C -0.08 -1.58 5.80 29.85 0.17 -1.41 16 21 C -0.12 -1.80 5.69 30.26 0.17 -1.63 16 22 C -0.12 -1.65 5.92 30.66 0.18 -1.47 16 23 C -0.09 -1.60 5.83 30.46 0.18 -1.42 16 24 C -0.11 -2.87 5.90 -10.98 -0.06 -2.94 16 25 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 26 H 0.02 1.21 7.85 -2.38 -0.02 1.20 16 27 H 0.04 1.97 5.65 -2.38 -0.01 1.96 16 28 H 0.05 1.92 8.14 -2.39 -0.02 1.91 16 29 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.07 4.07 5.95 -2.39 -0.01 4.06 16 31 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 32 H 0.40 14.77 8.54 -92.71 -0.79 13.98 16 33 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 34 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.06 0.98 7.12 -2.39 -0.02 0.96 16 37 H 0.07 0.96 8.03 -2.38 -0.02 0.94 16 38 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.07 1.29 8.06 -2.39 -0.02 1.28 16 Total: -1.00 -66.31 311.76 2.82 -63.49 By element: Atomic # 1 Polarization: 26.40 SS G_CDS: 0.23 Total: 26.63 kcal Atomic # 6 Polarization: -22.27 SS G_CDS: 2.61 Total: -19.67 kcal Atomic # 7 Polarization: -83.34 SS G_CDS: -2.00 Total: -85.34 kcal Atomic # 8 Polarization: -29.53 SS G_CDS: -0.04 Total: -29.58 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -66.31 2.82 -63.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246023311.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.930 kcal (2) G-P(sol) polarization free energy of solvation -66.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds