Wall clock time and date at job start Sun Mar 29 2020 23:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.81192 * 2 1 4 4 C 1.53034 * 109.66048 * 239.46843 * 2 1 3 5 5 C 1.50066 * 110.14005 * 289.77650 * 4 2 1 6 6 C 1.29440 * 124.07351 * 342.82956 * 5 4 2 7 7 C 1.50071 * 124.07621 * 0.49416 * 6 5 4 8 8 C 1.53015 * 110.14536 * 342.86692 * 7 6 5 9 9 H 1.09000 * 109.64615 * 289.53898 * 8 7 6 10 10 C 1.50708 * 109.64188 * 169.11974 * 8 7 6 11 11 O 1.21268 * 120.00233 * 239.99637 * 10 8 7 12 12 N 1.34777 * 119.99482 * 60.00224 * 10 8 7 13 13 C 1.46500 * 119.99746 * 179.97438 * 12 10 8 14 14 C 1.52996 * 109.47368 * 179.97438 * 13 12 10 15 15 C 1.53002 * 109.47346 * 179.97438 * 14 13 12 16 16 C 1.50706 * 109.46931 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00193 * 0.02562 * 16 15 14 18 18 C 1.37879 * 119.99398 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00338 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99424 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46845 * 180.02562 * 20 18 16 22 22 H 1.48503 * 109.47399 * 299.99813 * 20 18 16 23 23 H 1.48498 * 109.47295 * 60.00420 * 20 18 16 24 24 H 1.09002 * 109.47455 * 299.47435 * 1 2 3 25 25 H 1.08997 * 109.47538 * 59.47429 * 1 2 3 26 26 H 1.09004 * 109.47139 * 179.47384 * 1 2 3 27 27 H 1.08999 * 109.37794 * 169.56268 * 4 2 1 28 28 H 1.09005 * 109.23946 * 49.90498 * 4 2 1 29 29 H 1.08002 * 117.96679 * 162.85381 * 5 4 2 30 30 H 1.08004 * 117.96158 * 180.51191 * 6 5 4 31 31 H 1.09004 * 109.35526 * 222.65848 * 7 6 5 32 32 H 1.09001 * 109.24729 * 103.00301 * 7 6 5 33 33 H 0.97003 * 120.00723 * 359.97438 * 12 10 8 34 34 H 1.09000 * 109.47175 * 59.99850 * 13 12 10 35 35 H 1.09004 * 109.47042 * 299.99808 * 13 12 10 36 36 H 1.09004 * 109.47368 * 59.99943 * 14 13 12 37 37 H 1.09004 * 109.47108 * 300.00044 * 14 13 12 38 38 H 1.09000 * 109.46986 * 60.00254 * 15 14 13 39 39 H 1.08992 * 109.46974 * 300.00318 * 15 14 13 40 40 H 0.97000 * 119.99706 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8994 1.0255 0.0000 4 6 2.0448 -0.7321 -1.2413 5 6 1.7698 -2.2028 -1.1251 6 6 1.4814 -2.8010 -0.0140 7 6 1.3713 -2.1057 1.3114 8 6 2.0456 -0.7338 1.2444 9 1 3.1263 -0.8594 1.1779 10 6 1.7029 0.0600 2.4788 11 8 1.1219 1.1195 2.3766 12 7 2.0423 -0.4078 3.6964 13 6 1.7097 0.3640 4.8964 14 6 2.2018 -0.3843 6.1368 15 6 1.8550 0.4220 7.3900 16 6 2.3392 -0.3155 8.6118 17 1 2.8442 -1.2642 8.5051 18 6 2.1375 0.2211 9.8658 19 7 1.5221 1.3761 9.9957 20 14 2.7383 -0.6927 11.3802 21 1 2.4005 0.0893 12.5966 22 1 2.0812 -2.0227 11.4491 23 1 4.2103 -0.8714 11.2990 24 1 -0.3634 0.5056 0.8947 25 1 -0.3634 0.5219 -0.8852 26 1 -0.3633 -1.0277 -0.0094 27 1 3.1188 -0.5718 -1.3362 28 1 1.5415 -0.3391 -2.1247 29 1 1.8156 -2.7992 -2.0242 30 1 1.3095 -3.8669 -0.0425 31 1 1.8569 -2.7100 2.0777 32 1 0.3187 -1.9790 1.5644 33 1 2.5068 -1.2554 3.7783 34 1 0.6292 0.4949 4.9563 35 1 2.1917 1.3404 4.8456 36 1 3.2823 -0.5156 6.0771 37 1 1.7195 -1.3605 6.1874 38 1 0.7746 0.5536 7.4499 39 1 2.3376 1.3980 7.3391 40 1 1.2105 1.8507 9.2092 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340739354.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:09:32 Heat of formation + Delta-G solvation = -60.907575 kcal Electronic energy + Delta-G solvation = -18223.456894 eV Core-core repulsion = 15422.794256 eV Total energy + Delta-G solvation = -2800.662638 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.50852 -38.11452 -35.53492 -33.63879 -32.17323 -31.79023 -30.59015 -27.52325 -26.19272 -24.13440 -22.96397 -21.59541 -20.91409 -19.87946 -17.51442 -17.24246 -16.81502 -16.15280 -15.41354 -15.19704 -14.55497 -14.29473 -14.01486 -13.73640 -13.58561 -13.41458 -12.95417 -12.64784 -12.59671 -11.96575 -11.83365 -11.62910 -11.47972 -11.00928 -10.93898 -10.79596 -10.76598 -10.42846 -10.18019 -10.01923 -9.98102 -9.44846 -9.24887 -8.81686 -8.57831 -8.34551 -6.37760 -4.07590 2.03726 2.75218 3.35654 3.42893 3.44677 3.63632 4.35225 4.43302 4.53614 4.65607 4.95630 5.01490 5.04545 5.11968 5.24005 5.35855 5.39451 5.48514 5.58772 5.60292 5.67009 5.67622 5.75206 5.89969 5.99077 6.04098 6.10247 6.31012 6.42055 6.43812 6.46685 6.68383 6.73012 6.84900 7.34849 7.47403 7.67491 8.17346 8.37457 8.43705 8.86175 9.65100 11.03010 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.048733 B = 0.003420 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.422643 B = 8184.588651 C = 8550.229482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.070 4.070 3 H 0.081 0.919 4 C -0.089 4.089 5 C -0.153 4.153 6 C -0.153 4.153 7 C -0.083 4.083 8 C -0.104 4.104 9 H 0.097 0.903 10 C 0.513 3.487 11 O -0.540 6.540 12 N -0.726 5.726 13 C 0.116 3.884 14 C -0.114 4.114 15 C 0.011 3.989 16 C -0.604 4.604 17 H 0.049 0.951 18 C 0.014 3.986 19 N -0.912 5.912 20 Si 1.070 2.930 21 H -0.282 1.282 22 H -0.288 1.288 23 H -0.288 1.288 24 H 0.071 0.929 25 H 0.050 0.950 26 H 0.054 0.946 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.102 0.898 30 H 0.105 0.895 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.398 0.602 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.010 0.990 39 H 0.010 0.990 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.311 -7.934 -22.023 23.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.089 4.089 3 H 0.099 0.901 4 C -0.126 4.126 5 C -0.171 4.171 6 C -0.171 4.171 7 C -0.121 4.121 8 C -0.126 4.126 9 H 0.115 0.885 10 C 0.298 3.702 11 O -0.417 6.417 12 N -0.377 5.377 13 C -0.007 4.007 14 C -0.152 4.152 15 C -0.027 4.027 16 C -0.643 4.643 17 H 0.067 0.933 18 C -0.190 4.190 19 N -0.548 5.548 20 Si 0.898 3.102 21 H -0.207 1.207 22 H -0.214 1.214 23 H -0.214 1.214 24 H 0.090 0.910 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.120 0.880 30 H 0.123 0.877 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.232 0.768 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.028 0.972 39 H 0.028 0.972 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.957 -7.081 -20.421 21.635 hybrid contribution 0.220 -0.641 -1.662 1.795 sum 1.177 -7.722 -22.083 23.424 Atomic orbital electron populations 1.21949 0.94540 1.01698 1.02675 1.20944 0.96824 0.99129 0.92029 0.90065 1.20573 1.01091 0.92648 0.98273 1.22051 1.00853 0.96416 0.97759 1.21965 1.01447 0.99530 0.94186 1.20451 1.01716 0.93663 0.96234 1.21440 1.01911 0.95656 0.93557 0.88533 1.20565 0.78836 0.86139 0.84629 1.90666 1.41249 1.23098 1.86736 1.46227 1.60016 1.25083 1.06366 1.21624 1.00482 0.95235 0.83385 1.21747 1.00234 0.99365 0.93826 1.19155 0.96311 0.95345 0.91882 1.22022 1.41746 1.07995 0.92497 0.93295 1.25874 0.95100 0.96641 1.01366 1.70779 1.36009 1.14176 1.33821 0.83536 0.76012 0.75129 0.75548 1.20737 1.21446 1.21442 0.91034 0.93065 0.92724 0.90820 0.90724 0.87999 0.87682 0.90516 0.89992 0.76841 0.91915 0.91916 0.92588 0.92570 0.97206 0.97207 0.92020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 8.29 37.16 0.31 -1.37 16 2 C -0.07 -0.74 2.35 -90.40 -0.21 -0.95 16 3 H 0.08 0.95 7.89 -51.93 -0.41 0.54 16 4 C -0.09 -0.72 5.56 -28.17 -0.16 -0.88 16 5 C -0.15 -1.21 9.40 -35.90 -0.34 -1.55 16 6 C -0.15 -1.26 9.15 -35.90 -0.33 -1.59 16 7 C -0.08 -0.77 4.64 -28.18 -0.13 -0.90 16 8 C -0.10 -1.10 2.38 -91.56 -0.22 -1.32 16 9 H 0.10 0.90 8.13 -51.93 -0.42 0.48 16 10 C 0.51 7.36 6.86 -10.98 -0.08 7.29 16 11 O -0.54 -9.77 14.21 5.57 0.08 -9.69 16 12 N -0.73 -10.27 5.46 -60.29 -0.33 -10.60 16 13 C 0.12 2.03 5.67 -4.04 -0.02 2.01 16 14 C -0.11 -2.25 5.27 -26.73 -0.14 -2.39 16 15 C 0.01 0.27 4.28 -27.88 -0.12 0.15 16 16 C -0.60 -17.18 9.11 -34.44 -0.31 -17.49 16 17 H 0.05 1.35 7.74 -52.49 -0.41 0.94 16 18 C 0.01 0.41 5.46 -17.82 -0.10 0.31 16 19 N -0.91 -28.19 13.65 55.43 0.76 -27.43 16 20 Si 1.07 25.23 29.90 -169.99 -5.08 20.15 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 24 H 0.07 0.98 6.25 -51.93 -0.32 0.66 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.57 5.71 -51.93 -0.30 0.27 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.55 8.11 -51.93 -0.42 0.13 16 29 H 0.10 0.68 8.06 -52.49 -0.42 0.25 16 30 H 0.11 0.74 8.06 -52.48 -0.42 0.32 16 31 H 0.08 0.61 7.89 -51.93 -0.41 0.20 16 32 H 0.08 0.83 6.88 -51.93 -0.36 0.47 16 33 H 0.40 4.56 8.14 -40.82 -0.33 4.23 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.01 0.26 8.01 -51.93 -0.42 -0.16 16 39 H 0.01 0.26 8.01 -51.93 -0.42 -0.16 16 40 H 0.27 8.30 7.22 -40.82 -0.29 8.01 16 LS Contribution 317.91 15.07 4.79 4.79 Total: -1.00 -32.32 317.91 -8.31 -40.64 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -6.68 Total: 0.82 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: -1.84 Total: -18.67 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: 0.43 Total: -38.03 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.08 Total: -9.69 kcal Atomic # 14 Polarization: 25.23 SS G_CDS: -5.08 Total: 20.15 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.32 -8.31 -40.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340739354.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.272 kcal (2) G-P(sol) polarization free energy of solvation -32.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds