Wall clock time and date at job start Sun Mar 29 2020 23:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.46917 * 2 1 4 4 C 1.50699 * 109.46930 * 240.00179 * 2 1 3 5 5 H 1.07998 * 119.99747 * 239.99723 * 4 2 1 6 6 C 1.37875 * 120.00309 * 59.99966 * 4 2 1 7 7 N 1.31513 * 119.99740 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00043 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47177 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47165 * 119.99901 * 8 6 4 11 11 H 1.48506 * 109.46905 * 239.99682 * 8 6 4 12 12 N 1.46495 * 109.47112 * 120.00016 * 2 1 3 13 13 C 1.34781 * 119.99954 * 274.72138 * 12 2 1 14 14 O 1.21284 * 119.99987 * 0.28409 * 13 12 2 15 15 C 1.50703 * 119.99940 * 180.27395 * 13 12 2 16 16 H 1.09003 * 115.54752 * 57.80335 * 15 13 12 17 17 C 1.53041 * 117.50381 * 203.54349 * 15 13 12 18 18 C 1.52804 * 59.96279 * 107.47536 * 17 15 13 19 19 C 1.53156 * 117.75045 * 107.62879 * 18 17 15 20 20 C 1.53172 * 108.88826 * 199.61733 * 19 18 17 21 21 C 1.52945 * 109.45171 * 303.43916 * 20 19 18 22 22 C 1.52940 * 109.82127 * 62.98283 * 21 20 19 23 23 C 1.53146 * 117.75256 * 252.36736 * 18 17 15 24 24 H 1.09009 * 109.47038 * 299.99800 * 1 2 3 25 25 H 1.09001 * 109.47506 * 60.00071 * 1 2 3 26 26 H 1.09009 * 109.47359 * 180.02562 * 1 2 3 27 27 H 0.97004 * 120.00316 * 180.02562 * 7 6 4 28 28 H 0.96998 * 120.00352 * 95.00525 * 12 2 1 29 29 H 1.08997 * 117.49868 * 214.95944 * 17 15 13 30 30 H 1.08996 * 117.50015 * 359.97438 * 17 15 13 31 31 H 1.09001 * 109.56686 * 319.44021 * 19 18 17 32 32 H 1.08999 * 109.56629 * 79.79300 * 19 18 17 33 33 H 1.09005 * 109.47634 * 183.44527 * 20 19 18 34 34 H 1.09000 * 109.48048 * 63.43358 * 20 19 18 35 35 H 1.09001 * 109.41195 * 302.86847 * 21 20 19 36 36 H 1.08999 * 109.41320 * 183.08930 * 21 20 19 37 37 H 1.09003 * 109.47271 * 177.02196 * 22 21 20 38 38 H 1.08997 * 109.47716 * 57.01025 * 22 21 20 39 39 H 1.08998 * 109.56872 * 280.20516 * 23 18 17 40 40 H 1.09005 * 109.56694 * 40.43662 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3212 -1.1203 -4.0079 9 1 3.1463 -2.2870 -3.6038 10 1 1.1659 -1.5867 -4.8160 11 1 3.1464 -0.1873 -4.8165 12 7 2.0183 -0.6906 1.1961 13 6 2.1523 -0.0168 2.3557 14 8 1.8638 1.1599 2.4102 15 6 2.6605 -0.7258 3.5847 16 1 3.6416 -1.1908 3.4872 17 6 2.2909 -0.1328 4.9463 18 6 1.6318 -1.4270 4.4712 19 6 2.0519 -2.7329 5.1521 20 6 1.6784 -3.9083 4.2437 21 6 0.1803 -3.8605 3.9392 22 6 -0.1519 -2.5816 3.1690 23 6 0.1628 -1.3637 4.0430 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 0.7080 1.1609 -3.4844 28 1 2.2491 -1.6317 1.1526 29 1 3.0289 -0.2075 5.7448 30 1 1.6805 0.7702 4.9530 31 1 3.1292 -2.7279 5.3182 32 1 1.5341 -2.8300 6.1064 33 1 1.9174 -4.8459 4.7457 34 1 2.2408 -3.8410 3.3125 35 1 -0.3801 -3.8765 4.8740 36 1 -0.0950 -4.7272 3.3382 37 1 -1.2104 -2.5786 2.9090 38 1 0.4461 -2.5400 2.2587 39 1 -0.4757 -1.3734 4.9264 40 1 -0.0131 -0.4497 3.4756 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336329518.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:34:00 Heat of formation + Delta-G solvation = -45.363602 kcal Electronic energy + Delta-G solvation = -19418.088473 eV Core-core repulsion = 16618.099872 eV Total energy + Delta-G solvation = -2799.988601 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.03565 -37.79596 -35.02796 -34.26934 -32.29343 -30.83051 -29.01393 -27.42705 -25.24616 -23.85660 -22.70205 -21.00794 -20.68591 -19.53000 -18.44036 -16.93468 -15.86059 -15.56661 -15.13219 -14.52857 -14.31087 -13.99315 -13.71593 -13.33925 -13.04526 -12.74216 -12.42528 -12.18735 -12.08009 -11.66655 -11.52909 -11.17155 -11.04196 -11.02063 -10.95336 -10.68836 -10.59206 -10.31154 -10.21902 -10.07073 -9.76876 -9.53157 -9.01347 -8.87805 -8.52814 -7.83740 -6.10770 -4.19732 3.24105 3.29900 3.32294 3.35012 3.89941 4.15680 4.39608 4.73443 4.77980 4.91121 4.99381 5.19041 5.21480 5.27680 5.39217 5.46340 5.57366 5.67116 5.72834 5.87661 5.90298 5.95224 5.99603 6.09622 6.20868 6.24247 6.29962 6.36709 6.52715 6.56950 6.85994 7.00556 7.18749 7.51418 7.60913 7.72851 7.95315 8.17911 8.73696 8.82172 9.21290 9.48518 10.95245 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.026673 B = 0.006139 C = 0.005669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.518261 B = 4560.139725 C = 4937.992632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.264 3.736 3 H 0.047 0.953 4 C -0.532 4.532 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.900 3.100 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.703 5.703 13 C 0.533 3.467 14 O -0.557 6.557 15 C -0.178 4.178 16 H 0.118 0.882 17 C -0.146 4.146 18 C -0.100 4.100 19 C -0.079 4.079 20 C -0.118 4.118 21 C -0.117 4.117 22 C -0.119 4.119 23 C -0.085 4.085 24 H 0.013 0.987 25 H 0.088 0.912 26 H 0.026 0.974 27 H 0.263 0.737 28 H 0.388 0.612 29 H 0.096 0.904 30 H 0.103 0.897 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.394 -9.083 13.711 16.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.163 3.837 3 H 0.064 0.936 4 C -0.570 4.570 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.728 3.272 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.350 5.350 13 C 0.318 3.682 14 O -0.437 6.437 15 C -0.200 4.200 16 H 0.136 0.864 17 C -0.183 4.183 18 C -0.100 4.100 19 C -0.117 4.117 20 C -0.155 4.155 21 C -0.154 4.154 22 C -0.157 4.157 23 C -0.122 4.122 24 H 0.032 0.968 25 H 0.107 0.893 26 H 0.045 0.955 27 H 0.073 0.927 28 H 0.220 0.780 29 H 0.114 0.886 30 H 0.121 0.879 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.090 -8.115 13.553 15.797 hybrid contribution 0.532 -0.858 -0.980 1.407 sum 0.622 -8.974 12.573 15.459 Atomic orbital electron populations 1.22051 0.98465 0.99009 1.00725 1.18720 0.91013 0.93910 0.80092 0.93553 1.21268 1.32255 1.13132 0.90373 0.92091 1.24885 0.94844 0.94953 0.99037 1.69916 1.35976 1.22533 1.23711 0.86414 0.78608 0.79545 0.82659 1.19756 1.20877 1.20892 1.46464 1.64777 1.13305 1.10427 1.19451 0.78093 0.86765 0.83880 1.90643 1.51761 1.16163 1.85110 1.22487 1.00559 1.05078 0.91835 0.86390 1.22987 1.02914 0.97225 0.95200 1.21527 0.93863 0.93415 1.01226 1.21157 1.00364 0.92221 0.97930 1.21528 0.96635 0.97367 1.00004 1.21484 0.95996 0.97895 1.00040 1.21535 1.01377 0.93734 0.99005 1.21167 0.92583 0.99130 0.99344 0.96791 0.89296 0.95498 0.92671 0.78018 0.88586 0.87889 0.91872 0.91484 0.92252 0.91654 0.92416 0.92254 0.92087 0.91009 0.91766 0.91152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.60 9.26 37.16 0.34 -3.25 16 2 C 0.26 6.79 2.56 -69.09 -0.18 6.61 16 3 H 0.05 1.39 7.57 -51.93 -0.39 0.99 16 4 C -0.53 -14.21 8.73 -34.44 -0.30 -14.51 16 5 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -25.11 11.32 55.43 0.63 -24.48 16 8 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 9 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 N -0.70 -14.83 4.70 -54.93 -0.26 -15.09 16 13 C 0.53 10.91 5.86 -10.98 -0.06 10.85 16 14 O -0.56 -13.74 16.18 5.55 0.09 -13.65 16 15 C -0.18 -2.74 5.88 -91.83 -0.54 -3.28 16 16 H 0.12 1.60 8.14 -51.93 -0.42 1.18 16 17 C -0.15 -1.99 9.50 -26.81 -0.25 -2.24 16 18 C -0.10 -1.29 1.97 -154.54 -0.30 -1.59 16 19 C -0.08 -0.82 5.67 -26.56 -0.15 -0.97 16 20 C -0.12 -1.20 5.93 -26.67 -0.16 -1.36 16 21 C -0.12 -1.25 5.82 -26.79 -0.16 -1.41 16 22 C -0.12 -1.58 5.93 -26.67 -0.16 -1.74 16 23 C -0.08 -1.18 5.28 -26.56 -0.14 -1.32 16 24 H 0.01 0.32 8.14 -51.92 -0.42 -0.10 16 25 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 26 H 0.03 0.62 8.14 -51.92 -0.42 0.20 16 27 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 28 H 0.39 7.26 8.23 -40.82 -0.34 6.93 16 29 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.10 1.58 7.87 -51.93 -0.41 1.17 16 31 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.07 1.08 7.45 -51.93 -0.39 0.70 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.07 1.21 6.94 -51.93 -0.36 0.85 16 LS Contribution 318.61 15.07 4.80 4.80 Total: -1.00 -30.02 318.61 -8.73 -38.74 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -6.81 Total: 6.43 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: -2.16 Total: -12.51 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: 0.37 Total: -39.58 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: 0.09 Total: -13.65 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.02 -8.73 -38.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336329518.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.620 kcal (2) G-P(sol) polarization free energy of solvation -30.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds