Wall clock time and date at job start Sun Mar 29 2020 22:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46886 * 2 1 4 4 N 1.46493 * 109.46981 * 180.02562 * 3 2 1 5 5 C 1.36818 * 120.00020 * 264.51578 * 4 3 2 6 6 H 1.08002 * 120.00149 * 189.49103 * 5 4 3 7 7 C 1.39070 * 120.00044 * 9.49987 * 5 4 3 8 8 N 1.31356 * 119.99923 * 19.80279 * 7 5 4 9 9 Si 1.86805 * 120.00133 * 199.80013 * 7 5 4 10 10 H 1.48497 * 109.46599 * 59.99939 * 9 7 5 11 11 H 1.48501 * 109.46977 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47079 * 300.00263 * 9 7 5 13 13 C 1.34777 * 120.00190 * 84.52551 * 4 3 2 14 14 O 1.21663 * 119.99756 * 5.59614 * 13 4 3 15 15 C 1.46958 * 120.00222 * 185.59729 * 13 4 3 16 16 C 1.31691 * 119.85273 * 278.40768 * 15 13 4 17 17 C 1.51413 * 120.28368 * 180.02562 * 16 15 13 18 18 C 1.53039 * 108.57103 * 71.56922 * 17 16 15 19 19 C 1.51778 * 110.80808 * 274.28717 * 18 17 16 20 20 C 1.51772 * 113.85679 * 66.96932 * 19 18 17 21 21 C 1.51405 * 119.85534 * 98.40683 * 15 13 4 22 22 H 1.08995 * 109.47352 * 299.99422 * 1 2 3 23 23 H 1.09004 * 109.47399 * 60.00023 * 1 2 3 24 24 H 1.09007 * 109.46900 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46968 * 240.00668 * 2 1 3 26 26 H 1.08990 * 109.47279 * 119.99952 * 2 1 3 27 27 H 1.08998 * 109.47051 * 59.99839 * 3 2 1 28 28 H 1.09004 * 109.47083 * 300.00170 * 3 2 1 29 29 H 0.97000 * 119.99584 * 180.02562 * 8 7 5 30 30 H 1.07992 * 119.85821 * 0.27576 * 16 15 13 31 31 H 1.08994 * 109.61844 * 191.29272 * 17 16 15 32 32 H 1.09000 * 109.61973 * 311.65970 * 17 16 15 33 33 H 1.09002 * 109.20824 * 34.62888 * 18 17 16 34 34 H 1.09000 * 109.21081 * 153.99180 * 18 17 16 35 35 H 1.09001 * 108.60348 * 188.10134 * 19 18 17 36 36 H 1.08997 * 108.60992 * 305.97796 * 19 18 17 37 37 H 1.09004 * 109.21269 * 53.37119 * 20 19 18 38 38 H 1.09005 * 109.20956 * 172.73038 * 20 19 18 39 39 H 1.09012 * 109.62284 * 348.70638 * 21 15 13 40 40 H 1.09003 * 109.62458 * 228.15754 * 21 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1895 1.5557 1.1786 6 1 5.2584 1.7098 1.1698 7 6 3.5089 1.4719 2.3885 8 7 2.3219 0.9116 2.4369 9 14 4.2830 2.1562 3.9448 10 1 4.5347 3.6097 3.7746 11 1 3.3618 1.9446 5.0902 12 1 5.5675 1.4588 4.2067 13 6 4.1783 1.3314 -1.1628 14 8 3.5739 1.3336 -2.2186 15 6 5.6426 1.2076 -1.1546 16 6 6.3909 2.2848 -1.0364 17 6 7.9006 2.1685 -1.0274 18 6 8.3705 1.8133 -2.4399 19 6 8.3276 0.3123 -2.6609 20 6 6.9250 -0.2673 -2.6681 21 6 6.2843 -0.1578 -1.2820 22 1 -0.3634 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5137 -0.8901 26 1 1.8933 -0.5138 0.8899 27 1 1.6766 1.9564 0.8900 28 1 1.6766 1.9564 -0.8900 29 1 1.8471 0.8535 3.2808 30 1 5.9258 3.2548 -0.9415 31 1 8.3390 3.1192 -0.7241 32 1 8.2033 1.3869 -0.3306 33 1 7.7217 2.3016 -3.1671 34 1 9.3926 2.1663 -2.5773 35 1 8.8016 0.0878 -3.6164 36 1 8.8980 -0.1723 -1.8685 37 1 6.3154 0.2775 -3.3891 38 1 6.9720 -1.3168 -2.9588 39 1 5.5247 -0.9314 -1.1679 40 1 7.0490 -0.2761 -0.5144 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274797007.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:08 Heat of formation + Delta-G solvation = -33.822700 kcal Electronic energy + Delta-G solvation = -19515.815125 eV Core-core repulsion = 16716.326975 eV Total energy + Delta-G solvation = -2799.488150 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.09545 -37.40707 -35.05743 -32.57343 -31.89824 -31.48293 -31.07407 -26.09406 -25.22233 -24.27880 -23.44295 -20.78351 -20.13286 -19.47251 -18.14181 -16.67832 -15.91546 -14.92639 -14.89784 -14.34883 -14.06474 -13.59627 -13.38051 -13.25971 -12.97084 -12.70714 -12.61052 -12.15678 -11.75270 -11.43886 -11.31825 -11.04135 -10.92611 -10.78893 -10.65983 -10.41495 -10.41114 -10.32392 -10.24662 -10.22480 -10.10002 -9.51753 -8.81500 -8.42353 -8.05969 -7.73114 -6.32846 -3.82815 2.76704 3.11550 3.20673 3.22957 3.87376 4.10112 4.84871 4.99819 5.09475 5.15596 5.20261 5.56952 5.64977 5.73653 5.81015 5.94371 5.98417 6.11454 6.15767 6.18850 6.21560 6.33441 6.38360 6.38910 6.48691 6.53804 6.59368 6.69949 6.78507 6.93079 7.04468 7.09957 7.21917 7.38507 7.50245 7.53202 7.75733 7.84849 8.49116 9.09413 9.56833 9.97250 10.63441 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.019424 B = 0.008364 C = 0.006413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.166269 B = 3347.024843 C = 4365.197887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.117 4.117 3 C 0.136 3.864 4 N -0.431 5.431 5 C -0.328 4.328 6 H 0.101 0.899 7 C 0.034 3.966 8 N -0.859 5.859 9 Si 0.917 3.083 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.274 1.274 13 C 0.482 3.518 14 O -0.610 6.610 15 C -0.098 4.098 16 C -0.152 4.152 17 C -0.083 4.083 18 C -0.113 4.113 19 C -0.115 4.115 20 C -0.114 4.114 21 C -0.067 4.067 22 H 0.052 0.948 23 H 0.036 0.964 24 H 0.038 0.962 25 H 0.030 0.970 26 H 0.094 0.906 27 H 0.101 0.899 28 H 0.034 0.966 29 H 0.267 0.733 30 H 0.106 0.894 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.053 0.947 36 H 0.056 0.944 37 H 0.067 0.933 38 H 0.059 0.941 39 H 0.066 0.934 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.352 -0.514 -2.634 7.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.155 4.155 3 C 0.013 3.987 4 N -0.146 5.146 5 C -0.456 4.456 6 H 0.119 0.881 7 C -0.171 4.171 8 N -0.498 5.498 9 Si 0.744 3.256 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.199 1.199 13 C 0.271 3.729 14 O -0.498 6.498 15 C -0.101 4.101 16 C -0.171 4.171 17 C -0.121 4.121 18 C -0.151 4.151 19 C -0.152 4.152 20 C -0.151 4.151 21 C -0.104 4.104 22 H 0.071 0.929 23 H 0.055 0.945 24 H 0.057 0.943 25 H 0.048 0.952 26 H 0.112 0.888 27 H 0.119 0.881 28 H 0.053 0.947 29 H 0.078 0.922 30 H 0.124 0.876 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.872 -0.554 -2.956 7.502 hybrid contribution 0.239 0.318 1.001 1.078 sum 7.111 -0.236 -1.955 7.379 Atomic orbital electron populations 1.21576 0.97559 0.99725 1.00415 1.21742 0.93784 0.98424 1.01542 1.21360 0.79892 0.96952 1.00462 1.43770 1.05624 1.60038 1.05207 1.19709 0.94174 1.49007 0.82683 0.88095 1.25209 0.96314 0.96399 0.99129 1.70097 1.14014 1.38916 1.26724 0.86145 0.78878 0.79762 0.80816 1.20003 1.20956 1.19924 1.18174 0.87222 0.83381 0.84133 1.90635 1.69848 1.58127 1.31235 1.21058 0.93918 0.95658 0.99460 1.22719 0.94455 0.97880 1.02056 1.20744 0.93225 1.01388 0.96714 1.21271 1.00373 0.96130 0.97301 1.21117 0.97186 0.95835 1.01070 1.21280 0.95865 1.00331 0.97632 1.20577 0.99017 0.94162 0.96683 0.92896 0.94473 0.94335 0.95159 0.88790 0.88139 0.94748 0.92186 0.87582 0.91849 0.91199 0.91818 0.92419 0.92833 0.92560 0.91383 0.92236 0.91535 0.90974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.63 9.91 37.16 0.37 -2.26 16 2 C -0.12 -2.72 5.69 -26.73 -0.15 -2.87 16 3 C 0.14 3.41 4.58 -4.04 -0.02 3.39 16 4 N -0.43 -11.11 2.63 -116.21 -0.31 -11.42 16 5 C -0.33 -8.30 9.22 -15.02 -0.14 -8.44 16 6 H 0.10 2.47 6.15 -52.49 -0.32 2.15 16 7 C 0.03 0.82 5.03 -17.45 -0.09 0.74 16 8 N -0.86 -21.40 8.30 55.50 0.46 -20.94 16 9 Si 0.92 19.32 29.60 -169.99 -5.03 14.29 16 10 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 11 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 12 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 13 C 0.48 12.24 6.88 -12.73 -0.09 12.15 16 14 O -0.61 -17.13 16.75 5.22 0.09 -17.04 16 15 C -0.10 -2.06 3.43 -102.62 -0.35 -2.41 16 16 C -0.15 -2.84 8.14 -35.83 -0.29 -3.13 16 17 C -0.08 -1.21 5.61 -27.51 -0.15 -1.37 16 18 C -0.11 -1.48 5.66 -27.33 -0.15 -1.63 16 19 C -0.11 -1.46 5.27 -27.97 -0.15 -1.61 16 20 C -0.11 -1.74 5.66 -27.31 -0.15 -1.89 16 21 C -0.07 -1.20 5.48 -27.49 -0.15 -1.35 16 22 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 23 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.09 2.37 6.34 -51.93 -0.33 2.04 16 27 H 0.10 2.58 5.78 -51.93 -0.30 2.28 16 28 H 0.03 0.87 7.52 -51.93 -0.39 0.48 16 29 H 0.27 6.37 8.31 -40.82 -0.34 6.03 16 30 H 0.11 2.07 8.04 -52.49 -0.42 1.65 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 1.00 6.76 -51.93 -0.35 0.65 16 33 H 0.06 0.90 7.85 -51.93 -0.41 0.50 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.67 7.87 -51.93 -0.41 0.26 16 37 H 0.07 1.18 7.85 -51.93 -0.41 0.77 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.07 1.29 8.02 -51.92 -0.42 0.87 16 40 H 0.07 1.19 6.75 -51.93 -0.35 0.84 16 LS Contribution 311.53 15.07 4.69 4.69 Total: -1.00 -28.07 311.53 -8.24 -36.31 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -6.62 Total: 4.81 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: -1.52 Total: -10.71 kcal Atomic # 7 Polarization: -32.51 SS G_CDS: 0.15 Total: -32.36 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: 0.09 Total: -17.04 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.03 Total: 14.29 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.07 -8.24 -36.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274797007.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.485 kcal (2) G-P(sol) polarization free energy of solvation -28.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds