Wall clock time and date at job start Sun Mar 29 2020 23:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47563 * 2 1 4 4 C 1.50695 * 109.47448 * 120.00368 * 2 1 3 5 5 H 1.08004 * 120.00546 * 120.27461 * 4 2 1 6 6 C 1.37885 * 119.99721 * 299.99712 * 4 2 1 7 7 N 1.31514 * 120.00035 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99853 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47228 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46793 * 120.00131 * 8 6 4 11 11 H 1.48500 * 109.47000 * 240.00224 * 8 6 4 12 12 N 1.46506 * 109.47094 * 240.00251 * 2 1 3 13 13 C 1.34767 * 120.00042 * 84.99823 * 12 2 1 14 14 O 1.21284 * 120.00486 * 0.02562 * 13 12 2 15 15 C 1.50707 * 119.99999 * 180.02562 * 13 12 2 16 16 H 1.08997 * 109.47274 * 59.99659 * 15 13 12 17 17 C 1.52999 * 109.46791 * 299.99740 * 15 13 12 18 18 C 1.53000 * 109.47075 * 240.00097 * 17 15 13 19 19 C 1.52993 * 109.47184 * 60.00328 * 18 17 15 20 20 C 1.53002 * 109.47315 * 299.99576 * 19 18 17 21 21 C 1.52997 * 109.47155 * 179.97438 * 15 13 12 22 22 C 1.53002 * 109.47251 * 179.97438 * 21 15 13 23 23 C 1.52999 * 109.46935 * 299.99939 * 22 21 15 24 24 H 1.09002 * 109.47168 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46887 * 300.00064 * 1 2 3 26 26 H 1.09005 * 109.47504 * 59.99875 * 1 2 3 27 27 H 0.97000 * 119.99706 * 179.97438 * 7 6 4 28 28 H 0.97000 * 120.00021 * 265.00203 * 12 2 1 29 29 H 1.09006 * 109.47228 * 0.02562 * 17 15 13 30 30 H 1.09001 * 109.46882 * 120.00131 * 17 15 13 31 31 H 1.09000 * 109.47055 * 180.02562 * 18 17 15 32 32 H 1.09001 * 109.47339 * 179.97438 * 19 18 17 33 33 H 1.08997 * 109.47660 * 60.00217 * 19 18 17 34 34 H 1.08997 * 109.47726 * 240.00156 * 20 19 18 35 35 H 1.08996 * 109.46975 * 119.99468 * 20 19 18 36 36 H 1.09000 * 109.47121 * 299.99978 * 21 15 13 37 37 H 1.08997 * 109.47034 * 59.99800 * 22 21 15 38 38 H 1.09002 * 109.47015 * 180.02562 * 22 21 15 39 39 H 1.08999 * 109.47515 * 239.99930 * 23 22 21 40 40 H 1.09001 * 109.46882 * 119.99926 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6570 -1.5860 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.1465 -2.2871 3.6037 10 1 3.1467 -0.1874 4.8164 11 1 1.1662 -1.5868 4.8160 12 7 2.0183 -0.6906 -1.1963 13 6 2.1470 -0.0182 -2.3571 14 8 1.8590 1.1586 -2.4115 15 6 2.6488 -0.7288 -3.5878 16 1 1.9759 -1.5506 -3.8326 17 6 4.0512 -1.2797 -3.3223 18 6 5.0377 -0.6638 -4.3165 19 6 5.0473 0.8570 -4.1498 20 6 3.6449 1.4080 -4.4153 21 6 2.6997 0.2542 -4.7591 22 6 3.2098 -0.4670 -6.0084 23 6 4.6126 -1.0169 -5.7427 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 0.7082 1.1608 3.4845 28 1 2.2490 -1.6318 -1.1527 29 1 4.3542 -1.0278 -2.3060 30 1 4.0444 -2.3632 -3.4411 31 1 6.0368 -1.0566 -4.1277 32 1 5.7504 1.2957 -4.8578 33 1 5.3504 1.1093 -3.1337 34 1 3.6815 2.1084 -5.2496 35 1 3.2819 1.9218 -3.5252 36 1 1.7004 0.6464 -4.9481 37 1 2.5375 -1.2893 -6.2531 38 1 3.2465 0.2335 -6.8427 39 1 5.3152 -0.5778 -6.4510 40 1 4.6065 -2.1004 -5.8613 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335144075.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:34:09 Heat of formation + Delta-G solvation = -69.067895 kcal Electronic energy + Delta-G solvation = -19485.137702 eV Core-core repulsion = 16684.121206 eV Total energy + Delta-G solvation = -2801.016496 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.72581 -37.98339 -34.74743 -32.50960 -31.27089 -31.03756 -30.59935 -28.47360 -25.24029 -23.53706 -22.38049 -21.93483 -20.77930 -19.29702 -17.40646 -16.36104 -16.31712 -15.90315 -15.52672 -15.08332 -14.60136 -13.80365 -13.67794 -12.79981 -12.50499 -12.37328 -12.02198 -11.94150 -11.88856 -11.84062 -11.79613 -11.73461 -11.40352 -11.05379 -10.89602 -10.68092 -10.54326 -10.28696 -10.22177 -9.91475 -9.70676 -9.67243 -9.00912 -8.65299 -8.52342 -7.80558 -6.10728 -4.19690 3.24171 3.31942 3.34631 3.49551 4.13953 4.39390 4.61901 4.77228 4.85720 5.21536 5.29293 5.36163 5.40824 5.45974 5.48312 5.52361 5.59562 5.63994 5.72322 5.79833 5.94844 6.05952 6.17683 6.21436 6.33348 6.42222 6.49651 6.52475 6.64797 6.83578 6.87997 7.01031 7.18837 7.52986 7.61683 7.73015 7.95344 8.18105 8.74024 8.82366 9.22302 9.48592 10.95240 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.035978 B = 0.005502 C = 0.005204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.075071 B = 5087.871069 C = 5378.979849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.264 3.736 3 H 0.047 0.953 4 C -0.531 4.531 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.900 3.100 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.710 5.710 13 C 0.507 3.493 14 O -0.552 6.552 15 C -0.104 4.104 16 H 0.087 0.913 17 C -0.107 4.107 18 C -0.085 4.085 19 C -0.113 4.113 20 C -0.126 4.126 21 C -0.062 4.062 22 C -0.114 4.114 23 C -0.112 4.112 24 H 0.025 0.975 25 H 0.089 0.911 26 H 0.014 0.986 27 H 0.263 0.737 28 H 0.387 0.613 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.051 0.949 35 H 0.096 0.904 36 H 0.073 0.927 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.100 -4.750 -14.198 16.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.162 3.838 3 H 0.065 0.935 4 C -0.570 4.570 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.728 3.272 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.358 5.358 13 C 0.292 3.708 14 O -0.431 6.431 15 C -0.126 4.126 16 H 0.105 0.895 17 C -0.145 4.145 18 C -0.103 4.103 19 C -0.151 4.151 20 C -0.163 4.163 21 C -0.081 4.081 22 C -0.151 4.151 23 C -0.149 4.149 24 H 0.044 0.956 25 H 0.108 0.892 26 H 0.033 0.967 27 H 0.073 0.927 28 H 0.219 0.781 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.114 0.886 36 H 0.091 0.909 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.797 -3.780 -14.051 15.663 hybrid contribution 0.348 -0.987 0.930 1.400 sum 6.145 -4.767 -13.121 15.253 Atomic orbital electron populations 1.22069 0.98610 0.99008 1.00818 1.18708 0.90931 0.93948 0.80195 0.93490 1.21269 1.32088 1.13259 0.90385 0.92107 1.24895 0.94867 0.94945 0.99053 1.69918 1.36008 1.22520 1.23697 0.86410 0.78600 0.79536 0.82651 1.19760 1.20899 1.20886 1.46531 1.65122 1.13458 1.10640 1.20428 0.78202 0.87480 0.84713 1.90562 1.51289 1.16146 1.85139 1.21340 0.97796 0.98871 0.94574 0.89489 1.21576 0.93290 0.99614 1.00014 1.21003 0.98383 0.96100 0.94816 1.21547 0.97564 0.94676 1.01317 1.21787 0.94069 0.97218 1.03231 1.20738 0.99698 0.94896 0.92719 1.21569 0.96426 0.99637 0.97487 1.21529 0.96828 1.00214 0.96347 0.95575 0.89250 0.96699 0.92680 0.78066 0.90931 0.91556 0.91386 0.92657 0.92156 0.92993 0.88584 0.90887 0.92281 0.92083 0.92329 0.92281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.70 9.26 37.15 0.34 -3.35 16 2 C 0.26 6.77 2.56 -69.08 -0.18 6.60 16 3 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 4 C -0.53 -14.17 8.73 -34.44 -0.30 -14.47 16 5 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -25.09 11.32 55.43 0.63 -24.47 16 8 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 9 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 N -0.71 -14.88 4.81 -54.93 -0.26 -15.14 16 13 C 0.51 10.05 6.57 -10.99 -0.07 9.98 16 14 O -0.55 -12.93 13.32 5.55 0.07 -12.86 16 15 C -0.10 -1.55 2.56 -91.77 -0.24 -1.78 16 16 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 17 C -0.11 -1.40 5.21 -26.73 -0.14 -1.54 16 18 C -0.08 -1.00 3.19 -90.65 -0.29 -1.29 16 19 C -0.11 -1.50 5.71 -26.73 -0.15 -1.65 16 20 C -0.13 -1.87 5.39 -26.70 -0.14 -2.02 16 21 C -0.06 -0.87 2.37 -90.59 -0.21 -1.08 16 22 C -0.11 -1.26 5.71 -26.73 -0.15 -1.41 16 23 C -0.11 -1.15 5.70 -26.75 -0.15 -1.30 16 24 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 26 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 28 H 0.39 7.12 8.44 -40.82 -0.34 6.78 16 29 H 0.07 1.08 7.44 -51.93 -0.39 0.70 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.10 1.78 5.51 -51.93 -0.29 1.50 16 36 H 0.07 1.11 8.10 -51.93 -0.42 0.69 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 305.46 15.07 4.60 4.60 Total: -1.00 -29.47 305.46 -8.52 -37.99 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -6.76 Total: 5.79 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: -1.78 Total: -11.64 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: 0.36 Total: -39.61 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: 0.07 Total: -12.86 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.47 -8.52 -37.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335144075.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.073 kcal (2) G-P(sol) polarization free energy of solvation -29.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds