Wall clock time and date at job start Sun Mar 29 2020 23:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47661 * 2 1 4 4 C 1.50707 * 109.46759 * 240.00114 * 2 1 3 5 5 H 1.07993 * 120.00057 * 240.00005 * 4 2 1 6 6 C 1.37878 * 119.99849 * 60.00501 * 4 2 1 7 7 N 1.31517 * 119.99749 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00230 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47652 * 89.99439 * 8 6 4 10 10 H 1.48506 * 109.47340 * 209.99712 * 8 6 4 11 11 H 1.48506 * 109.46961 * 329.99318 * 8 6 4 12 12 N 1.46495 * 109.47497 * 120.00642 * 2 1 3 13 13 C 1.46503 * 120.00212 * 59.99085 * 12 2 1 14 14 C 1.34773 * 120.00306 * 239.99509 * 12 2 1 15 15 O 1.21617 * 119.99719 * 0.02562 * 14 12 2 16 16 C 1.47102 * 120.00343 * 179.97438 * 14 12 2 17 17 C 1.32996 * 119.99982 * 179.97438 * 16 14 12 18 18 C 1.51931 * 126.38658 * 179.97438 * 17 16 14 19 19 C 1.54880 * 104.43513 * 156.21763 * 18 17 16 20 20 C 1.54985 * 102.33483 * 37.64690 * 19 18 17 21 21 H 1.08998 * 110.69509 * 81.54582 * 20 19 18 22 22 C 1.53009 * 110.56753 * 204.34850 * 20 19 18 23 23 C 1.51450 * 126.34148 * 0.02562 * 17 16 14 24 24 H 1.09003 * 109.47531 * 59.99313 * 1 2 3 25 25 H 1.08997 * 109.47661 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46700 * 299.99751 * 1 2 3 27 27 H 0.97008 * 119.99673 * 180.02562 * 7 6 4 28 28 H 1.08991 * 109.47449 * 270.00521 * 13 12 2 29 29 H 1.09005 * 109.47019 * 30.00823 * 13 12 2 30 30 H 1.09003 * 109.47386 * 150.00096 * 13 12 2 31 31 H 1.07996 * 120.00025 * 0.02562 * 16 14 12 32 32 H 1.08998 * 110.41946 * 37.48678 * 18 17 16 33 33 H 1.09003 * 110.56163 * 275.02119 * 18 17 16 34 34 H 1.09006 * 110.83589 * 279.43520 * 19 18 17 35 35 H 1.09007 * 110.83558 * 155.85839 * 19 18 17 36 36 H 1.08999 * 109.46414 * 175.78440 * 22 20 19 37 37 H 1.09004 * 109.47034 * 295.78417 * 22 20 19 38 38 H 1.08997 * 109.46679 * 55.78332 * 22 20 19 39 39 H 1.09002 * 109.98686 * 60.98001 * 23 17 16 40 40 H 1.09004 * 109.98055 * 299.71947 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.6530 -1.5885 -1.1315 6 6 1.6991 -0.2392 -2.4828 7 7 0.9427 0.8299 -2.6033 8 14 2.3210 -1.1201 -4.0081 9 1 1.3424 -2.1614 -4.4121 10 1 2.4862 -0.1411 -5.1124 11 1 3.6290 -1.7582 -3.7125 12 7 2.0183 -0.6907 1.1960 13 6 1.6643 -2.0933 1.4279 14 6 2.7933 -0.0359 2.0832 15 8 3.0867 1.1286 1.8910 16 6 3.2833 -0.7293 3.2844 17 6 4.0484 -0.0832 4.1596 18 6 4.6306 -0.6539 5.4416 19 6 5.8656 0.2340 5.7336 20 6 5.3717 1.6393 5.3055 21 1 4.7761 2.0956 6.0961 22 6 6.5557 2.5369 4.9401 23 6 4.5003 1.3591 4.0636 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 0.7081 1.1611 -3.4844 28 1 0.7376 -2.1445 1.9992 29 1 1.5294 -2.5970 0.4706 30 1 2.4628 -2.5821 1.9861 31 1 3.0223 -1.7632 3.4553 32 1 4.9335 -1.6904 5.2933 33 1 3.9089 -0.5818 6.2552 34 1 6.7185 -0.0776 5.1304 35 1 6.1132 0.2168 6.7950 36 1 6.1859 3.4936 4.5711 37 1 7.1726 2.7021 5.8235 38 1 7.1519 2.0546 4.1656 39 1 3.6345 2.0213 4.0589 40 1 5.0864 1.5062 3.1564 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267855286.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:11:29 Heat of formation + Delta-G solvation = -37.645450 kcal Electronic energy + Delta-G solvation = -18746.884814 eV Core-core repulsion = 15947.230898 eV Total energy + Delta-G solvation = -2799.653917 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.29911 -37.96708 -35.21287 -32.92399 -32.36051 -29.97886 -29.13814 -26.78728 -25.95836 -25.17935 -24.13692 -21.39874 -20.07036 -18.99351 -17.49802 -16.60194 -16.26808 -15.48970 -15.20966 -14.58803 -14.25228 -13.82314 -13.65462 -13.03827 -12.97513 -12.53638 -12.41690 -12.14976 -12.08282 -11.65522 -11.45751 -11.42463 -11.06217 -11.03460 -10.82568 -10.79379 -10.64778 -10.52286 -10.45535 -10.20643 -10.12661 -9.12289 -8.80015 -8.74920 -8.37958 -7.45458 -6.03405 -4.11126 1.84011 3.28410 3.35396 3.38604 4.02914 4.10425 4.41894 4.55689 4.69601 4.89497 5.15994 5.27487 5.29593 5.36731 5.50670 5.54598 5.60847 5.74561 5.85513 5.87907 5.90588 5.98400 6.10180 6.11443 6.13763 6.36591 6.43691 6.48369 6.70572 6.78944 6.83378 6.92220 7.13529 7.53013 7.61840 7.77307 8.08107 8.25818 8.64290 8.88843 9.18879 9.55476 11.01812 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.030644 B = 0.004904 C = 0.004709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.495005 B = 5707.991607 C = 5944.004825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.257 3.743 3 H 0.063 0.937 4 C -0.524 4.524 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.275 1.275 12 N -0.591 5.591 13 C 0.085 3.915 14 C 0.535 3.465 15 O -0.554 6.554 16 C -0.209 4.209 17 C -0.050 4.050 18 C -0.098 4.098 19 C -0.118 4.118 20 C -0.103 4.103 21 H 0.073 0.927 22 C -0.143 4.143 23 C -0.085 4.085 24 H 0.092 0.908 25 H 0.028 0.972 26 H 0.010 0.990 27 H 0.263 0.737 28 H 0.041 0.959 29 H 0.078 0.922 30 H 0.054 0.946 31 H 0.125 0.875 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.056 0.944 37 H 0.051 0.949 38 H 0.056 0.944 39 H 0.083 0.917 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.149 -3.507 15.220 16.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.157 3.843 3 H 0.081 0.919 4 C -0.563 4.563 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.200 1.200 12 N -0.321 5.321 13 C -0.059 4.059 14 C 0.324 3.676 15 O -0.436 6.436 16 C -0.230 4.230 17 C -0.052 4.052 18 C -0.135 4.135 19 C -0.156 4.156 20 C -0.121 4.121 21 H 0.091 0.909 22 C -0.200 4.200 23 C -0.122 4.122 24 H 0.111 0.889 25 H 0.048 0.952 26 H 0.029 0.971 27 H 0.073 0.927 28 H 0.059 0.941 29 H 0.097 0.903 30 H 0.073 0.927 31 H 0.143 0.857 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.101 0.899 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.192 -2.782 14.928 16.399 hybrid contribution 0.139 -0.735 -0.930 1.194 sum 6.331 -3.517 13.998 15.761 Atomic orbital electron populations 1.22074 0.98298 0.99316 1.00694 1.18909 0.90797 0.94562 0.80011 0.91911 1.21341 1.31659 1.12923 0.90362 0.92299 1.24896 0.95008 0.94987 0.98933 1.69891 1.36464 1.22635 1.23663 0.86501 0.79172 0.79295 0.82450 1.20636 1.21115 1.19963 1.48105 1.48941 1.11553 1.23517 1.21602 0.98675 0.83494 1.02132 1.18365 0.79373 0.86540 0.83294 1.90705 1.58767 1.16910 1.77187 1.22260 1.03566 1.00572 0.96561 1.22794 0.92494 0.96177 0.93763 1.21548 0.97311 0.99386 0.95254 1.22586 0.97292 0.94861 1.00851 1.22081 0.96717 0.95333 0.97996 0.90874 1.21785 0.97515 0.99720 1.01007 1.21325 0.99821 0.93340 0.97709 0.88912 0.95242 0.97092 0.92747 0.94083 0.90311 0.92709 0.85722 0.90843 0.89985 0.91147 0.91424 0.92485 0.92995 0.92535 0.89888 0.89456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 8.97 37.15 0.33 -3.26 16 2 C 0.26 6.79 2.64 -69.08 -0.18 6.61 16 3 H 0.06 1.91 6.90 -51.93 -0.36 1.55 16 4 C -0.52 -14.49 7.99 -34.44 -0.28 -14.76 16 5 H 0.06 1.60 7.33 -52.49 -0.38 1.22 16 6 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -25.54 11.32 55.43 0.63 -24.91 16 8 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 11 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 12 N -0.59 -13.23 2.75 -176.66 -0.49 -13.71 16 13 C 0.09 1.50 9.15 59.85 0.55 2.05 16 14 C 0.53 11.69 7.63 -12.67 -0.10 11.59 16 15 O -0.55 -13.90 13.43 5.26 0.07 -13.83 16 16 C -0.21 -3.48 9.13 -37.80 -0.35 -3.82 16 17 C -0.05 -0.74 6.16 -100.19 -0.62 -1.36 16 18 C -0.10 -1.05 6.65 -26.28 -0.17 -1.23 16 19 C -0.12 -1.17 6.38 -24.69 -0.16 -1.33 16 20 C -0.10 -1.16 3.49 -88.90 -0.31 -1.47 16 21 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 22 C -0.14 -1.49 9.12 37.16 0.34 -1.15 16 23 C -0.09 -1.29 4.40 -26.85 -0.12 -1.41 16 24 H 0.09 2.50 6.07 -51.93 -0.32 2.18 16 25 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 26 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 27 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 28 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.08 1.46 7.02 -51.93 -0.36 1.10 16 30 H 0.05 0.80 6.10 -51.93 -0.32 0.48 16 31 H 0.13 1.73 6.22 -52.49 -0.33 1.40 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.70 8.05 -51.93 -0.42 0.28 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.61 8.13 -51.93 -0.42 0.18 16 39 H 0.08 1.40 7.69 -51.93 -0.40 1.00 16 40 H 0.09 1.52 7.35 -51.93 -0.38 1.13 16 LS Contribution 317.32 15.07 4.78 4.78 Total: -1.00 -31.00 317.32 -7.78 -38.78 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -6.60 Total: 0.45 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: -1.15 Total: -7.86 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: 0.14 Total: -38.63 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: 0.07 Total: -13.83 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.00 -7.78 -38.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267855286.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.136 kcal (2) G-P(sol) polarization free energy of solvation -31.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds