Wall clock time and date at job start Sun Mar 29 2020 23:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08992 * 109.47377 * 2 1 4 4 C 1.50707 * 109.46792 * 119.99857 * 2 1 3 5 5 H 1.08000 * 119.99745 * 119.99985 * 4 2 1 6 6 C 1.37881 * 120.00103 * 299.99854 * 4 2 1 7 7 N 1.31503 * 119.99868 * 179.97438 * 6 4 2 8 8 Si 1.86803 * 119.99587 * 359.72486 * 6 4 2 9 9 H 1.48497 * 109.47028 * 90.00255 * 8 6 4 10 10 H 1.48500 * 109.46899 * 209.99726 * 8 6 4 11 11 H 1.48497 * 109.47522 * 330.00091 * 8 6 4 12 12 N 1.46497 * 109.47148 * 239.99477 * 2 1 3 13 13 C 1.34777 * 120.00054 * 85.00362 * 12 2 1 14 14 O 1.21284 * 119.99887 * 359.97438 * 13 12 2 15 15 C 1.50697 * 120.00462 * 179.97438 * 13 12 2 16 16 H 1.09001 * 115.55284 * 57.77695 * 15 13 12 17 17 C 1.53030 * 117.50624 * 203.52642 * 15 13 12 18 18 C 1.52809 * 59.96536 * 107.47136 * 17 15 13 19 19 C 1.53159 * 117.74867 * 107.62660 * 18 17 15 20 20 C 1.53179 * 108.88600 * 199.61959 * 19 18 17 21 21 C 1.52938 * 109.45495 * 303.44050 * 20 19 18 22 22 C 1.52953 * 109.82148 * 62.98053 * 21 20 19 23 23 C 1.53149 * 117.75303 * 252.36888 * 18 17 15 24 24 H 1.09006 * 109.47625 * 300.00236 * 1 2 3 25 25 H 1.09007 * 109.47291 * 59.99717 * 1 2 3 26 26 H 1.08998 * 109.47978 * 180.02562 * 1 2 3 27 27 H 0.97001 * 119.99811 * 179.97438 * 7 6 4 28 28 H 0.97001 * 120.00035 * 265.00332 * 12 2 1 29 29 H 1.09000 * 117.50395 * 214.94883 * 17 15 13 30 30 H 1.08999 * 117.50681 * 359.97438 * 17 15 13 31 31 H 1.08995 * 109.56834 * 319.44560 * 19 18 17 32 32 H 1.09002 * 109.56286 * 79.80475 * 19 18 17 33 33 H 1.08997 * 109.47583 * 183.44560 * 20 19 18 34 34 H 1.08996 * 109.47306 * 63.43664 * 20 19 18 35 35 H 1.08994 * 109.41424 * 302.87513 * 21 20 19 36 36 H 1.08997 * 109.41555 * 183.09073 * 21 20 19 37 37 H 1.08995 * 109.47205 * 177.01992 * 22 21 20 38 38 H 1.09004 * 109.47424 * 57.00655 * 22 21 20 39 39 H 1.08994 * 109.56959 * 280.19694 * 23 18 17 40 40 H 1.08995 * 109.56695 * 40.43461 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2306 5 1 2.6531 -1.5885 1.1315 6 6 1.6991 -0.2393 2.4828 7 7 2.1370 -0.8595 3.5566 8 14 0.6316 1.2840 2.6541 9 1 -0.7980 0.8844 2.6966 10 1 0.9838 1.9968 3.9083 11 1 0.8602 2.1818 1.4935 12 7 2.0183 -0.6907 -1.1961 13 6 2.1471 -0.0184 -2.3571 14 8 1.8582 1.1582 -2.4118 15 6 2.6499 -0.7287 -3.5874 16 1 2.0688 -1.5963 -3.9000 17 6 3.2921 0.1247 -4.6833 18 6 4.1618 -0.7756 -3.8069 19 6 4.7493 -2.0385 -4.4439 20 6 5.1471 -3.0151 -3.3329 21 6 6.1256 -2.3295 -2.3782 22 6 5.4421 -1.1409 -1.7003 23 6 5.0540 -0.1040 -2.7589 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3635 -1.0276 0.0005 27 1 1.9030 -0.5279 4.4376 28 1 2.2489 -1.6319 -1.1524 29 1 3.1333 -0.1811 -5.7174 30 1 3.3505 1.2000 -4.5147 31 1 4.0033 -2.5031 -5.0886 32 1 5.6291 -1.7756 -5.0311 33 1 5.6225 -3.8918 -3.7727 34 1 4.2574 -3.3217 -2.7829 35 1 6.9920 -1.9779 -2.9384 36 1 6.4507 -3.0414 -1.6196 37 1 6.1267 -0.6889 -0.9827 38 1 4.5466 -1.4839 -1.1820 39 1 5.9533 0.2823 -3.2386 40 1 4.5108 0.7153 -2.2880 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336329521.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:34:05 Heat of formation + Delta-G solvation = -37.131051 kcal Electronic energy + Delta-G solvation = -19458.361621 eV Core-core repulsion = 16658.730011 eV Total energy + Delta-G solvation = -2799.631611 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.11643 -37.94579 -35.17935 -34.34972 -32.32625 -30.82201 -29.88581 -27.48607 -25.20429 -24.01335 -22.67601 -20.98364 -20.76462 -19.65286 -18.53816 -17.07926 -16.03458 -15.60580 -15.45333 -14.62760 -14.34504 -14.01210 -13.69993 -13.37882 -13.11316 -12.80581 -12.75195 -12.26388 -12.18391 -12.14964 -11.80826 -11.53129 -11.25872 -11.04408 -11.00329 -10.80335 -10.55434 -10.16836 -10.05693 -9.87036 -9.66512 -9.53787 -9.20504 -9.00595 -8.73710 -8.09190 -6.19559 -4.21488 3.15982 3.24363 3.36156 3.41192 3.78535 4.06463 4.33009 4.70235 4.76770 4.89703 4.97161 5.15560 5.19638 5.26216 5.40635 5.48041 5.56562 5.60506 5.72284 5.86160 5.89087 5.92444 6.01023 6.12794 6.20431 6.26313 6.30017 6.33677 6.40407 6.42659 6.53694 6.59046 6.65637 6.88542 7.22834 7.33913 7.55434 8.19352 8.58162 8.78489 9.01499 9.42067 10.92595 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.026091 B = 0.006910 C = 0.005973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.892366 B = 4051.318692 C = 4686.989248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.237 3.763 3 H 0.047 0.953 4 C -0.532 4.532 5 H 0.080 0.920 6 C 0.078 3.922 7 N -0.893 5.893 8 Si 0.884 3.116 9 H -0.277 1.277 10 H -0.294 1.294 11 H -0.262 1.262 12 N -0.696 5.696 13 C 0.536 3.464 14 O -0.558 6.558 15 C -0.180 4.180 16 H 0.120 0.880 17 C -0.146 4.146 18 C -0.097 4.097 19 C -0.079 4.079 20 C -0.118 4.118 21 C -0.117 4.117 22 C -0.120 4.120 23 C -0.085 4.085 24 H 0.046 0.954 25 H 0.035 0.965 26 H 0.052 0.948 27 H 0.267 0.733 28 H 0.394 0.606 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.367 -3.433 -14.645 15.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.133 3.867 3 H 0.065 0.935 4 C -0.570 4.570 5 H 0.098 0.902 6 C -0.125 4.125 7 N -0.530 5.530 8 Si 0.714 3.286 9 H -0.204 1.204 10 H -0.222 1.222 11 H -0.187 1.187 12 N -0.343 5.343 13 C 0.321 3.679 14 O -0.438 6.438 15 C -0.201 4.201 16 H 0.138 0.862 17 C -0.183 4.183 18 C -0.098 4.098 19 C -0.117 4.117 20 C -0.155 4.155 21 C -0.154 4.154 22 C -0.157 4.157 23 C -0.123 4.123 24 H 0.065 0.935 25 H 0.054 0.946 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.228 0.772 29 H 0.115 0.885 30 H 0.121 0.879 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.161 -2.599 -14.433 15.547 hybrid contribution -0.681 0.231 0.325 0.789 sum 4.480 -2.368 -14.109 14.991 Atomic orbital electron populations 1.22456 0.99463 1.00802 0.99252 1.19083 0.90027 0.94634 0.82938 0.93529 1.21032 1.33108 1.14338 0.88480 0.90180 1.24819 0.95486 0.96638 0.95560 1.69864 1.44964 1.40136 0.98011 0.86899 0.80535 0.83784 0.77401 1.20361 1.22184 1.18705 1.46139 1.64832 1.13787 1.09534 1.19511 0.77715 0.86773 0.83900 1.90639 1.51724 1.16217 1.85198 1.22440 0.96878 1.03075 0.97682 0.86226 1.22999 1.01800 0.98597 0.94903 1.21562 0.89966 0.98215 1.00061 1.21164 1.00200 0.93298 0.97005 1.21528 0.99741 0.97442 0.96819 1.21484 0.97965 0.97618 0.98371 1.21540 1.01402 0.95485 0.97307 1.21181 0.98407 0.97794 0.94891 0.93514 0.94604 0.92855 0.92343 0.77222 0.88504 0.87883 0.91903 0.91429 0.92237 0.91648 0.92480 0.92114 0.91877 0.90735 0.91707 0.91265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.68 8.97 37.15 0.33 -3.35 16 2 C 0.24 5.69 2.15 -69.08 -0.15 5.54 16 3 H 0.05 1.24 6.62 -51.93 -0.34 0.90 16 4 C -0.53 -14.31 9.31 -34.44 -0.32 -14.64 16 5 H 0.08 2.26 7.98 -52.49 -0.42 1.84 16 6 C 0.08 2.20 5.45 -17.82 -0.10 2.11 16 7 N -0.89 -26.41 13.96 55.43 0.77 -25.63 16 8 Si 0.88 21.96 24.38 -169.99 -4.15 17.81 16 9 H -0.28 -6.67 6.86 56.52 0.39 -6.28 16 10 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 11 H -0.26 -6.51 6.53 56.52 0.37 -6.15 16 12 N -0.70 -13.96 4.70 -54.94 -0.26 -14.22 16 13 C 0.54 10.34 5.86 -10.99 -0.06 10.27 16 14 O -0.56 -12.90 16.19 5.55 0.09 -12.81 16 15 C -0.18 -2.61 5.88 -91.84 -0.54 -3.15 16 16 H 0.12 1.50 8.14 -51.93 -0.42 1.08 16 17 C -0.15 -1.89 9.50 -26.81 -0.25 -2.15 16 18 C -0.10 -1.24 1.97 -154.53 -0.31 -1.54 16 19 C -0.08 -0.81 5.67 -26.56 -0.15 -0.96 16 20 C -0.12 -1.23 5.93 -26.67 -0.16 -1.39 16 21 C -0.12 -1.34 5.82 -26.79 -0.16 -1.49 16 22 C -0.12 -1.69 5.93 -26.66 -0.16 -1.85 16 23 C -0.09 -1.21 5.28 -26.56 -0.14 -1.35 16 24 H 0.05 1.10 3.29 -51.93 -0.17 0.93 16 25 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 28 H 0.39 7.13 8.23 -40.82 -0.34 6.79 16 29 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.10 1.51 7.87 -51.93 -0.41 1.10 16 31 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.07 1.21 7.45 -51.93 -0.39 0.82 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 1.19 6.94 -51.93 -0.36 0.83 16 LS Contribution 311.81 15.07 4.70 4.70 Total: -1.00 -30.57 311.81 -7.68 -38.25 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -6.68 Total: 5.84 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: -2.16 Total: -13.94 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: 0.52 Total: -39.85 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: 0.09 Total: -12.81 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.15 Total: 17.81 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.57 -7.68 -38.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336329521.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.123 kcal (2) G-P(sol) polarization free energy of solvation -30.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds