Wall clock time and date at job start Sun Mar 29 2020 22:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47358 * 2 1 4 4 N 1.46508 * 109.46765 * 119.99672 * 2 1 3 5 5 C 1.46504 * 119.99930 * 117.07505 * 4 2 1 6 6 C 1.50701 * 109.47294 * 270.00423 * 5 4 2 7 7 H 1.08004 * 119.99692 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99903 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99972 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99776 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.47285 * 89.99895 * 10 8 6 12 12 H 1.48503 * 109.46902 * 209.99325 * 10 8 6 13 13 H 1.48496 * 109.47338 * 329.99606 * 10 8 6 14 14 C 1.34771 * 120.00048 * 297.07961 * 4 2 1 15 15 O 1.21281 * 120.00011 * 5.10385 * 14 4 2 16 16 C 1.50700 * 120.00061 * 185.10462 * 14 4 2 17 17 H 1.08998 * 115.51488 * 326.75539 * 16 14 4 18 18 C 1.52998 * 117.46141 * 112.23918 * 16 14 4 19 19 H 1.08999 * 119.29915 * 356.28836 * 18 16 14 20 20 C 1.54270 * 118.19993 * 201.21861 * 18 16 14 21 21 C 1.54888 * 104.19331 * 272.20719 * 20 18 16 22 22 C 1.54895 * 102.75031 * 37.94122 * 21 20 18 23 23 C 1.52996 * 117.46052 * 181.27722 * 16 14 4 24 24 H 1.09002 * 119.30330 * 4.64974 * 23 16 14 25 25 H 1.08996 * 109.47329 * 300.00522 * 1 2 3 26 26 H 1.09008 * 109.46367 * 60.00110 * 1 2 3 27 27 H 1.08998 * 109.47346 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47329 * 239.99478 * 2 1 3 29 29 H 1.09003 * 109.46713 * 172.62593 * 3 2 1 30 30 H 1.08994 * 109.46853 * 292.62850 * 3 2 1 31 31 H 1.08996 * 109.47046 * 52.63072 * 3 2 1 32 32 H 1.08998 * 109.46624 * 30.00181 * 5 4 2 33 33 H 1.08998 * 109.46763 * 150.00111 * 5 4 2 34 34 H 0.97001 * 119.99605 * 180.02562 * 9 8 6 35 35 H 1.09001 * 110.48919 * 153.53003 * 20 18 16 36 36 H 1.09002 * 110.48548 * 30.88381 * 20 18 16 37 37 H 1.09001 * 110.75978 * 279.62640 * 21 20 18 38 38 H 1.08999 * 110.91797 * 156.32577 * 21 20 18 39 39 H 1.09000 * 110.48943 * 203.37848 * 22 21 20 40 40 H 1.09002 * 110.59933 * 80.79021 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.8069 -1.9181 1.0629 6 6 1.8845 -3.1098 1.0589 7 1 0.8176 -2.9672 1.1474 8 6 2.4028 -4.3822 0.9435 9 7 3.7020 -4.5559 0.8363 10 14 1.2595 -5.8595 0.9392 11 1 0.8528 -6.1667 -0.4556 12 1 1.9632 -7.0316 1.5191 13 1 0.0538 -5.5547 1.7507 14 6 1.7419 -0.1968 2.4194 15 8 1.0127 0.7655 2.5343 16 6 2.3391 -0.8402 3.6444 17 1 2.4813 -1.9193 3.5858 18 6 3.3738 -0.0337 4.4316 19 1 3.6894 0.9397 4.0562 20 6 4.3468 -0.7983 5.3528 21 6 3.5914 -0.9013 6.7011 22 6 2.1273 -1.1401 6.2553 23 6 1.9628 -0.2510 5.0053 24 1 1.2273 0.5520 5.0540 25 1 -0.3634 0.5139 0.8899 26 1 -0.3632 0.5139 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 3.1221 1.4452 0.1319 30 1 1.7884 1.9168 -0.9485 31 1 1.5732 1.9929 0.8167 32 1 3.3679 -1.8897 0.1288 33 1 3.4997 -1.9975 1.9006 34 1 4.0666 -5.4511 0.7547 35 1 5.2740 -0.2389 5.4768 36 1 4.5501 -1.7916 4.9526 37 1 3.6771 0.0281 7.2640 38 1 3.9580 -1.7426 7.2893 39 1 1.4348 -0.8300 7.0379 40 1 1.9699 -2.1883 6.0012 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250514378.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:02 Heat of formation + Delta-G solvation = -26.482414 kcal Electronic energy + Delta-G solvation = -19399.746147 eV Core-core repulsion = 16600.576296 eV Total energy + Delta-G solvation = -2799.169851 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.96056 -38.19447 -35.25748 -33.19462 -31.82180 -30.80131 -27.97650 -26.97514 -26.57038 -24.10294 -22.70603 -21.23631 -20.03952 -19.34654 -18.07435 -16.66460 -16.15077 -15.44614 -15.01933 -14.53078 -14.34593 -13.98601 -13.36276 -12.99277 -12.90773 -12.64284 -12.37681 -12.13513 -11.78173 -11.48434 -11.39634 -11.19127 -10.98643 -10.94202 -10.91649 -10.87140 -10.65143 -10.63637 -10.35697 -10.02672 -9.69503 -9.58505 -9.35764 -8.73454 -8.52250 -7.64663 -6.16227 -4.23293 3.20335 3.23246 3.30506 3.35240 3.87027 4.20276 4.35790 4.83766 5.06174 5.08718 5.16830 5.41178 5.49354 5.53941 5.67957 5.72972 5.73947 5.78354 5.86987 5.96035 6.00794 6.09576 6.11092 6.21398 6.25411 6.27161 6.38390 6.48740 6.51196 6.58511 6.71376 6.79530 6.85662 6.91803 7.24136 7.65711 7.79897 8.09408 8.42280 8.83715 9.11018 9.44631 10.90189 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.013982 B = 0.009359 C = 0.006502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.064972 B = 2990.993187 C = 4305.175186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.148 3.852 3 C -0.165 4.165 4 N -0.588 5.588 5 C 0.237 3.763 6 C -0.535 4.535 7 H 0.061 0.939 8 C 0.065 3.935 9 N -0.892 5.892 10 Si 0.894 3.106 11 H -0.279 1.279 12 H -0.285 1.285 13 H -0.273 1.273 14 C 0.550 3.450 15 O -0.571 6.571 16 C -0.146 4.146 17 H 0.133 0.867 18 C -0.140 4.140 19 H 0.106 0.894 20 C -0.096 4.096 21 C -0.121 4.121 22 C -0.097 4.097 23 C -0.140 4.140 24 H 0.115 0.885 25 H 0.072 0.928 26 H 0.049 0.951 27 H 0.056 0.944 28 H 0.082 0.918 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.033 0.967 33 H 0.041 0.959 34 H 0.264 0.736 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.235 6.795 5.750 8.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.045 3.955 3 C -0.223 4.223 4 N -0.318 5.318 5 C 0.117 3.883 6 C -0.574 4.574 7 H 0.079 0.921 8 C -0.138 4.138 9 N -0.530 5.530 10 Si 0.722 3.278 11 H -0.206 1.206 12 H -0.211 1.211 13 H -0.198 1.198 14 C 0.338 3.662 15 O -0.453 6.453 16 C -0.167 4.167 17 H 0.150 0.850 18 C -0.159 4.159 19 H 0.124 0.876 20 C -0.133 4.133 21 C -0.159 4.159 22 C -0.134 4.134 23 C -0.158 4.158 24 H 0.133 0.867 25 H 0.091 0.909 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.100 0.900 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.051 0.949 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.026 7.127 5.758 9.162 hybrid contribution -0.507 -1.116 -0.283 1.258 sum -0.481 6.011 5.475 8.145 Atomic orbital electron populations 1.22164 0.95759 1.02195 1.02053 1.20824 0.94242 0.92234 0.88241 1.22189 1.00881 0.97088 1.02098 1.48225 1.52708 1.26809 1.04048 1.19466 0.90794 0.79593 0.98408 1.21532 0.93921 0.90756 1.51152 0.92118 1.24934 0.95104 0.98923 0.94857 1.69929 1.10888 1.22727 1.49464 0.86546 0.80865 0.82013 0.78383 1.20551 1.21075 1.19767 1.19388 0.80206 0.82614 0.83980 1.90511 1.38732 1.29246 1.86812 1.22466 1.02505 1.01215 0.90492 0.84964 1.23110 0.91100 1.00137 1.01550 0.87571 1.21979 0.97035 1.00501 0.93832 1.22659 0.94966 1.01191 0.97035 1.21986 0.96325 0.99647 0.95492 1.23165 0.98814 1.02169 0.91668 0.86693 0.90907 0.93161 0.92448 0.89978 0.93163 0.92729 0.90872 0.94882 0.94082 0.92595 0.91426 0.90725 0.91647 0.91527 0.91487 0.91091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.01 9.16 37.16 0.34 -2.67 16 2 C 0.15 2.84 3.28 -67.92 -0.22 2.62 16 3 C -0.16 -2.78 8.95 37.16 0.33 -2.44 16 4 N -0.59 -12.67 2.41 -167.46 -0.40 -13.07 16 5 C 0.24 5.71 4.82 -5.19 -0.03 5.69 16 6 C -0.53 -14.04 9.30 -34.44 -0.32 -14.36 16 7 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 8 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 9 N -0.89 -24.56 13.29 55.43 0.74 -23.83 16 10 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 13 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 14 C 0.55 11.72 6.86 -10.99 -0.08 11.64 16 15 O -0.57 -12.73 12.65 5.56 0.07 -12.65 16 16 C -0.15 -2.81 4.48 -91.77 -0.41 -3.22 16 17 H 0.13 2.79 6.92 -51.93 -0.36 2.43 16 18 C -0.14 -2.27 6.64 -89.51 -0.59 -2.87 16 19 H 0.11 1.71 8.14 -51.93 -0.42 1.29 16 20 C -0.10 -1.32 6.63 -25.07 -0.17 -1.49 16 21 C -0.12 -1.46 6.91 -24.74 -0.17 -1.64 16 22 C -0.10 -1.33 6.63 -25.06 -0.17 -1.49 16 23 C -0.14 -2.29 6.39 -89.51 -0.57 -2.86 16 24 H 0.12 1.96 7.79 -51.93 -0.40 1.56 16 25 H 0.07 1.45 6.21 -51.93 -0.32 1.12 16 26 H 0.05 0.77 8.14 -51.92 -0.42 0.35 16 27 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.08 1.55 7.78 -51.93 -0.40 1.15 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.07 1.34 6.38 -51.93 -0.33 1.01 16 32 H 0.03 0.84 7.90 -51.93 -0.41 0.43 16 33 H 0.04 1.02 6.39 -51.93 -0.33 0.69 16 34 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 319.75 15.07 4.82 4.82 Total: -1.00 -27.92 319.75 -8.71 -36.63 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -6.76 Total: 3.89 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: -2.15 Total: -11.48 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: 0.33 Total: -36.90 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: 0.07 Total: -12.65 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -27.92 -8.71 -36.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250514378.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.143 kcal (2) G-P(sol) polarization free energy of solvation -27.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds