Wall clock time and date at job start Sun Mar 29 2020 22:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46832 * 2 1 4 4 N 1.46493 * 109.47179 * 180.02562 * 3 2 1 5 5 C 1.36819 * 119.99993 * 263.05644 * 4 3 2 6 6 H 1.07996 * 120.00539 * 141.77766 * 5 4 3 7 7 C 1.39074 * 119.99551 * 321.77712 * 5 4 3 8 8 N 1.31347 * 120.00533 * 347.91001 * 7 5 4 9 9 Si 1.86801 * 119.99670 * 167.91301 * 7 5 4 10 10 H 1.48506 * 109.47225 * 59.99976 * 9 7 5 11 11 H 1.48500 * 109.47092 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47474 * 299.99856 * 9 7 5 13 13 C 1.34780 * 120.00246 * 83.05554 * 4 3 2 14 14 O 1.21660 * 119.99989 * 180.27930 * 13 4 3 15 15 C 1.46951 * 120.00037 * 359.97438 * 13 4 3 16 16 C 1.33120 * 120.00147 * 184.70407 * 15 13 4 17 17 C 1.51268 * 120.84911 * 14.96604 * 16 15 13 18 18 C 1.53667 * 108.30913 * 128.62413 * 17 16 15 19 19 C 1.52955 * 109.32656 * 54.85844 * 18 17 16 20 20 C 1.52961 * 109.81825 * 296.27385 * 19 18 17 21 21 C 1.51269 * 120.84691 * 195.25195 * 16 15 13 22 22 H 1.09003 * 109.46808 * 299.99539 * 1 2 3 23 23 H 1.09000 * 109.47358 * 60.00028 * 1 2 3 24 24 H 1.09006 * 109.46729 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47091 * 240.00047 * 2 1 3 26 26 H 1.08998 * 109.47884 * 119.99422 * 2 1 3 27 27 H 1.08999 * 109.47244 * 60.00141 * 3 2 1 28 28 H 1.09008 * 109.46611 * 299.99828 * 3 2 1 29 29 H 0.97000 * 120.00208 * 180.02562 * 8 7 5 30 30 H 1.08007 * 119.99852 * 4.69621 * 15 13 4 31 31 H 1.09005 * 109.62682 * 248.39198 * 17 16 15 32 32 H 1.08994 * 109.62984 * 8.96355 * 17 16 15 33 33 H 1.08996 * 109.62465 * 294.83890 * 18 17 16 34 34 H 1.08997 * 109.42612 * 174.75947 * 18 17 16 35 35 H 1.08996 * 109.41620 * 176.16459 * 19 18 17 36 36 H 1.08996 * 109.41204 * 56.37899 * 19 18 17 37 37 H 1.09000 * 109.48316 * 303.62172 * 20 19 18 38 38 H 1.08999 * 109.48226 * 183.57359 * 20 19 18 39 39 H 1.08996 * 109.62883 * 351.03322 * 21 16 15 40 40 H 1.09002 * 109.62727 * 111.61083 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4427 -0.0006 5 6 4.1894 1.5858 1.1753 6 1 5.0959 1.0236 1.3444 7 6 3.7180 2.4554 2.1529 8 7 2.7627 3.3101 1.8664 9 14 4.4434 2.4079 3.8736 10 1 5.8981 2.6990 3.8058 11 1 3.7742 3.4271 4.7213 12 1 4.2352 1.0603 4.4616 13 6 4.1783 1.3018 -1.1596 14 8 5.3949 1.2968 -1.1594 15 6 3.4431 1.1475 -2.4225 16 6 4.1050 0.9147 -3.5539 17 6 5.5519 0.4744 -3.5295 18 6 5.6886 -0.7832 -4.4020 19 6 5.1429 -0.4907 -5.8006 20 6 3.6464 -0.1846 -5.7198 21 6 3.4311 1.0900 -4.8968 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5137 0.8900 27 1 1.6766 1.9564 0.8900 28 1 1.6765 1.9564 -0.8901 29 1 2.4341 3.9168 2.5481 30 1 2.3657 1.2228 -2.4329 31 1 6.1833 1.2693 -3.9265 32 1 5.8477 0.2451 -2.5058 33 1 5.1242 -1.6017 -3.9553 34 1 6.7397 -1.0627 -4.4729 35 1 5.3010 -1.3590 -6.4401 36 1 5.6661 0.3679 -6.2213 37 1 3.1302 -1.0173 -5.2420 38 1 3.2502 -0.0395 -6.7248 39 1 2.3637 1.2563 -4.7519 40 1 3.8697 1.9408 -5.4182 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299156315.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:20 Heat of formation + Delta-G solvation = -52.319851 kcal Electronic energy + Delta-G solvation = -19141.941432 eV Core-core repulsion = 16341.651186 eV Total energy + Delta-G solvation = -2800.290247 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.73982 -38.90185 -37.06297 -34.63394 -33.32444 -32.99168 -31.77892 -28.50040 -27.25302 -25.93743 -23.75693 -22.75515 -22.25544 -20.94042 -18.94289 -18.79511 -17.91451 -16.79869 -16.30422 -15.77284 -15.51996 -15.34828 -15.08688 -15.03742 -14.40797 -14.24183 -13.94973 -13.51034 -13.41763 -13.15538 -13.09604 -12.99356 -12.71441 -12.57273 -12.28731 -12.11296 -11.97510 -11.90296 -11.68858 -11.57174 -11.37757 -11.10327 -10.87915 -10.04794 -9.65265 -9.34244 -8.29460 -6.08348 0.61934 1.38989 1.42124 1.49847 2.28050 2.57221 3.12555 3.16376 3.87099 3.89223 4.10533 4.11627 4.21736 4.30717 4.36421 4.45219 4.54424 4.56433 4.62348 4.71853 4.80345 4.85191 4.99962 5.05814 5.12089 5.14791 5.19082 5.23120 5.24344 5.29582 5.39539 5.44265 5.45026 5.50963 5.63697 5.73711 5.90698 6.27031 6.61182 7.20560 7.50950 8.13887 8.69446 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.025644 B = 0.006260 C = 0.005433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.602020 B = 4471.566466 C = 5152.356510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.130 4.130 3 C 0.103 3.897 4 N -0.450 5.450 5 C -0.336 4.336 6 H 0.062 0.938 7 C -0.001 4.001 8 N -0.893 5.893 9 Si 0.986 3.014 10 H -0.278 1.278 11 H -0.269 1.269 12 H -0.264 1.264 13 C 0.471 3.529 14 O -0.623 6.623 15 C -0.228 4.228 16 C -0.043 4.043 17 C -0.117 4.117 18 C -0.110 4.110 19 C -0.117 4.117 20 C -0.111 4.111 21 C -0.085 4.085 22 H 0.050 0.950 23 H 0.065 0.935 24 H 0.069 0.931 25 H 0.054 0.946 26 H 0.041 0.959 27 H 0.096 0.904 28 H 0.056 0.944 29 H 0.274 0.726 30 H 0.134 0.866 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.053 0.947 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.714 -6.412 -11.836 14.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.169 4.169 3 C -0.020 4.020 4 N -0.166 5.166 5 C -0.465 4.465 6 H 0.080 0.920 7 C -0.202 4.202 8 N -0.532 5.532 9 Si 0.809 3.191 10 H -0.204 1.204 11 H -0.193 1.193 12 H -0.189 1.189 13 C 0.265 3.735 14 O -0.513 6.513 15 C -0.248 4.248 16 C -0.045 4.045 17 C -0.153 4.153 18 C -0.148 4.148 19 C -0.155 4.155 20 C -0.149 4.149 21 C -0.122 4.122 22 H 0.069 0.931 23 H 0.084 0.916 24 H 0.088 0.912 25 H 0.072 0.928 26 H 0.060 0.940 27 H 0.114 0.886 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.151 0.849 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.108 0.892 39 H 0.100 0.900 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.285 -6.250 -11.680 13.923 hybrid contribution 0.523 0.345 1.288 1.432 sum -3.762 -5.905 -10.392 12.531 Atomic orbital electron populations 1.21617 0.93158 1.02358 1.02180 1.21879 0.97524 0.96706 1.00752 1.21794 0.80195 0.96456 1.03563 1.43657 1.06101 1.62016 1.04854 1.19391 1.09608 1.23942 0.93535 0.92003 1.26199 0.97116 0.93137 1.03785 1.69822 1.28532 1.19249 1.35568 0.85119 0.78165 0.78647 0.77140 1.20401 1.19297 1.18891 1.19334 0.87397 0.81635 0.85150 1.90418 1.15747 1.57946 1.87146 1.22509 1.00048 1.10077 0.92210 1.22921 0.96181 0.90530 0.94894 1.21428 0.93163 0.97913 1.02845 1.21636 1.01205 0.96061 0.95886 1.21543 0.95977 1.02282 0.95677 1.21574 0.96491 0.96376 1.00426 1.20980 1.00467 0.99659 0.91095 0.93069 0.91588 0.91155 0.92776 0.93997 0.88581 0.92539 0.91605 0.84881 0.92019 0.90253 0.92819 0.91343 0.90143 0.91581 0.92066 0.89164 0.89957 0.89278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.85 9.91 71.98 0.71 -3.13 16 2 C -0.13 -4.89 6.09 30.60 0.19 -4.71 16 3 C 0.10 4.73 4.54 86.38 0.39 5.12 16 4 N -0.45 -24.49 2.54 -639.79 -1.63 -26.12 16 5 C -0.34 -19.87 8.94 84.12 0.75 -19.11 16 6 H 0.06 3.87 7.72 -2.91 -0.02 3.85 16 7 C 0.00 -0.04 5.12 84.97 0.43 0.39 16 8 N -0.89 -49.29 11.04 21.68 0.24 -49.05 16 9 Si 0.99 43.66 29.57 68.60 2.03 45.68 16 10 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 12 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 13 C 0.47 25.07 7.38 86.53 0.64 25.71 16 14 O -0.62 -37.04 13.13 -4.22 -0.06 -37.09 16 15 C -0.23 -9.37 8.21 23.40 0.19 -9.18 16 16 C -0.04 -1.49 5.37 -17.24 -0.09 -1.58 16 17 C -0.12 -4.26 5.27 30.25 0.16 -4.10 16 18 C -0.11 -3.00 5.95 30.80 0.18 -2.81 16 19 C -0.12 -2.38 5.81 30.57 0.18 -2.20 16 20 C -0.11 -2.15 5.94 30.66 0.18 -1.97 16 21 C -0.09 -2.06 6.04 30.11 0.18 -1.88 16 22 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 23 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 25 H 0.05 1.97 7.45 -2.39 -0.02 1.96 16 26 H 0.04 1.71 8.14 -2.39 -0.02 1.70 16 27 H 0.10 4.86 5.30 -2.39 -0.01 4.85 16 28 H 0.06 2.40 6.45 -2.38 -0.02 2.39 16 29 H 0.27 14.08 8.31 -92.71 -0.77 13.31 16 30 H 0.13 4.84 6.13 -2.91 -0.02 4.82 16 31 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 32 H 0.08 3.69 4.92 -8.83 -0.04 3.65 16 33 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.06 1.22 8.14 -2.39 -0.02 1.21 16 38 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.08 1.79 7.93 -2.39 -0.02 1.77 16 40 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -69.03 314.07 5.66 -63.37 By element: Atomic # 1 Polarization: 21.68 SS G_CDS: 0.97 Total: 22.65 kcal Atomic # 6 Polarization: -23.55 SS G_CDS: 4.10 Total: -19.45 kcal Atomic # 7 Polarization: -73.78 SS G_CDS: -1.39 Total: -75.17 kcal Atomic # 8 Polarization: -37.04 SS G_CDS: -0.06 Total: -37.09 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Total: -69.03 5.66 -63.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299156315.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.053 kcal (2) G-P(sol) polarization free energy of solvation -69.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds