Wall clock time and date at job start Sun Mar 29 2020 23:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08992 * 109.47377 * 2 1 4 4 C 1.50707 * 109.46792 * 119.99857 * 2 1 3 5 5 H 1.08000 * 119.99745 * 119.99985 * 4 2 1 6 6 C 1.37881 * 120.00103 * 299.99854 * 4 2 1 7 7 N 1.31503 * 119.99868 * 179.97438 * 6 4 2 8 8 Si 1.86803 * 119.99587 * 359.72486 * 6 4 2 9 9 H 1.48497 * 109.47028 * 90.00255 * 8 6 4 10 10 H 1.48500 * 109.46899 * 209.99726 * 8 6 4 11 11 H 1.48497 * 109.47522 * 330.00091 * 8 6 4 12 12 N 1.46497 * 109.47148 * 239.99477 * 2 1 3 13 13 C 1.34777 * 120.00054 * 85.00362 * 12 2 1 14 14 O 1.21284 * 119.99887 * 359.97438 * 13 12 2 15 15 C 1.50697 * 120.00462 * 179.97438 * 13 12 2 16 16 H 1.09001 * 115.55284 * 57.77695 * 15 13 12 17 17 C 1.53030 * 117.50624 * 203.52642 * 15 13 12 18 18 C 1.52809 * 59.96536 * 107.47136 * 17 15 13 19 19 C 1.53159 * 117.74867 * 107.62660 * 18 17 15 20 20 C 1.53179 * 108.88600 * 199.61959 * 19 18 17 21 21 C 1.52938 * 109.45495 * 303.44050 * 20 19 18 22 22 C 1.52953 * 109.82148 * 62.98053 * 21 20 19 23 23 C 1.53149 * 117.75303 * 252.36888 * 18 17 15 24 24 H 1.09006 * 109.47625 * 300.00236 * 1 2 3 25 25 H 1.09007 * 109.47291 * 59.99717 * 1 2 3 26 26 H 1.08998 * 109.47978 * 180.02562 * 1 2 3 27 27 H 0.97001 * 119.99811 * 179.97438 * 7 6 4 28 28 H 0.97001 * 120.00035 * 265.00332 * 12 2 1 29 29 H 1.09000 * 117.50395 * 214.94883 * 17 15 13 30 30 H 1.08999 * 117.50681 * 359.97438 * 17 15 13 31 31 H 1.08995 * 109.56834 * 319.44560 * 19 18 17 32 32 H 1.09002 * 109.56286 * 79.80475 * 19 18 17 33 33 H 1.08997 * 109.47583 * 183.44560 * 20 19 18 34 34 H 1.08996 * 109.47306 * 63.43664 * 20 19 18 35 35 H 1.08994 * 109.41424 * 302.87513 * 21 20 19 36 36 H 1.08997 * 109.41555 * 183.09073 * 21 20 19 37 37 H 1.08995 * 109.47205 * 177.01992 * 22 21 20 38 38 H 1.09004 * 109.47424 * 57.00655 * 22 21 20 39 39 H 1.08994 * 109.56959 * 280.19694 * 23 18 17 40 40 H 1.08995 * 109.56695 * 40.43461 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2306 5 1 2.6531 -1.5885 1.1315 6 6 1.6991 -0.2393 2.4828 7 7 2.1370 -0.8595 3.5566 8 14 0.6316 1.2840 2.6541 9 1 -0.7980 0.8844 2.6966 10 1 0.9838 1.9968 3.9083 11 1 0.8602 2.1818 1.4935 12 7 2.0183 -0.6907 -1.1961 13 6 2.1471 -0.0184 -2.3571 14 8 1.8582 1.1582 -2.4118 15 6 2.6499 -0.7287 -3.5874 16 1 2.0688 -1.5963 -3.9000 17 6 3.2921 0.1247 -4.6833 18 6 4.1618 -0.7756 -3.8069 19 6 4.7493 -2.0385 -4.4439 20 6 5.1471 -3.0151 -3.3329 21 6 6.1256 -2.3295 -2.3782 22 6 5.4421 -1.1409 -1.7003 23 6 5.0540 -0.1040 -2.7589 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3635 -1.0276 0.0005 27 1 1.9030 -0.5279 4.4376 28 1 2.2489 -1.6319 -1.1524 29 1 3.1333 -0.1811 -5.7174 30 1 3.3505 1.2000 -4.5147 31 1 4.0033 -2.5031 -5.0886 32 1 5.6291 -1.7756 -5.0311 33 1 5.6225 -3.8918 -3.7727 34 1 4.2574 -3.3217 -2.7829 35 1 6.9920 -1.9779 -2.9384 36 1 6.4507 -3.0414 -1.6196 37 1 6.1267 -0.6889 -0.9827 38 1 4.5466 -1.4839 -1.1820 39 1 5.9533 0.2823 -3.2386 40 1 4.5108 0.7153 -2.2880 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336329521.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:34:05 Heat of formation + Delta-G solvation = -56.513523 kcal Electronic energy + Delta-G solvation = -19459.202108 eV Core-core repulsion = 16658.730011 eV Total energy + Delta-G solvation = -2800.472098 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.41592 -39.32852 -36.90783 -35.55493 -34.38267 -31.92205 -31.62610 -28.51483 -27.25439 -25.43871 -23.66293 -22.47442 -21.95790 -21.22252 -19.81158 -18.77968 -17.75913 -17.32891 -16.70558 -16.23785 -15.58663 -15.28751 -15.06723 -14.91568 -14.65997 -14.20878 -14.16343 -13.94008 -13.61286 -13.36424 -13.18694 -13.10689 -12.83323 -12.56799 -12.17013 -12.04981 -11.96530 -11.67384 -11.56863 -11.29924 -11.08972 -10.92137 -10.87765 -10.71287 -10.41688 -9.85590 -8.39550 -6.44653 1.23977 1.32436 1.41850 1.69251 2.23855 2.40006 2.81602 2.96804 3.63436 3.73298 3.84868 3.94255 4.10907 4.23050 4.33809 4.42759 4.47304 4.48143 4.55027 4.62011 4.68838 4.78283 4.83868 4.92331 4.97191 5.01607 5.07369 5.14227 5.19673 5.30399 5.32876 5.34563 5.40812 5.42403 5.52403 5.60994 5.66133 6.13013 6.56569 6.88213 7.18411 7.46232 8.75648 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.026091 B = 0.006910 C = 0.005973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.892366 B = 4051.318692 C = 4686.989248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.243 3.757 3 H 0.017 0.983 4 C -0.528 4.528 5 H 0.057 0.943 6 C 0.031 3.969 7 N -0.931 5.931 8 Si 0.936 3.064 9 H -0.259 1.259 10 H -0.291 1.291 11 H -0.267 1.267 12 N -0.693 5.693 13 C 0.534 3.466 14 O -0.601 6.601 15 C -0.192 4.192 16 H 0.149 0.851 17 C -0.136 4.136 18 C -0.085 4.085 19 C -0.072 4.072 20 C -0.118 4.118 21 C -0.112 4.112 22 C -0.121 4.121 23 C -0.086 4.086 24 H 0.041 0.959 25 H 0.043 0.957 26 H 0.066 0.934 27 H 0.270 0.730 28 H 0.404 0.596 29 H 0.133 0.867 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.054 0.946 35 H 0.073 0.927 36 H 0.059 0.941 37 H 0.049 0.951 38 H 0.046 0.954 39 H 0.083 0.917 40 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.405 -4.439 -17.182 18.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.138 3.862 3 H 0.035 0.965 4 C -0.566 4.566 5 H 0.075 0.925 6 C -0.169 4.169 7 N -0.570 5.570 8 Si 0.763 3.237 9 H -0.184 1.184 10 H -0.218 1.218 11 H -0.192 1.192 12 N -0.341 5.341 13 C 0.322 3.678 14 O -0.483 6.483 15 C -0.213 4.213 16 H 0.166 0.834 17 C -0.174 4.174 18 C -0.085 4.085 19 C -0.109 4.109 20 C -0.155 4.155 21 C -0.150 4.150 22 C -0.158 4.158 23 C -0.123 4.123 24 H 0.059 0.941 25 H 0.062 0.938 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.239 0.761 29 H 0.151 0.849 30 H 0.098 0.902 31 H 0.103 0.897 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.102 0.898 40 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 5.200 -3.633 -16.987 18.133 hybrid contribution -0.599 0.552 1.125 1.389 sum 4.601 -3.081 -15.862 16.801 Atomic orbital electron populations 1.22348 0.97953 1.01703 0.99331 1.18730 0.91098 0.92944 0.83457 0.96547 1.21206 1.32203 1.13474 0.89756 0.92465 1.25506 0.96800 0.99164 0.95395 1.69964 1.46621 1.41854 0.98596 0.86056 0.79960 0.80577 0.77079 1.18449 1.21809 1.19203 1.45982 1.65014 1.14169 1.08959 1.20322 0.76369 0.86328 0.84744 1.90610 1.53445 1.18289 1.85983 1.22445 0.98688 1.04221 0.95915 0.83370 1.23103 1.00697 0.97306 0.96250 1.21662 0.88345 0.99345 0.99189 1.21212 1.01370 0.91427 0.96936 1.21548 0.99103 0.98266 0.96597 1.21460 0.98580 0.96249 0.98697 1.21518 1.00205 0.96827 0.97292 1.21147 0.99094 0.96688 0.95377 0.94092 0.93782 0.91509 0.92061 0.76055 0.84867 0.90184 0.89718 0.89548 0.89832 0.92749 0.90818 0.92189 0.93244 0.93503 0.89849 0.95408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.98 8.97 71.98 0.65 -6.34 16 2 C 0.24 11.88 2.15 44.25 0.10 11.98 16 3 H 0.02 0.92 6.62 -2.39 -0.02 0.90 16 4 C -0.53 -29.21 9.31 25.60 0.24 -28.97 16 5 H 0.06 3.36 7.98 -2.91 -0.02 3.33 16 6 C 0.03 1.78 5.45 84.66 0.46 2.24 16 7 N -0.93 -56.17 13.96 21.45 0.30 -55.87 16 8 Si 0.94 45.62 24.38 68.60 1.67 47.29 16 9 H -0.26 -11.83 6.86 99.48 0.68 -11.14 16 10 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 11 H -0.27 -13.14 6.53 99.48 0.65 -12.49 16 12 N -0.69 -28.26 4.70 -446.11 -2.10 -30.36 16 13 C 0.53 20.72 5.86 87.66 0.51 21.23 16 14 O -0.60 -28.40 16.19 -3.04 -0.05 -28.45 16 15 C -0.19 -5.22 5.88 -11.58 -0.07 -5.29 16 16 H 0.15 3.21 8.14 -2.39 -0.02 3.19 16 17 C -0.14 -3.20 9.50 30.54 0.29 -2.91 16 18 C -0.08 -1.96 1.97 -52.20 -0.10 -2.06 16 19 C -0.07 -1.16 5.67 30.71 0.17 -0.98 16 20 C -0.12 -2.06 5.93 30.63 0.18 -1.88 16 21 C -0.11 -2.35 5.82 30.56 0.18 -2.18 16 22 C -0.12 -3.44 5.93 30.64 0.18 -3.26 16 23 C -0.09 -2.39 5.28 30.70 0.16 -2.23 16 24 H 0.04 1.87 3.29 -2.38 -0.01 1.87 16 25 H 0.04 1.88 8.14 -2.38 -0.02 1.86 16 26 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 27 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 28 H 0.40 14.80 8.23 -92.71 -0.76 14.04 16 29 H 0.13 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.08 2.28 7.87 -2.39 -0.02 2.26 16 31 H 0.08 1.07 8.09 -2.39 -0.02 1.05 16 32 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.05 1.57 7.45 -2.38 -0.02 1.56 16 39 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.03 0.99 6.94 -2.39 -0.02 0.97 16 Total: -1.00 -68.06 311.81 2.95 -65.11 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: 0.17 Total: 22.90 kcal Atomic # 6 Polarization: -23.58 SS G_CDS: 2.95 Total: -20.63 kcal Atomic # 7 Polarization: -84.42 SS G_CDS: -1.80 Total: -86.22 kcal Atomic # 8 Polarization: -28.40 SS G_CDS: -0.05 Total: -28.45 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 1.67 Total: 47.29 kcal Total: -68.06 2.95 -65.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336329521.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.597 kcal (2) G-P(sol) polarization free energy of solvation -68.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds