Wall clock time and date at job start Sun Mar 29 2020 23:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46630 * 2 1 4 4 C 1.50703 * 109.47063 * 119.99447 * 2 1 3 5 5 O 1.21283 * 119.99488 * 120.00024 * 4 2 1 6 6 N 1.34777 * 120.00290 * 300.00464 * 4 2 1 7 7 C 1.46498 * 119.99828 * 180.27728 * 6 4 2 8 8 H 1.09005 * 110.01652 * 326.11198 * 7 6 4 9 9 C 1.54264 * 110.03550 * 87.55371 * 7 6 4 10 10 C 1.54893 * 104.19605 * 95.67057 * 9 7 6 11 11 C 1.54898 * 102.74705 * 37.94535 * 10 9 7 12 12 H 1.09004 * 110.59585 * 80.78837 * 11 10 9 13 13 C 1.50698 * 110.48606 * 203.37940 * 11 10 9 14 14 H 1.08000 * 119.99981 * 114.77286 * 13 11 10 15 15 C 1.37877 * 119.99880 * 294.77075 * 13 11 10 16 16 N 1.31517 * 119.99972 * 0.02562 * 15 13 11 17 17 Si 1.86802 * 119.99856 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.46805 * 90.00470 * 17 15 13 19 19 H 1.48505 * 109.46838 * 210.00187 * 17 15 13 20 20 H 1.48497 * 109.47230 * 330.00197 * 17 15 13 21 21 C 1.53879 * 110.03045 * 204.71910 * 7 6 4 22 22 C 1.52990 * 109.47358 * 239.99894 * 2 1 3 23 23 C 1.53000 * 117.50105 * 128.74478 * 22 2 1 24 24 C 1.53005 * 117.50252 * 60.08244 * 22 2 1 25 25 H 1.08993 * 109.46731 * 60.00419 * 1 2 3 26 26 H 1.09003 * 109.46582 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46852 * 300.00183 * 1 2 3 28 28 H 0.97001 * 119.99727 * 359.97438 * 6 4 2 29 29 H 1.08997 * 110.49170 * 214.34913 * 9 7 6 30 30 H 1.09000 * 110.48944 * 336.99571 * 9 7 6 31 31 H 1.08997 * 110.76175 * 279.63083 * 10 9 7 32 32 H 1.09000 * 110.75744 * 156.25225 * 10 9 7 33 33 H 0.97003 * 120.00193 * 180.02562 * 16 15 13 34 34 H 1.08994 * 110.03158 * 0.02562 * 21 7 6 35 35 H 1.09000 * 110.02830 * 121.37722 * 21 7 6 36 36 H 1.09007 * 115.55157 * 274.41596 * 22 2 1 37 37 H 1.08993 * 117.49709 * 0.02562 * 23 22 2 38 38 H 1.08999 * 117.49890 * 145.02264 * 23 22 2 39 39 H 1.08992 * 117.50276 * 214.98645 * 24 22 2 40 40 H 1.09001 * 117.49189 * 0.02562 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2306 5 8 2.7297 -1.6964 1.1193 6 7 1.7068 -0.2498 2.4546 7 6 2.2001 -0.9368 3.6508 8 1 2.2635 -2.0092 3.4657 9 6 3.5859 -0.3846 4.0437 10 6 3.2769 0.6882 5.1174 11 6 2.1133 0.0482 5.9149 12 1 2.4949 -0.6731 6.6376 13 6 1.3030 1.1116 6.6103 14 1 0.2749 1.2798 6.3254 15 6 1.8741 1.8698 7.6103 16 7 3.1262 1.6653 7.9569 17 14 0.8695 3.1874 8.4728 18 1 0.1868 2.5968 9.6518 19 1 1.7680 4.2827 8.9183 20 1 -0.1449 3.7303 7.5339 21 6 1.2639 -0.6616 4.8406 22 6 2.0401 -0.7212 -1.2491 23 6 3.0764 0.0040 -2.1100 24 6 1.6375 -0.1484 -2.6096 25 1 -0.3632 0.5137 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.1493 0.5390 2.5436 29 1 4.2072 -1.1760 4.4629 30 1 4.0745 0.0687 3.1812 31 1 2.9588 1.6208 4.6514 32 1 4.1418 0.8516 5.7603 33 1 3.5280 2.1985 8.6607 34 1 0.4423 -0.0173 4.5278 35 1 0.8728 -1.6004 5.2328 36 1 2.1254 -1.8046 -1.1646 37 1 3.3951 0.9947 -1.7862 38 1 3.8432 -0.6023 -2.5921 39 1 1.4583 -0.8548 -3.4200 40 1 1.0096 0.7425 -2.6146 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331828887.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:25:48 Heat of formation + Delta-G solvation = -57.036376 kcal Electronic energy + Delta-G solvation = -18668.669906 eV Core-core repulsion = 15868.175136 eV Total energy + Delta-G solvation = -2800.494771 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.16472 -39.07384 -37.87733 -35.24113 -34.01598 -32.61898 -29.95636 -28.72657 -26.12500 -25.57726 -23.12208 -22.71436 -21.23586 -20.88516 -20.38112 -18.51289 -18.24402 -17.17190 -16.61903 -16.27258 -16.01701 -15.61501 -15.13565 -14.91952 -14.45192 -14.02446 -13.84499 -13.55663 -13.13078 -12.94818 -12.89775 -12.76659 -12.48824 -12.35967 -12.26724 -12.18411 -11.82588 -11.65546 -11.45083 -11.24869 -11.07302 -10.89227 -10.80868 -10.60569 -10.43828 -9.93460 -8.08907 -6.18712 1.44042 1.45251 1.54590 1.71577 2.27553 2.46422 2.96946 3.22471 3.69752 3.72864 3.96373 4.00501 4.05905 4.17297 4.21897 4.37206 4.51966 4.56517 4.69871 4.76289 4.81036 4.90258 4.95404 4.99974 5.01566 5.07886 5.11418 5.19073 5.26206 5.28719 5.32611 5.39821 5.44325 5.67265 5.72182 5.91257 6.00310 6.39169 6.67739 6.92698 7.34226 7.49112 9.00085 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.035092 B = 0.004489 C = 0.004295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.701373 B = 6235.893299 C = 6517.094811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.073 4.073 3 H 0.111 0.889 4 C 0.512 3.488 5 O -0.587 6.587 6 N -0.708 5.708 7 C 0.151 3.849 8 H 0.072 0.928 9 C -0.126 4.126 10 C -0.087 4.087 11 C 0.038 3.962 12 H -0.001 1.001 13 C -0.527 4.527 14 H 0.060 0.940 15 C 0.011 3.989 16 N -0.922 5.922 17 Si 0.953 3.047 18 H -0.279 1.279 19 H -0.289 1.289 20 H -0.263 1.263 21 C -0.109 4.109 22 C -0.153 4.153 23 C -0.187 4.187 24 C -0.155 4.155 25 H 0.089 0.911 26 H 0.052 0.948 27 H 0.069 0.931 28 H 0.410 0.590 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.041 0.959 32 H 0.035 0.965 33 H 0.258 0.742 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.103 0.897 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.458 -0.422 -17.963 18.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.094 4.094 3 H 0.129 0.871 4 C 0.300 3.700 5 O -0.467 6.467 6 N -0.359 5.359 7 C 0.046 3.954 8 H 0.090 0.910 9 C -0.165 4.165 10 C -0.126 4.126 11 C 0.019 3.981 12 H 0.017 0.983 13 C -0.565 4.565 14 H 0.078 0.922 15 C -0.188 4.188 16 N -0.561 5.561 17 Si 0.779 3.221 18 H -0.205 1.205 19 H -0.214 1.214 20 H -0.187 1.187 21 C -0.147 4.147 22 C -0.171 4.171 23 C -0.224 4.224 24 C -0.192 4.192 25 H 0.108 0.892 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.247 0.753 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.108 0.892 37 H 0.117 0.883 38 H 0.110 0.890 39 H 0.121 0.879 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -4.853 -1.062 -17.909 18.585 hybrid contribution -0.073 0.808 1.138 1.397 sum -4.926 -0.254 -16.771 17.481 Atomic orbital electron populations 1.21763 0.90885 1.02781 1.04054 1.20884 0.98696 0.99986 0.89857 0.87101 1.21217 0.79153 0.84103 0.85490 1.90638 1.40018 1.28643 1.87413 1.46192 1.52781 1.32003 1.04937 1.21431 0.93504 0.95990 0.84519 0.91022 1.22731 0.96551 0.98821 0.98370 1.22212 0.98990 0.96216 0.95133 1.19451 0.92734 0.93705 0.92163 0.98302 1.21562 0.98140 1.18148 1.18630 0.92157 1.25779 0.95840 0.99514 0.97671 1.70104 1.13696 1.41518 1.30817 0.85634 0.78672 0.78880 0.78927 1.20502 1.21447 1.18687 1.22417 0.97891 1.00140 0.94294 1.21948 1.05317 0.98903 0.90975 1.23104 0.93235 1.01973 1.04037 1.23072 0.97176 1.03477 0.95477 0.89228 0.92853 0.91177 0.75323 0.92300 0.92644 0.93980 0.94639 0.93262 0.90869 0.92072 0.89215 0.88337 0.89046 0.87882 0.86973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 8.93 71.98 0.64 -1.56 16 2 C -0.07 -1.52 2.88 -11.54 -0.03 -1.56 16 3 H 0.11 1.98 7.90 -2.39 -0.02 1.96 16 4 C 0.51 15.28 7.15 87.66 0.63 15.91 16 5 O -0.59 -22.35 15.30 -3.04 -0.05 -22.40 16 6 N -0.71 -20.95 4.92 -439.09 -2.16 -23.11 16 7 C 0.15 5.37 3.24 45.72 0.15 5.52 16 8 H 0.07 2.66 7.57 -2.38 -0.02 2.64 16 9 C -0.13 -4.95 6.54 31.67 0.21 -4.74 16 10 C -0.09 -4.04 5.75 31.89 0.18 -3.85 16 11 C 0.04 1.85 2.72 -10.46 -0.03 1.83 16 12 H 0.00 -0.07 8.14 -2.38 -0.02 -0.09 16 13 C -0.53 -27.80 8.46 25.60 0.22 -27.58 16 14 H 0.06 3.05 7.54 -2.91 -0.02 3.02 16 15 C 0.01 0.57 5.35 84.65 0.45 1.02 16 16 N -0.92 -53.27 12.29 21.45 0.26 -53.01 16 17 Si 0.95 42.50 29.54 68.60 2.03 44.53 16 18 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 19 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 20 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 21 C -0.11 -4.20 6.13 31.32 0.19 -4.01 16 22 C -0.15 -3.24 4.75 -10.80 -0.05 -3.29 16 23 C -0.19 -3.42 10.18 30.62 0.31 -3.11 16 24 C -0.16 -2.28 9.74 30.62 0.30 -1.98 16 25 H 0.09 1.04 7.29 -2.39 -0.02 1.02 16 26 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.07 1.03 7.56 -2.39 -0.02 1.02 16 28 H 0.41 10.36 7.74 -92.71 -0.72 9.64 16 29 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.05 2.10 8.04 -2.39 -0.02 2.08 16 31 H 0.04 1.94 8.05 -2.39 -0.02 1.92 16 32 H 0.03 1.83 7.55 -2.39 -0.02 1.81 16 33 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 34 H 0.07 2.63 7.13 -2.39 -0.02 2.62 16 35 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.09 2.36 7.47 -2.38 -0.02 2.35 16 37 H 0.10 1.68 8.05 -2.39 -0.02 1.66 16 38 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.11 1.26 7.61 -2.39 -0.02 1.24 16 Total: -1.00 -64.20 321.88 3.54 -60.66 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: 0.29 Total: 20.75 kcal Atomic # 6 Polarization: -30.58 SS G_CDS: 3.17 Total: -27.41 kcal Atomic # 7 Polarization: -74.22 SS G_CDS: -1.90 Total: -76.12 kcal Atomic # 8 Polarization: -22.35 SS G_CDS: -0.05 Total: -22.40 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -64.20 3.54 -60.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331828887.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.620 kcal (2) G-P(sol) polarization free energy of solvation -64.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds