Wall clock time and date at job start Sun Mar 29 2020 23:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.47183 * 2 1 4 4 C 1.50700 * 109.47158 * 120.00486 * 2 1 3 5 5 H 1.07995 * 120.00103 * 120.00227 * 4 2 1 6 6 C 1.37882 * 119.99717 * 299.99926 * 4 2 1 7 7 N 1.31511 * 119.99839 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 119.99779 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47216 * 90.00081 * 8 6 4 10 10 H 1.48499 * 109.47391 * 210.00294 * 8 6 4 11 11 H 1.48496 * 109.47366 * 330.00342 * 8 6 4 12 12 N 1.46504 * 109.47372 * 240.00557 * 2 1 3 13 13 C 1.46504 * 119.99894 * 299.99880 * 12 2 1 14 14 C 1.34774 * 120.00528 * 119.99882 * 12 2 1 15 15 O 1.21284 * 119.99618 * 0.02562 * 14 12 2 16 16 C 1.50697 * 120.00218 * 179.97438 * 14 12 2 17 17 H 1.09004 * 109.64083 * 28.41586 * 16 14 12 18 18 C 1.53013 * 109.81961 * 267.87998 * 16 14 12 19 19 C 1.50063 * 110.14972 * 190.77604 * 18 16 14 20 20 C 1.29443 * 124.07744 * 17.13469 * 19 18 16 21 21 C 1.50072 * 124.07112 * 359.52923 * 20 19 18 22 22 C 1.53022 * 110.14733 * 17.12996 * 21 20 19 23 23 H 1.09003 * 109.63887 * 70.24799 * 22 21 20 24 24 C 1.52998 * 109.64097 * 190.87505 * 22 21 20 25 25 H 1.09006 * 109.47282 * 60.00017 * 1 2 3 26 26 H 1.08999 * 109.47118 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47218 * 299.99991 * 1 2 3 28 28 H 0.96998 * 119.99571 * 179.97438 * 7 6 4 29 29 H 1.08992 * 109.47189 * 270.00388 * 13 12 2 30 30 H 1.09009 * 109.46776 * 30.00329 * 13 12 2 31 31 H 1.08999 * 109.47255 * 149.99712 * 13 12 2 32 32 H 1.08999 * 109.36194 * 310.98580 * 18 16 14 33 33 H 1.09002 * 109.35544 * 70.56954 * 18 16 14 34 34 H 1.08004 * 117.96918 * 197.11149 * 19 18 16 35 35 H 1.08001 * 117.96893 * 179.50817 * 20 19 18 36 36 H 1.09001 * 109.35924 * 256.92321 * 21 20 19 37 37 H 1.09000 * 109.35592 * 137.34083 * 21 20 19 38 38 H 1.09005 * 109.47089 * 184.78593 * 24 22 21 39 39 H 1.08995 * 109.47660 * 304.79246 * 24 22 21 40 40 H 1.09007 * 109.46686 * 64.79632 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9427 0.8295 2.6034 8 14 2.3213 -1.1206 4.0078 9 1 3.6296 -0.5462 4.4123 10 1 1.3430 -0.9496 5.1119 11 1 2.4858 -2.5664 3.7118 12 7 2.0184 -0.6905 -1.1962 13 6 1.6645 -2.0931 -1.4282 14 6 2.7932 -0.0355 -2.0834 15 8 3.0866 1.1255 -1.8911 16 6 3.2961 -0.7460 -3.3136 17 1 2.5940 -1.5304 -3.5963 18 6 4.6688 -1.3610 -3.0328 19 6 5.2920 -1.8397 -4.3113 20 6 4.9051 -1.4695 -5.4898 21 6 3.7727 -0.5177 -5.7426 22 6 3.4400 0.2567 -4.4654 23 1 4.2441 0.9580 -4.2423 24 6 2.1257 1.0172 -4.6528 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 0.7081 1.1606 3.4844 29 1 2.4157 -2.7376 -0.9719 30 1 0.6904 -2.3001 -0.9849 31 1 1.6239 -2.2851 -2.5004 32 1 5.3139 -0.6111 -2.5750 33 1 4.5547 -2.2024 -2.3493 34 1 6.1147 -2.5361 -4.2440 35 1 5.4301 -1.8703 -6.3443 36 1 2.8948 -1.0780 -6.0644 37 1 4.0585 0.1837 -6.5264 38 1 1.9346 1.6342 -3.7747 39 1 2.1964 1.6530 -5.5352 40 1 1.3097 0.3061 -4.7816 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000284302210.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:09:39 Heat of formation + Delta-G solvation = -33.974105 kcal Electronic energy + Delta-G solvation = -19448.124803 eV Core-core repulsion = 16648.630088 eV Total energy + Delta-G solvation = -2799.494715 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.94971 -37.53007 -35.24819 -32.87612 -32.52991 -31.02590 -29.11020 -26.48652 -26.05427 -25.19663 -23.86300 -21.66483 -20.33839 -18.19582 -17.97168 -16.62149 -16.12529 -15.70688 -15.01704 -14.65593 -14.37572 -13.83672 -13.45657 -13.34728 -12.82496 -12.58298 -12.50853 -12.21788 -11.98043 -11.86579 -11.76222 -11.51464 -11.23823 -11.03575 -10.81614 -10.68479 -10.46661 -10.31039 -10.20754 -10.19595 -10.10668 -9.13778 -8.95233 -8.72096 -8.39100 -7.52282 -6.05052 -4.12801 2.31455 3.28101 3.34385 3.35826 3.45872 4.00448 4.41520 4.73386 4.83118 4.95624 5.24604 5.29403 5.33913 5.39535 5.45743 5.60277 5.67097 5.78154 5.87202 5.89381 5.99937 6.08587 6.10483 6.18011 6.23777 6.34807 6.51559 6.58874 6.71808 6.79110 6.85363 6.97095 7.09232 7.48736 7.56466 7.74870 8.04860 8.23200 8.59769 8.87049 9.14141 9.53909 11.00210 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.032208 B = 0.005989 C = 0.005509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.137011 B = 4674.444204 C = 5081.058665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.257 3.743 3 H 0.063 0.937 4 C -0.523 4.523 5 H 0.058 0.942 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.593 5.593 13 C 0.085 3.915 14 C 0.511 3.489 15 O -0.552 6.552 16 C -0.106 4.106 17 H 0.089 0.911 18 C -0.079 4.079 19 C -0.147 4.147 20 C -0.161 4.161 21 C -0.085 4.085 22 C -0.071 4.071 23 H 0.080 0.920 24 C -0.152 4.152 25 H 0.011 0.989 26 H 0.029 0.971 27 H 0.093 0.907 28 H 0.263 0.737 29 H 0.047 0.953 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.051 0.949 40 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.391 -6.091 -14.083 15.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.157 3.843 3 H 0.081 0.919 4 C -0.562 4.562 5 H 0.076 0.924 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.200 1.200 12 N -0.323 5.323 13 C -0.059 4.059 14 C 0.298 3.702 15 O -0.431 6.431 16 C -0.127 4.127 17 H 0.107 0.893 18 C -0.117 4.117 19 C -0.165 4.165 20 C -0.179 4.179 21 C -0.122 4.122 22 C -0.090 4.090 23 H 0.098 0.902 24 C -0.209 4.209 25 H 0.030 0.970 26 H 0.048 0.952 27 H 0.111 0.889 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.121 0.879 35 H 0.118 0.882 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.070 0.930 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.430 -5.370 -13.803 15.202 hybrid contribution 0.338 -0.732 0.921 1.224 sum 3.768 -6.102 -12.881 14.743 Atomic orbital electron populations 1.22088 0.98349 0.99287 1.00785 1.18918 0.90788 0.94528 0.80099 0.91945 1.21326 1.31663 1.12903 0.90334 0.92353 1.24895 0.94984 0.95007 0.98948 1.69881 1.36402 1.22709 1.23680 0.86504 0.78640 0.79862 0.82429 1.20643 1.21143 1.19957 1.48252 1.48977 1.11523 1.23568 1.21603 1.01494 0.83436 0.99355 1.20264 0.78902 0.87011 0.83996 1.90622 1.58442 1.17180 1.76895 1.21513 0.97955 0.98684 0.94581 0.89333 1.20324 0.94709 1.00701 0.95936 1.22044 1.00073 1.00112 0.94264 1.22042 0.99042 0.99677 0.97175 1.20541 0.96881 0.97044 0.97760 1.20977 0.99073 0.96158 0.92791 0.90201 1.21894 0.96235 1.00269 1.02476 0.97027 0.95162 0.88859 0.92736 0.93393 0.91001 0.92775 0.90109 0.90534 0.87908 0.88191 0.91004 0.91096 0.90966 0.92959 0.93248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.54 8.95 37.16 0.33 -3.21 16 2 C 0.26 6.62 2.64 -69.08 -0.18 6.44 16 3 H 0.06 1.87 6.90 -51.93 -0.36 1.51 16 4 C -0.52 -14.27 8.37 -34.44 -0.29 -14.56 16 5 H 0.06 1.57 7.65 -52.49 -0.40 1.17 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -25.33 11.32 55.43 0.63 -24.70 16 8 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 12 N -0.59 -12.72 2.75 -175.26 -0.48 -13.20 16 13 C 0.09 1.45 9.51 59.85 0.57 2.02 16 14 C 0.51 10.57 5.84 -10.99 -0.06 10.51 16 15 O -0.55 -13.56 14.42 5.55 0.08 -13.48 16 16 C -0.11 -1.65 1.65 -91.56 -0.15 -1.80 16 17 H 0.09 1.24 5.78 -51.93 -0.30 0.94 16 18 C -0.08 -1.13 5.43 -28.18 -0.15 -1.28 16 19 C -0.15 -1.73 9.80 -35.90 -0.35 -2.08 16 20 C -0.16 -1.77 9.80 -35.90 -0.35 -2.12 16 21 C -0.09 -0.95 5.43 -28.17 -0.15 -1.10 16 22 C -0.07 -1.01 2.00 -90.41 -0.18 -1.19 16 23 H 0.08 1.27 8.08 -51.93 -0.42 0.85 16 24 C -0.15 -2.18 8.68 37.16 0.32 -1.86 16 25 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.03 0.67 6.66 -51.93 -0.35 0.32 16 27 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 28 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 1.24 6.43 -51.92 -0.33 0.90 16 31 H 0.05 0.75 5.76 -51.93 -0.30 0.45 16 32 H 0.08 1.28 8.10 -51.93 -0.42 0.86 16 33 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.10 1.04 8.06 -52.48 -0.42 0.62 16 35 H 0.10 0.91 8.06 -52.49 -0.42 0.49 16 36 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 1.28 6.39 -51.93 -0.33 0.95 16 39 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 LS Contribution 311.94 15.07 4.70 4.70 Total: -1.00 -30.36 311.94 -7.31 -37.66 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -6.46 Total: 1.42 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: -0.75 Total: -8.56 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 0.14 Total: -37.90 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: 0.08 Total: -13.48 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.36 -7.31 -37.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000284302210.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.688 kcal (2) G-P(sol) polarization free energy of solvation -30.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds