Wall clock time and date at job start Sun Mar 29 2020 23:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.46917 * 2 1 4 4 C 1.50699 * 109.46930 * 240.00179 * 2 1 3 5 5 H 1.07998 * 119.99747 * 239.99723 * 4 2 1 6 6 C 1.37875 * 120.00309 * 59.99966 * 4 2 1 7 7 N 1.31513 * 119.99740 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00043 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47177 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47165 * 119.99901 * 8 6 4 11 11 H 1.48506 * 109.46905 * 239.99682 * 8 6 4 12 12 N 1.46495 * 109.47112 * 120.00016 * 2 1 3 13 13 C 1.34781 * 119.99954 * 274.72138 * 12 2 1 14 14 O 1.21284 * 119.99987 * 0.28409 * 13 12 2 15 15 C 1.50703 * 119.99940 * 180.27395 * 13 12 2 16 16 H 1.09003 * 115.54752 * 57.80335 * 15 13 12 17 17 C 1.53041 * 117.50381 * 203.54349 * 15 13 12 18 18 C 1.52804 * 59.96279 * 107.47536 * 17 15 13 19 19 C 1.53156 * 117.75045 * 107.62879 * 18 17 15 20 20 C 1.53172 * 108.88826 * 199.61733 * 19 18 17 21 21 C 1.52945 * 109.45171 * 303.43916 * 20 19 18 22 22 C 1.52940 * 109.82127 * 62.98283 * 21 20 19 23 23 C 1.53146 * 117.75256 * 252.36736 * 18 17 15 24 24 H 1.09009 * 109.47038 * 299.99800 * 1 2 3 25 25 H 1.09001 * 109.47506 * 60.00071 * 1 2 3 26 26 H 1.09009 * 109.47359 * 180.02562 * 1 2 3 27 27 H 0.97004 * 120.00316 * 180.02562 * 7 6 4 28 28 H 0.96998 * 120.00352 * 95.00525 * 12 2 1 29 29 H 1.08997 * 117.49868 * 214.95944 * 17 15 13 30 30 H 1.08996 * 117.50015 * 359.97438 * 17 15 13 31 31 H 1.09001 * 109.56686 * 319.44021 * 19 18 17 32 32 H 1.08999 * 109.56629 * 79.79300 * 19 18 17 33 33 H 1.09005 * 109.47634 * 183.44527 * 20 19 18 34 34 H 1.09000 * 109.48048 * 63.43358 * 20 19 18 35 35 H 1.09001 * 109.41195 * 302.86847 * 21 20 19 36 36 H 1.08999 * 109.41320 * 183.08930 * 21 20 19 37 37 H 1.09003 * 109.47271 * 177.02196 * 22 21 20 38 38 H 1.08997 * 109.47716 * 57.01025 * 22 21 20 39 39 H 1.08998 * 109.56872 * 280.20516 * 23 18 17 40 40 H 1.09005 * 109.56694 * 40.43662 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3212 -1.1203 -4.0079 9 1 3.1463 -2.2870 -3.6038 10 1 1.1659 -1.5867 -4.8160 11 1 3.1464 -0.1873 -4.8165 12 7 2.0183 -0.6906 1.1961 13 6 2.1523 -0.0168 2.3557 14 8 1.8638 1.1599 2.4102 15 6 2.6605 -0.7258 3.5847 16 1 3.6416 -1.1908 3.4872 17 6 2.2909 -0.1328 4.9463 18 6 1.6318 -1.4270 4.4712 19 6 2.0519 -2.7329 5.1521 20 6 1.6784 -3.9083 4.2437 21 6 0.1803 -3.8605 3.9392 22 6 -0.1519 -2.5816 3.1690 23 6 0.1628 -1.3637 4.0430 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 0.7080 1.1609 -3.4844 28 1 2.2491 -1.6317 1.1526 29 1 3.0289 -0.2075 5.7448 30 1 1.6805 0.7702 4.9530 31 1 3.1292 -2.7279 5.3182 32 1 1.5341 -2.8300 6.1064 33 1 1.9174 -4.8459 4.7457 34 1 2.2408 -3.8410 3.3125 35 1 -0.3801 -3.8765 4.8740 36 1 -0.0950 -4.7272 3.3382 37 1 -1.2104 -2.5786 2.9090 38 1 0.4461 -2.5400 2.2587 39 1 -0.4757 -1.3734 4.9264 40 1 -0.0131 -0.4497 3.4756 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336329518.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:33:59 Heat of formation + Delta-G solvation = -63.108679 kcal Electronic energy + Delta-G solvation = -19418.857958 eV Core-core repulsion = 16618.099872 eV Total energy + Delta-G solvation = -2800.758085 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.37365 -39.24596 -36.79362 -35.53900 -34.28998 -31.77723 -30.97360 -28.46709 -27.37230 -25.33627 -23.65420 -22.48703 -21.94865 -21.15175 -19.75036 -18.58287 -17.57310 -17.17605 -16.62232 -16.11286 -15.59417 -15.25602 -14.99853 -14.68202 -14.45615 -14.29938 -13.76632 -13.65528 -13.37301 -13.12422 -13.03025 -12.88842 -12.77509 -12.56365 -12.30260 -12.15281 -12.02184 -11.95344 -11.55393 -11.10893 -11.08397 -10.90805 -10.71880 -10.61600 -10.38331 -9.72853 -8.19434 -6.37255 1.42624 1.43336 1.55785 1.75842 2.33488 2.57068 2.83857 3.10868 3.65764 3.74425 3.86054 3.95420 4.15942 4.25222 4.36938 4.47477 4.49365 4.62785 4.71760 4.79780 4.84905 4.89341 4.91892 5.01720 5.07041 5.09822 5.14707 5.20207 5.33252 5.35489 5.41865 5.42724 5.53567 5.60447 5.62513 5.67498 5.89752 6.08441 6.71181 6.98569 7.30848 7.57745 8.87288 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.026673 B = 0.006139 C = 0.005669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.518261 B = 4560.139725 C = 4937.992632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.272 3.728 3 H -0.007 1.007 4 C -0.546 4.546 5 H 0.072 0.928 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.973 3.027 9 H -0.259 1.259 10 H -0.277 1.277 11 H -0.283 1.283 12 N -0.697 5.697 13 C 0.530 3.470 14 O -0.608 6.608 15 C -0.193 4.193 16 H 0.144 0.856 17 C -0.141 4.141 18 C -0.079 4.079 19 C -0.074 4.074 20 C -0.118 4.118 21 C -0.112 4.112 22 C -0.119 4.119 23 C -0.087 4.087 24 H 0.006 0.994 25 H 0.065 0.935 26 H 0.039 0.961 27 H 0.265 0.735 28 H 0.402 0.598 29 H 0.131 0.869 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.055 0.945 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.055 0.945 38 H 0.048 0.952 39 H 0.083 0.917 40 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.497 -12.099 15.125 19.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.169 3.831 3 H 0.011 0.989 4 C -0.584 4.584 5 H 0.091 0.909 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.797 3.203 9 H -0.183 1.183 10 H -0.203 1.203 11 H -0.209 1.209 12 N -0.344 5.344 13 C 0.318 3.682 14 O -0.491 6.491 15 C -0.214 4.214 16 H 0.162 0.838 17 C -0.179 4.179 18 C -0.080 4.080 19 C -0.111 4.111 20 C -0.156 4.156 21 C -0.149 4.149 22 C -0.157 4.157 23 C -0.124 4.124 24 H 0.026 0.974 25 H 0.084 0.916 26 H 0.058 0.942 27 H 0.075 0.925 28 H 0.236 0.764 29 H 0.150 0.850 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.101 0.899 40 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 1.205 -11.170 14.991 18.734 hybrid contribution 0.131 0.157 -1.394 1.409 sum 1.336 -11.014 13.597 17.549 Atomic orbital electron populations 1.21831 0.98280 0.99239 0.99157 1.18307 0.91094 0.91653 0.82092 0.98906 1.21571 1.32522 1.13488 0.90814 0.90944 1.25821 0.94841 0.95567 1.02382 1.70067 1.37047 1.24032 1.24570 0.85282 0.78142 0.78530 0.78300 1.18302 1.20293 1.20917 1.46210 1.64789 1.13791 1.09639 1.20349 0.76669 0.86271 0.84923 1.90611 1.53820 1.18674 1.85962 1.22434 1.02401 1.06713 0.89825 0.83795 1.23095 1.03307 0.96702 0.94764 1.21663 0.92265 0.94830 0.99227 1.21221 1.01770 0.89877 0.98212 1.21555 0.95676 0.98470 0.99853 1.21462 0.96993 0.96164 1.00301 1.21525 1.00679 0.95086 0.98411 1.21159 0.94167 0.97454 0.99635 0.97441 0.91643 0.94151 0.92532 0.76358 0.85045 0.90430 0.90050 0.89525 0.89824 0.92660 0.90926 0.91630 0.92627 0.93304 0.89891 0.95571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.63 9.26 71.98 0.67 -5.96 16 2 C 0.27 14.61 2.56 44.24 0.11 14.72 16 3 H -0.01 -0.44 7.57 -2.39 -0.02 -0.46 16 4 C -0.55 -29.56 8.73 25.60 0.22 -29.34 16 5 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 6 C 0.01 0.75 5.30 84.65 0.45 1.20 16 7 N -0.92 -53.74 11.32 21.45 0.24 -53.49 16 8 Si 0.97 42.53 29.54 68.60 2.03 44.56 16 9 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 10 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 11 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 12 N -0.70 -30.27 4.70 -446.10 -2.10 -32.37 16 13 C 0.53 22.40 5.86 87.66 0.51 22.92 16 14 O -0.61 -31.78 16.18 -3.04 -0.05 -31.83 16 15 C -0.19 -5.70 5.88 -11.58 -0.07 -5.76 16 16 H 0.14 3.52 8.14 -2.39 -0.02 3.50 16 17 C -0.14 -3.61 9.50 30.54 0.29 -3.32 16 18 C -0.08 -1.88 1.97 -52.20 -0.10 -1.98 16 19 C -0.07 -1.19 5.67 30.70 0.17 -1.01 16 20 C -0.12 -1.93 5.93 30.63 0.18 -1.75 16 21 C -0.11 -2.07 5.82 30.56 0.18 -1.89 16 22 C -0.12 -3.07 5.93 30.63 0.18 -2.89 16 23 C -0.09 -2.37 5.28 30.70 0.16 -2.21 16 24 H 0.01 0.35 8.14 -2.38 -0.02 0.33 16 25 H 0.06 3.74 6.07 -2.39 -0.01 3.73 16 26 H 0.04 1.94 8.14 -2.38 -0.02 1.92 16 27 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 28 H 0.40 15.09 8.23 -92.71 -0.76 14.33 16 29 H 0.13 2.43 8.14 -2.39 -0.02 2.41 16 30 H 0.08 2.41 7.87 -2.39 -0.02 2.39 16 31 H 0.08 1.09 8.09 -2.39 -0.02 1.07 16 32 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 34 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.07 1.15 8.14 -2.39 -0.02 1.14 16 36 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.05 1.46 7.45 -2.39 -0.02 1.45 16 39 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.03 0.93 6.94 -2.38 -0.02 0.92 16 Total: -1.00 -68.62 318.61 3.33 -65.29 By element: Atomic # 1 Polarization: 24.86 SS G_CDS: 0.25 Total: 25.10 kcal Atomic # 6 Polarization: -20.23 SS G_CDS: 2.96 Total: -17.27 kcal Atomic # 7 Polarization: -84.00 SS G_CDS: -1.85 Total: -85.86 kcal Atomic # 8 Polarization: -31.78 SS G_CDS: -0.05 Total: -31.83 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -68.62 3.33 -65.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336329518.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.183 kcal (2) G-P(sol) polarization free energy of solvation -68.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds