Wall clock time and date at job start Sun Mar 29 2020 23:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47563 * 2 1 4 4 C 1.50695 * 109.47448 * 120.00368 * 2 1 3 5 5 H 1.08004 * 120.00546 * 120.27461 * 4 2 1 6 6 C 1.37885 * 119.99721 * 299.99712 * 4 2 1 7 7 N 1.31514 * 120.00035 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99853 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47228 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46793 * 120.00131 * 8 6 4 11 11 H 1.48500 * 109.47000 * 240.00224 * 8 6 4 12 12 N 1.46506 * 109.47094 * 240.00251 * 2 1 3 13 13 C 1.34767 * 120.00042 * 84.99823 * 12 2 1 14 14 O 1.21284 * 120.00486 * 0.02562 * 13 12 2 15 15 C 1.50707 * 119.99999 * 180.02562 * 13 12 2 16 16 H 1.08997 * 109.47274 * 59.99659 * 15 13 12 17 17 C 1.52999 * 109.46791 * 299.99740 * 15 13 12 18 18 C 1.53000 * 109.47075 * 240.00097 * 17 15 13 19 19 C 1.52993 * 109.47184 * 60.00328 * 18 17 15 20 20 C 1.53002 * 109.47315 * 299.99576 * 19 18 17 21 21 C 1.52997 * 109.47155 * 179.97438 * 15 13 12 22 22 C 1.53002 * 109.47251 * 179.97438 * 21 15 13 23 23 C 1.52999 * 109.46935 * 299.99939 * 22 21 15 24 24 H 1.09002 * 109.47168 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46887 * 300.00064 * 1 2 3 26 26 H 1.09005 * 109.47504 * 59.99875 * 1 2 3 27 27 H 0.97000 * 119.99706 * 179.97438 * 7 6 4 28 28 H 0.97000 * 120.00021 * 265.00203 * 12 2 1 29 29 H 1.09006 * 109.47228 * 0.02562 * 17 15 13 30 30 H 1.09001 * 109.46882 * 120.00131 * 17 15 13 31 31 H 1.09000 * 109.47055 * 180.02562 * 18 17 15 32 32 H 1.09001 * 109.47339 * 179.97438 * 19 18 17 33 33 H 1.08997 * 109.47660 * 60.00217 * 19 18 17 34 34 H 1.08997 * 109.47726 * 240.00156 * 20 19 18 35 35 H 1.08996 * 109.46975 * 119.99468 * 20 19 18 36 36 H 1.09000 * 109.47121 * 299.99978 * 21 15 13 37 37 H 1.08997 * 109.47034 * 59.99800 * 22 21 15 38 38 H 1.09002 * 109.47015 * 180.02562 * 22 21 15 39 39 H 1.08999 * 109.47515 * 239.99930 * 23 22 21 40 40 H 1.09001 * 109.46882 * 119.99926 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6570 -1.5860 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.1465 -2.2871 3.6037 10 1 3.1467 -0.1874 4.8164 11 1 1.1662 -1.5868 4.8160 12 7 2.0183 -0.6906 -1.1963 13 6 2.1470 -0.0182 -2.3571 14 8 1.8590 1.1586 -2.4115 15 6 2.6488 -0.7288 -3.5878 16 1 1.9759 -1.5506 -3.8326 17 6 4.0512 -1.2797 -3.3223 18 6 5.0377 -0.6638 -4.3165 19 6 5.0473 0.8570 -4.1498 20 6 3.6449 1.4080 -4.4153 21 6 2.6997 0.2542 -4.7591 22 6 3.2098 -0.4670 -6.0084 23 6 4.6126 -1.0169 -5.7427 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 0.7082 1.1608 3.4845 28 1 2.2490 -1.6318 -1.1527 29 1 4.3542 -1.0278 -2.3060 30 1 4.0444 -2.3632 -3.4411 31 1 6.0368 -1.0566 -4.1277 32 1 5.7504 1.2957 -4.8578 33 1 5.3504 1.1093 -3.1337 34 1 3.6815 2.1084 -5.2496 35 1 3.2819 1.9218 -3.5252 36 1 1.7004 0.6464 -4.9481 37 1 2.5375 -1.2893 -6.2531 38 1 3.2465 0.2335 -6.8427 39 1 5.3152 -0.5778 -6.4510 40 1 4.6065 -2.1004 -5.8613 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335144075.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:34:09 Heat of formation + Delta-G solvation = -86.683302 kcal Electronic energy + Delta-G solvation = -19485.901564 eV Core-core repulsion = 16684.121206 eV Total energy + Delta-G solvation = -2801.780358 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.94489 -39.51647 -36.67253 -34.40075 -32.56252 -32.18122 -31.59731 -30.28586 -27.35781 -24.87381 -23.36369 -23.12776 -22.40265 -21.03020 -19.05820 -17.69007 -17.44037 -17.36560 -17.11290 -16.43248 -16.28786 -15.35372 -15.27202 -14.46252 -14.13208 -13.71666 -13.56224 -13.17130 -13.03755 -12.94360 -12.89662 -12.87311 -12.85349 -12.81014 -12.63633 -12.48473 -12.26788 -12.10298 -11.56289 -11.12971 -11.07331 -10.73468 -10.65268 -10.62067 -10.20839 -9.63809 -8.18429 -6.36082 1.43237 1.43952 1.56353 1.90456 2.35836 2.68233 3.11873 3.57936 3.74101 3.78454 4.16837 4.31266 4.39622 4.40658 4.46856 4.48856 4.55763 4.61409 4.67131 4.74955 4.77839 4.90604 4.94706 5.09173 5.16459 5.18385 5.24526 5.34895 5.41935 5.43551 5.49983 5.54602 5.58517 5.61634 5.67708 5.72760 5.93043 6.10591 6.72857 7.03185 7.32458 7.63544 8.88117 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.035978 B = 0.005502 C = 0.005204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.075071 B = 5087.871069 C = 5378.979849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.271 3.729 3 H -0.006 1.006 4 C -0.544 4.544 5 H 0.073 0.927 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.973 3.027 9 H -0.259 1.259 10 H -0.284 1.284 11 H -0.278 1.278 12 N -0.707 5.707 13 C 0.499 3.501 14 O -0.594 6.594 15 C -0.094 4.094 16 H 0.113 0.887 17 C -0.105 4.105 18 C -0.083 4.083 19 C -0.113 4.113 20 C -0.127 4.127 21 C -0.064 4.064 22 C -0.107 4.107 23 C -0.106 4.106 24 H 0.040 0.960 25 H 0.065 0.935 26 H 0.010 0.990 27 H 0.265 0.735 28 H 0.403 0.597 29 H 0.047 0.953 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.034 0.966 34 H 0.062 0.938 35 H 0.048 0.952 36 H 0.053 0.947 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.543 -7.594 -15.674 18.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.167 3.833 3 H 0.011 0.989 4 C -0.583 4.583 5 H 0.091 0.909 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.798 3.202 9 H -0.183 1.183 10 H -0.210 1.210 11 H -0.203 1.203 12 N -0.356 5.356 13 C 0.287 3.713 14 O -0.476 6.476 15 C -0.116 4.116 16 H 0.130 0.870 17 C -0.143 4.143 18 C -0.101 4.101 19 C -0.151 4.151 20 C -0.165 4.165 21 C -0.083 4.083 22 C -0.144 4.144 23 C -0.144 4.144 24 H 0.059 0.941 25 H 0.084 0.916 26 H 0.029 0.971 27 H 0.074 0.926 28 H 0.237 0.763 29 H 0.066 0.934 30 H 0.116 0.884 31 H 0.104 0.896 32 H 0.094 0.906 33 H 0.053 0.947 34 H 0.081 0.919 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.254 -6.657 -15.556 18.410 hybrid contribution -0.121 0.012 1.378 1.383 sum 7.132 -6.645 -14.178 17.206 Atomic orbital electron populations 1.21885 0.98478 0.99369 0.99391 1.18288 0.90985 0.91738 0.82263 0.98852 1.21578 1.32265 1.13583 0.90827 0.90937 1.25834 0.94903 0.95574 1.02418 1.70069 1.37138 1.24045 1.24512 0.85277 0.78109 0.78513 0.78310 1.18280 1.21003 1.20344 1.46298 1.65373 1.14066 1.09845 1.21464 0.76951 0.87143 0.85731 1.90559 1.52769 1.18348 1.85914 1.21384 0.99371 0.99118 0.91681 0.86952 1.21616 0.92035 1.01528 0.99148 1.21040 0.98987 0.94322 0.95770 1.21548 0.96588 0.96545 1.00393 1.21714 0.95475 0.97834 1.01443 1.20768 0.98645 0.94706 0.94135 1.21542 0.97330 1.00008 0.95553 1.21529 0.96202 1.01609 0.95022 0.94083 0.91628 0.97106 0.92588 0.76270 0.93410 0.88362 0.89581 0.90629 0.94663 0.91930 0.93307 0.92853 0.90653 0.91130 0.90873 0.90165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.92 9.26 71.98 0.67 -6.25 16 2 C 0.27 14.44 2.56 44.24 0.11 14.56 16 3 H -0.01 -0.41 7.58 -2.39 -0.02 -0.43 16 4 C -0.54 -29.32 8.73 25.60 0.22 -29.10 16 5 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 6 C 0.01 0.68 5.30 84.66 0.45 1.13 16 7 N -0.92 -53.68 11.32 21.45 0.24 -53.44 16 8 Si 0.97 42.44 29.54 68.60 2.03 44.47 16 9 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 10 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 12 N -0.71 -30.14 4.81 -446.10 -2.15 -32.29 16 13 C 0.50 20.36 6.57 87.66 0.58 20.94 16 14 O -0.59 -29.63 13.32 -3.04 -0.04 -29.67 16 15 C -0.09 -2.67 2.56 -11.54 -0.03 -2.70 16 16 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 17 C -0.11 -2.50 5.21 30.59 0.16 -2.34 16 18 C -0.08 -1.70 3.19 -10.81 -0.03 -1.74 16 19 C -0.11 -2.89 5.71 30.59 0.17 -2.72 16 20 C -0.13 -3.84 5.39 30.62 0.16 -3.68 16 21 C -0.06 -1.72 2.37 -10.77 -0.03 -1.75 16 22 C -0.11 -1.97 5.71 30.59 0.17 -1.80 16 23 C -0.11 -1.68 5.70 30.58 0.17 -1.51 16 24 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 25 H 0.06 3.74 6.07 -2.39 -0.01 3.72 16 26 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 27 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 28 H 0.40 14.52 8.44 -92.71 -0.78 13.74 16 29 H 0.05 1.38 7.44 -2.38 -0.02 1.36 16 30 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.05 1.94 5.51 -2.39 -0.01 1.93 16 36 H 0.05 1.63 8.10 -2.39 -0.02 1.61 16 37 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -67.40 305.46 3.10 -64.30 By element: Atomic # 1 Polarization: 23.35 SS G_CDS: 0.23 Total: 23.58 kcal Atomic # 6 Polarization: -19.74 SS G_CDS: 2.79 Total: -16.95 kcal Atomic # 7 Polarization: -83.83 SS G_CDS: -1.90 Total: -85.73 kcal Atomic # 8 Polarization: -29.63 SS G_CDS: -0.04 Total: -29.67 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -67.40 3.10 -64.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335144075.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.383 kcal (2) G-P(sol) polarization free energy of solvation -67.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds