Wall clock time and date at job start Sun Mar 29 2020 22:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46832 * 2 1 4 4 N 1.46493 * 109.47179 * 180.02562 * 3 2 1 5 5 C 1.36819 * 119.99993 * 263.05644 * 4 3 2 6 6 H 1.07996 * 120.00539 * 141.77766 * 5 4 3 7 7 C 1.39074 * 119.99551 * 321.77712 * 5 4 3 8 8 N 1.31347 * 120.00533 * 347.91001 * 7 5 4 9 9 Si 1.86801 * 119.99670 * 167.91301 * 7 5 4 10 10 H 1.48506 * 109.47225 * 59.99976 * 9 7 5 11 11 H 1.48500 * 109.47092 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47474 * 299.99856 * 9 7 5 13 13 C 1.34780 * 120.00246 * 83.05554 * 4 3 2 14 14 O 1.21660 * 119.99989 * 180.27930 * 13 4 3 15 15 C 1.46951 * 120.00037 * 359.97438 * 13 4 3 16 16 C 1.33120 * 120.00147 * 184.70407 * 15 13 4 17 17 C 1.51268 * 120.84911 * 14.96604 * 16 15 13 18 18 C 1.53667 * 108.30913 * 128.62413 * 17 16 15 19 19 C 1.52955 * 109.32656 * 54.85844 * 18 17 16 20 20 C 1.52961 * 109.81825 * 296.27385 * 19 18 17 21 21 C 1.51269 * 120.84691 * 195.25195 * 16 15 13 22 22 H 1.09003 * 109.46808 * 299.99539 * 1 2 3 23 23 H 1.09000 * 109.47358 * 60.00028 * 1 2 3 24 24 H 1.09006 * 109.46729 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47091 * 240.00047 * 2 1 3 26 26 H 1.08998 * 109.47884 * 119.99422 * 2 1 3 27 27 H 1.08999 * 109.47244 * 60.00141 * 3 2 1 28 28 H 1.09008 * 109.46611 * 299.99828 * 3 2 1 29 29 H 0.97000 * 120.00208 * 180.02562 * 8 7 5 30 30 H 1.08007 * 119.99852 * 4.69621 * 15 13 4 31 31 H 1.09005 * 109.62682 * 248.39198 * 17 16 15 32 32 H 1.08994 * 109.62984 * 8.96355 * 17 16 15 33 33 H 1.08996 * 109.62465 * 294.83890 * 18 17 16 34 34 H 1.08997 * 109.42612 * 174.75947 * 18 17 16 35 35 H 1.08996 * 109.41620 * 176.16459 * 19 18 17 36 36 H 1.08996 * 109.41204 * 56.37899 * 19 18 17 37 37 H 1.09000 * 109.48316 * 303.62172 * 20 19 18 38 38 H 1.08999 * 109.48226 * 183.57359 * 20 19 18 39 39 H 1.08996 * 109.62883 * 351.03322 * 21 16 15 40 40 H 1.09002 * 109.62727 * 111.61083 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4427 -0.0006 5 6 4.1894 1.5858 1.1753 6 1 5.0959 1.0236 1.3444 7 6 3.7180 2.4554 2.1529 8 7 2.7627 3.3101 1.8664 9 14 4.4434 2.4079 3.8736 10 1 5.8981 2.6990 3.8058 11 1 3.7742 3.4271 4.7213 12 1 4.2352 1.0603 4.4616 13 6 4.1783 1.3018 -1.1596 14 8 5.3949 1.2968 -1.1594 15 6 3.4431 1.1475 -2.4225 16 6 4.1050 0.9147 -3.5539 17 6 5.5519 0.4744 -3.5295 18 6 5.6886 -0.7832 -4.4020 19 6 5.1429 -0.4907 -5.8006 20 6 3.6464 -0.1846 -5.7198 21 6 3.4311 1.0900 -4.8968 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5137 0.8900 27 1 1.6766 1.9564 0.8900 28 1 1.6765 1.9564 -0.8901 29 1 2.4341 3.9168 2.5481 30 1 2.3657 1.2228 -2.4329 31 1 6.1833 1.2693 -3.9265 32 1 5.8477 0.2451 -2.5058 33 1 5.1242 -1.6017 -3.9553 34 1 6.7397 -1.0627 -4.4729 35 1 5.3010 -1.3590 -6.4401 36 1 5.6661 0.3679 -6.2213 37 1 3.1302 -1.0173 -5.2420 38 1 3.2502 -0.0395 -6.7248 39 1 2.3637 1.2563 -4.7519 40 1 3.8697 1.9408 -5.4182 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299156315.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:20 Heat of formation + Delta-G solvation = -36.463103 kcal Electronic energy + Delta-G solvation = -19141.253832 eV Core-core repulsion = 16341.651186 eV Total energy + Delta-G solvation = -2799.602646 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.99253 -37.49802 -35.21770 -32.88311 -31.90739 -31.15630 -30.57536 -26.86525 -25.64726 -24.17151 -22.56984 -21.28473 -20.77613 -19.47885 -17.38263 -16.85129 -16.07501 -14.91680 -14.88679 -14.28315 -14.00447 -13.82731 -13.69992 -13.54516 -12.96716 -12.88556 -12.34443 -12.20509 -11.92921 -11.61147 -11.47350 -11.30093 -11.25387 -10.93661 -10.84566 -10.62950 -10.60257 -10.34714 -10.26089 -10.15019 -9.95285 -9.77228 -8.90341 -8.32627 -7.94327 -7.36290 -6.26831 -3.95883 2.19614 3.23214 3.25975 3.29763 4.16314 4.47442 4.84997 4.98503 5.06504 5.13776 5.18657 5.45566 5.51622 5.66561 5.67758 5.72758 5.77325 5.83464 5.90610 5.96070 6.10443 6.12897 6.20025 6.27491 6.32668 6.34503 6.37701 6.46438 6.55987 6.65590 6.67763 6.87570 6.99520 7.19360 7.38524 7.41150 7.62999 8.33244 8.59889 9.24380 9.46624 10.11008 10.74159 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.025644 B = 0.006260 C = 0.005433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.602020 B = 4471.566466 C = 5152.356510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.140 4.140 3 C 0.100 3.900 4 N -0.433 5.433 5 C -0.299 4.299 6 H 0.090 0.910 7 C 0.034 3.966 8 N -0.876 5.876 9 Si 0.923 3.077 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.273 1.273 13 C 0.485 3.515 14 O -0.581 6.581 15 C -0.194 4.194 16 C -0.071 4.071 17 C -0.110 4.110 18 C -0.116 4.116 19 C -0.120 4.120 20 C -0.115 4.115 21 C -0.085 4.085 22 H 0.053 0.947 23 H 0.048 0.952 24 H 0.045 0.955 25 H 0.050 0.950 26 H 0.062 0.938 27 H 0.119 0.881 28 H 0.046 0.954 29 H 0.269 0.731 30 H 0.114 0.886 31 H 0.062 0.938 32 H 0.124 0.876 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.066 0.934 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.277 -5.765 -9.799 11.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.179 4.179 3 C -0.024 4.024 4 N -0.149 5.149 5 C -0.428 4.428 6 H 0.107 0.893 7 C -0.170 4.170 8 N -0.514 5.514 9 Si 0.750 3.250 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.199 1.199 13 C 0.277 3.723 14 O -0.468 6.468 15 C -0.215 4.215 16 C -0.074 4.074 17 C -0.146 4.146 18 C -0.153 4.153 19 C -0.158 4.158 20 C -0.152 4.152 21 C -0.123 4.123 22 H 0.072 0.928 23 H 0.067 0.933 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.080 0.920 27 H 0.137 0.863 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.132 0.868 31 H 0.081 0.919 32 H 0.141 0.859 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.809 -5.599 -9.634 11.492 hybrid contribution -0.023 0.146 0.759 0.774 sum -2.833 -5.453 -8.875 10.795 Atomic orbital electron populations 1.21670 0.96469 1.00531 1.01500 1.22004 0.94805 0.99478 1.01578 1.21762 0.82068 0.94237 1.04350 1.43394 1.04730 1.61664 1.05116 1.19431 1.09276 1.22578 0.91499 0.89264 1.25461 0.96928 0.94019 1.00573 1.69731 1.28107 1.19202 1.34383 0.86051 0.79418 0.77951 0.81598 1.19725 1.20938 1.19891 1.18492 0.87426 0.82724 0.83660 1.90434 1.13893 1.56273 1.86162 1.22707 0.99330 1.05633 0.93874 1.22376 0.96524 0.95198 0.93317 1.21500 0.92795 0.95926 1.04387 1.21674 1.00227 0.98549 0.94880 1.21537 0.95879 1.00871 0.97493 1.21554 0.96612 0.97848 0.99226 1.20840 0.99913 0.97815 0.93693 0.92753 0.93250 0.93573 0.93170 0.91968 0.86340 0.93551 0.92114 0.86798 0.91919 0.85879 0.92375 0.92268 0.92652 0.92191 0.91998 0.92315 0.91508 0.90756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.91 37.16 0.37 -1.81 16 2 C -0.14 -2.63 6.09 -26.73 -0.16 -2.79 16 3 C 0.10 2.24 4.54 -4.04 -0.02 2.22 16 4 N -0.43 -11.23 2.54 -116.20 -0.30 -11.53 16 5 C -0.30 -8.38 8.94 -15.02 -0.13 -8.51 16 6 H 0.09 2.59 7.72 -52.49 -0.41 2.18 16 7 C 0.03 0.89 5.12 -17.45 -0.09 0.80 16 8 N -0.88 -23.66 11.04 55.50 0.61 -23.05 16 9 Si 0.92 20.81 29.57 -169.99 -5.03 15.78 16 10 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 12 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 13 C 0.49 12.28 7.38 -12.73 -0.09 12.19 16 14 O -0.58 -16.16 13.13 5.22 0.07 -16.09 16 15 C -0.19 -3.97 8.21 -37.84 -0.31 -4.28 16 16 C -0.07 -1.28 5.37 -100.57 -0.54 -1.82 16 17 C -0.11 -1.98 5.27 -27.26 -0.14 -2.12 16 18 C -0.12 -1.66 5.95 -26.41 -0.16 -1.81 16 19 C -0.12 -1.45 5.81 -26.77 -0.16 -1.60 16 20 C -0.11 -1.36 5.94 -26.63 -0.16 -1.52 16 21 C -0.09 -1.18 6.04 -27.48 -0.17 -1.35 16 22 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.92 7.45 -51.93 -0.39 0.53 16 26 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.12 2.91 5.30 -51.93 -0.28 2.64 16 28 H 0.05 0.98 6.45 -51.92 -0.33 0.64 16 29 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 30 H 0.11 2.11 6.13 -52.48 -0.32 1.79 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.12 2.70 4.92 -52.34 -0.26 2.44 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.86 7.93 -51.93 -0.41 0.45 16 40 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 314.07 15.07 4.73 4.73 Total: -1.00 -29.76 314.07 -8.27 -38.03 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -6.60 Total: 4.53 kcal Atomic # 6 Polarization: -10.65 SS G_CDS: -1.76 Total: -12.41 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: 0.32 Total: -34.57 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: 0.07 Total: -16.09 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.03 Total: 15.78 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.76 -8.27 -38.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299156315.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.564 kcal (2) G-P(sol) polarization free energy of solvation -29.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds