Wall clock time and date at job start Sun Mar 29 2020 22:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47093 * 2 1 4 4 N 1.46500 * 109.47114 * 180.02562 * 3 2 1 5 5 C 1.36824 * 119.99897 * 263.66894 * 4 3 2 6 6 H 1.08002 * 119.99937 * 193.28642 * 5 4 3 7 7 C 1.39072 * 119.99797 * 13.29300 * 5 4 3 8 8 N 1.31351 * 120.00383 * 13.75492 * 7 5 4 9 9 Si 1.86797 * 119.99910 * 193.76019 * 7 5 4 10 10 H 1.48503 * 109.47113 * 59.99550 * 9 7 5 11 11 H 1.48496 * 109.47459 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47177 * 299.99919 * 9 7 5 13 13 C 1.34778 * 120.00356 * 83.67164 * 4 3 2 14 14 O 1.21654 * 120.00277 * 185.22943 * 13 4 3 15 15 C 1.46953 * 119.99708 * 5.22745 * 13 4 3 16 16 C 1.50702 * 120.00075 * 258.60317 * 15 13 4 17 17 C 1.33125 * 120.00168 * 78.59645 * 15 13 4 18 18 C 1.51449 * 126.34110 * 179.97438 * 17 15 13 19 19 C 1.54281 * 106.84693 * 180.33984 * 18 17 15 20 20 C 1.54977 * 103.75219 * 23.12652 * 19 18 17 21 21 C 1.51839 * 126.34024 * 359.97438 * 17 15 13 22 22 H 1.09003 * 109.47169 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.46960 * 299.99782 * 1 2 3 24 24 H 1.08994 * 109.47535 * 60.00137 * 1 2 3 25 25 H 1.09002 * 109.46966 * 239.99720 * 2 1 3 26 26 H 1.09001 * 109.47000 * 120.00241 * 2 1 3 27 27 H 1.08998 * 109.47040 * 60.00266 * 3 2 1 28 28 H 1.09001 * 109.47394 * 299.99999 * 3 2 1 29 29 H 0.96994 * 120.00302 * 180.02562 * 8 7 5 30 30 H 1.09002 * 109.46672 * 264.85433 * 16 15 13 31 31 H 1.09003 * 109.47071 * 24.84728 * 16 15 13 32 32 H 1.08996 * 109.47732 * 144.85745 * 16 15 13 33 33 H 1.09002 * 109.98347 * 299.69062 * 18 17 15 34 34 H 1.08998 * 109.98289 * 60.99397 * 18 17 15 35 35 H 1.09004 * 110.56392 * 141.69386 * 19 18 17 36 36 H 1.08999 * 110.56711 * 264.55194 * 19 18 17 37 37 H 1.09002 * 110.83205 * 204.70315 * 20 19 18 38 38 H 1.08996 * 110.83744 * 81.12695 * 20 19 18 39 39 H 1.09004 * 110.44200 * 274.96318 * 21 17 15 40 40 H 1.08993 * 110.44590 * 37.36107 * 21 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1896 1.5729 1.1768 6 1 5.2479 1.7880 1.1652 7 6 3.5226 1.4286 2.3886 8 7 2.3173 0.9074 2.4169 9 14 4.3409 1.9759 3.9761 10 1 4.6416 3.4283 3.9028 11 1 3.4282 1.7168 5.1184 12 1 5.6035 1.2182 4.1690 13 6 4.1785 1.3140 -1.1610 14 8 5.3912 1.2183 -1.1531 15 6 3.4478 1.2894 -2.4357 16 6 3.1950 -0.0218 -3.1342 17 6 3.0090 2.4254 -2.9734 18 6 2.2453 2.5667 -4.2737 19 6 1.9709 4.0722 -4.4697 20 6 3.0704 4.7606 -3.6217 21 6 3.1814 3.8194 -2.3967 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.6767 1.9562 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 1.8519 0.8071 3.2620 30 1 3.9730 -0.1929 -3.8783 31 1 3.2067 -0.8308 -2.4038 32 1 2.2228 0.0099 -3.6259 33 1 2.8447 2.1864 -5.1009 34 1 1.3036 2.0211 -4.2138 35 1 2.0700 4.3459 -5.5202 36 1 0.9803 4.3326 -4.0969 37 1 2.7564 5.7588 -3.3165 38 1 4.0132 4.7995 -4.1671 39 1 2.3903 4.0348 -1.6784 40 1 4.1593 3.9183 -1.9257 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267858741.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:14 Heat of formation + Delta-G solvation = -48.815037 kcal Electronic energy + Delta-G solvation = -19714.734284 eV Core-core repulsion = 16914.596018 eV Total energy + Delta-G solvation = -2800.138266 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.82697 -38.74392 -37.16990 -34.57732 -33.66357 -33.09814 -29.87688 -28.45064 -27.76914 -26.53821 -24.55988 -22.43716 -21.88370 -21.09722 -19.10103 -18.57453 -17.54263 -16.70436 -16.61053 -15.99702 -15.72896 -15.31909 -14.95964 -14.56369 -14.23673 -14.16288 -13.71085 -13.59606 -13.27378 -13.17483 -13.03070 -12.84518 -12.66946 -12.44486 -12.18429 -12.09517 -11.95929 -11.93068 -11.87804 -11.85562 -11.44244 -11.39649 -10.74263 -10.33316 -9.66410 -9.41523 -8.25173 -5.89156 1.01295 1.36674 1.39696 1.49534 2.02092 2.28088 3.09565 3.14337 3.61757 3.85160 4.06448 4.18444 4.25867 4.41730 4.46875 4.52353 4.59054 4.74534 4.77517 4.78950 4.85723 4.90389 4.92340 5.01275 5.07136 5.11837 5.16580 5.19011 5.25711 5.29715 5.38431 5.44587 5.47965 5.57440 5.67573 5.93518 5.98040 6.10874 6.57380 7.18280 7.51314 8.07990 8.66771 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.021598 B = 0.007788 C = 0.007070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.125464 B = 3594.443790 C = 3959.401244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.116 4.116 3 C 0.137 3.863 4 N -0.440 5.440 5 C -0.349 4.349 6 H 0.065 0.935 7 C 0.003 3.997 8 N -0.868 5.868 9 Si 0.985 3.015 10 H -0.273 1.273 11 H -0.265 1.265 12 H -0.281 1.281 13 C 0.469 3.531 14 O -0.654 6.654 15 C -0.155 4.155 16 C -0.088 4.088 17 C -0.104 4.104 18 C -0.084 4.084 19 C -0.113 4.113 20 C -0.115 4.115 21 C -0.101 4.101 22 H 0.056 0.944 23 H 0.047 0.953 24 H 0.059 0.941 25 H 0.034 0.966 26 H 0.060 0.940 27 H 0.086 0.914 28 H 0.050 0.950 29 H 0.273 0.727 30 H 0.073 0.927 31 H 0.044 0.956 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.804 3.719 -10.356 14.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.154 4.154 3 C 0.014 3.986 4 N -0.155 5.155 5 C -0.477 4.477 6 H 0.083 0.917 7 C -0.200 4.200 8 N -0.507 5.507 9 Si 0.809 3.191 10 H -0.199 1.199 11 H -0.189 1.189 12 H -0.207 1.207 13 C 0.260 3.740 14 O -0.545 6.545 15 C -0.158 4.158 16 C -0.145 4.145 17 C -0.105 4.105 18 C -0.121 4.121 19 C -0.150 4.150 20 C -0.152 4.152 21 C -0.138 4.138 22 H 0.075 0.925 23 H 0.066 0.934 24 H 0.078 0.922 25 H 0.052 0.948 26 H 0.079 0.921 27 H 0.104 0.896 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.063 0.937 32 H 0.116 0.884 33 H 0.103 0.897 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -8.428 3.635 -10.150 13.685 hybrid contribution 1.043 -0.012 1.394 1.741 sum -7.385 3.623 -8.756 12.014 Atomic orbital electron populations 1.21484 0.94204 1.01309 1.01258 1.21776 0.96590 0.96793 1.00257 1.21527 0.78569 0.98005 1.00466 1.43931 1.06820 1.59927 1.04819 1.19581 0.94845 1.48972 0.84310 0.91668 1.25918 0.97050 0.95753 1.01256 1.70128 1.13070 1.39907 1.27563 0.85130 0.77976 0.78649 0.77311 1.19863 1.18876 1.20680 1.18841 0.87023 0.82682 0.85487 1.90546 1.16744 1.58833 1.88335 1.20796 1.02270 0.97308 0.95418 1.20589 1.02949 0.91873 0.99100 1.22676 0.97129 0.92800 0.97890 1.21213 0.99559 0.98324 0.92957 1.22362 0.98661 0.93179 1.00848 1.22474 0.99854 0.98192 0.94721 1.21482 0.99963 0.93554 0.98849 0.92453 0.93428 0.92238 0.94783 0.92097 0.89601 0.93219 0.91665 0.90869 0.93730 0.88411 0.89675 0.89009 0.89040 0.90310 0.89944 0.91545 0.91000 0.95260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.08 9.91 71.98 0.71 -3.37 16 2 C -0.12 -4.89 5.65 30.59 0.17 -4.72 16 3 C 0.14 6.31 4.37 86.38 0.38 6.69 16 4 N -0.44 -23.90 2.63 -639.81 -1.68 -25.58 16 5 C -0.35 -20.65 9.43 84.11 0.79 -19.85 16 6 H 0.07 4.20 7.31 -2.91 -0.02 4.18 16 7 C 0.00 0.15 5.13 84.96 0.44 0.58 16 8 N -0.87 -44.32 8.10 21.68 0.18 -44.15 16 9 Si 0.99 43.10 29.58 68.60 2.03 45.13 16 10 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 11 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 12 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 13 C 0.47 25.36 6.08 86.53 0.53 25.88 16 14 O -0.65 -41.58 16.75 -4.20 -0.07 -41.65 16 15 C -0.15 -6.36 4.19 -18.73 -0.08 -6.44 16 16 C -0.09 -2.93 9.09 71.24 0.65 -2.28 16 17 C -0.10 -3.55 5.13 -17.00 -0.09 -3.64 16 18 C -0.08 -1.92 5.61 30.52 0.17 -1.75 16 19 C -0.11 -2.15 6.87 31.70 0.22 -1.94 16 20 C -0.12 -2.79 6.95 31.91 0.22 -2.57 16 21 C -0.10 -3.50 5.97 30.85 0.18 -3.31 16 22 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 23 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 24 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.03 1.39 6.11 -2.39 -0.01 1.38 16 26 H 0.06 3.01 6.30 -2.39 -0.02 3.00 16 27 H 0.09 4.28 5.80 -2.39 -0.01 4.26 16 28 H 0.05 2.07 5.93 -2.39 -0.01 2.05 16 29 H 0.27 13.05 8.31 -92.71 -0.77 12.28 16 30 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.04 1.62 6.96 -2.39 -0.02 1.60 16 32 H 0.10 2.47 7.36 -2.39 -0.02 2.45 16 33 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.09 1.81 7.93 -2.39 -0.02 1.79 16 35 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 36 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.07 2.51 7.92 -2.38 -0.02 2.49 16 40 H 0.03 1.23 7.80 -2.39 -0.02 1.21 16 Total: -1.00 -70.22 313.76 5.75 -64.46 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: 1.01 Total: 18.49 kcal Atomic # 6 Polarization: -21.01 SS G_CDS: 4.30 Total: -16.71 kcal Atomic # 7 Polarization: -68.22 SS G_CDS: -1.51 Total: -69.73 kcal Atomic # 8 Polarization: -41.58 SS G_CDS: -0.07 Total: -41.65 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -70.22 5.75 -64.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267858741.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.649 kcal (2) G-P(sol) polarization free energy of solvation -70.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds