Wall clock time and date at job start Sun Mar 29 2020 23:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.81192 * 2 1 4 4 C 1.53034 * 109.66048 * 239.46843 * 2 1 3 5 5 C 1.50066 * 110.14005 * 289.77650 * 4 2 1 6 6 C 1.29440 * 124.07351 * 342.82956 * 5 4 2 7 7 C 1.50071 * 124.07621 * 0.49416 * 6 5 4 8 8 C 1.53015 * 110.14536 * 342.86692 * 7 6 5 9 9 H 1.09000 * 109.64615 * 289.53898 * 8 7 6 10 10 C 1.50708 * 109.64188 * 169.11974 * 8 7 6 11 11 O 1.21268 * 120.00233 * 239.99637 * 10 8 7 12 12 N 1.34777 * 119.99482 * 60.00224 * 10 8 7 13 13 C 1.46500 * 119.99746 * 179.97438 * 12 10 8 14 14 C 1.52996 * 109.47368 * 179.97438 * 13 12 10 15 15 C 1.53002 * 109.47346 * 179.97438 * 14 13 12 16 16 C 1.50706 * 109.46931 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00193 * 0.02562 * 16 15 14 18 18 C 1.37879 * 119.99398 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00338 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99424 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46845 * 180.02562 * 20 18 16 22 22 H 1.48503 * 109.47399 * 299.99813 * 20 18 16 23 23 H 1.48498 * 109.47295 * 60.00420 * 20 18 16 24 24 H 1.09002 * 109.47455 * 299.47435 * 1 2 3 25 25 H 1.08997 * 109.47538 * 59.47429 * 1 2 3 26 26 H 1.09004 * 109.47139 * 179.47384 * 1 2 3 27 27 H 1.08999 * 109.37794 * 169.56268 * 4 2 1 28 28 H 1.09005 * 109.23946 * 49.90498 * 4 2 1 29 29 H 1.08002 * 117.96679 * 162.85381 * 5 4 2 30 30 H 1.08004 * 117.96158 * 180.51191 * 6 5 4 31 31 H 1.09004 * 109.35526 * 222.65848 * 7 6 5 32 32 H 1.09001 * 109.24729 * 103.00301 * 7 6 5 33 33 H 0.97003 * 120.00723 * 359.97438 * 12 10 8 34 34 H 1.09000 * 109.47175 * 59.99850 * 13 12 10 35 35 H 1.09004 * 109.47042 * 299.99808 * 13 12 10 36 36 H 1.09004 * 109.47368 * 59.99943 * 14 13 12 37 37 H 1.09004 * 109.47108 * 300.00044 * 14 13 12 38 38 H 1.09000 * 109.46986 * 60.00254 * 15 14 13 39 39 H 1.08992 * 109.46974 * 300.00318 * 15 14 13 40 40 H 0.97000 * 119.99706 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8994 1.0255 0.0000 4 6 2.0448 -0.7321 -1.2413 5 6 1.7698 -2.2028 -1.1251 6 6 1.4814 -2.8010 -0.0140 7 6 1.3713 -2.1057 1.3114 8 6 2.0456 -0.7338 1.2444 9 1 3.1263 -0.8594 1.1779 10 6 1.7029 0.0600 2.4788 11 8 1.1219 1.1195 2.3766 12 7 2.0423 -0.4078 3.6964 13 6 1.7097 0.3640 4.8964 14 6 2.2018 -0.3843 6.1368 15 6 1.8550 0.4220 7.3900 16 6 2.3392 -0.3155 8.6118 17 1 2.8442 -1.2642 8.5051 18 6 2.1375 0.2211 9.8658 19 7 1.5221 1.3761 9.9957 20 14 2.7383 -0.6927 11.3802 21 1 2.4005 0.0893 12.5966 22 1 2.0812 -2.0227 11.4491 23 1 4.2103 -0.8714 11.2990 24 1 -0.3634 0.5056 0.8947 25 1 -0.3634 0.5219 -0.8852 26 1 -0.3633 -1.0277 -0.0094 27 1 3.1188 -0.5718 -1.3362 28 1 1.5415 -0.3391 -2.1247 29 1 1.8156 -2.7992 -2.0242 30 1 1.3095 -3.8669 -0.0425 31 1 1.8569 -2.7100 2.0777 32 1 0.3187 -1.9790 1.5644 33 1 2.5068 -1.2554 3.7783 34 1 0.6292 0.4949 4.9563 35 1 2.1917 1.3404 4.8456 36 1 3.2823 -0.5156 6.0771 37 1 1.7195 -1.3605 6.1874 38 1 0.7746 0.5536 7.4499 39 1 2.3376 1.3980 7.3391 40 1 1.2105 1.8507 9.2092 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340739354.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:09:32 Heat of formation + Delta-G solvation = -80.651358 kcal Electronic energy + Delta-G solvation = -18224.313049 eV Core-core repulsion = 15422.794256 eV Total energy + Delta-G solvation = -2801.518793 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.52852 -39.09791 -37.12595 -35.49353 -33.23889 -32.91084 -31.77440 -28.65022 -27.72847 -25.33096 -24.48993 -22.68482 -22.45728 -21.02845 -18.95184 -18.36311 -18.14314 -17.14692 -16.74214 -16.42737 -15.65296 -15.63437 -15.25395 -15.08166 -15.03017 -14.56224 -14.13062 -13.85194 -13.63914 -13.35551 -13.26056 -12.76633 -12.61970 -12.58534 -12.29413 -12.08088 -11.90678 -11.82881 -11.77399 -11.58405 -11.20018 -10.79993 -10.56151 -10.55451 -10.13666 -9.84740 -8.70006 -6.41332 1.44814 1.53565 1.60080 1.62371 1.81323 2.16949 2.58091 3.15364 3.51445 3.67655 3.82527 4.02140 4.07598 4.17440 4.28895 4.29776 4.39560 4.42833 4.51098 4.59814 4.74599 4.76237 4.83542 4.88003 4.93588 4.95109 5.07750 5.12944 5.21543 5.29256 5.31534 5.40017 5.45291 5.49250 5.81115 5.96370 6.08607 6.17068 6.53242 6.55831 7.22928 7.42033 8.70861 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.048733 B = 0.003420 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.422643 B = 8184.588651 C = 8550.229482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.073 4.073 3 H 0.064 0.936 4 C -0.085 4.085 5 C -0.153 4.153 6 C -0.160 4.160 7 C -0.082 4.082 8 C -0.096 4.096 9 H 0.117 0.883 10 C 0.510 3.490 11 O -0.582 6.582 12 N -0.716 5.716 13 C 0.130 3.870 14 C -0.095 4.095 15 C 0.007 3.993 16 C -0.619 4.619 17 H 0.058 0.942 18 C -0.043 4.043 19 N -0.940 5.940 20 Si 1.120 2.880 21 H -0.286 1.286 22 H -0.266 1.266 23 H -0.266 1.266 24 H 0.038 0.962 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.120 0.880 30 H 0.120 0.880 31 H 0.092 0.908 32 H 0.068 0.932 33 H 0.414 0.586 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.067 0.933 37 H 0.068 0.932 38 H -0.012 1.012 39 H -0.012 1.012 40 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.627 -10.509 -23.217 25.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.092 4.092 3 H 0.082 0.918 4 C -0.122 4.122 5 C -0.170 4.170 6 C -0.178 4.178 7 C -0.119 4.119 8 C -0.117 4.117 9 H 0.135 0.865 10 C 0.298 3.702 11 O -0.462 6.462 12 N -0.368 5.368 13 C 0.006 3.994 14 C -0.133 4.133 15 C -0.030 4.030 16 C -0.657 4.657 17 H 0.077 0.923 18 C -0.240 4.240 19 N -0.578 5.578 20 Si 0.941 3.059 21 H -0.212 1.212 22 H -0.191 1.191 23 H -0.191 1.191 24 H 0.057 0.943 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.103 0.897 28 H 0.103 0.897 29 H 0.138 0.862 30 H 0.138 0.862 31 H 0.110 0.890 32 H 0.087 0.913 33 H 0.251 0.749 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.006 0.994 39 H 0.006 0.994 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.290 -9.693 -21.655 23.835 hybrid contribution -0.221 0.211 -1.343 1.377 sum 2.069 -9.482 -22.997 24.961 Atomic orbital electron populations 1.21891 0.95297 1.01810 1.01459 1.20960 0.96215 0.98700 0.93349 0.91781 1.20559 1.01821 0.92719 0.97073 1.22207 1.00253 0.96183 0.98397 1.22018 1.02027 1.00270 0.93489 1.20455 1.00877 0.92844 0.97735 1.21465 1.03211 0.95817 0.91194 0.86515 1.21323 0.77641 0.85796 0.85462 1.90657 1.43030 1.25162 1.87314 1.46026 1.60055 1.25411 1.05293 1.21187 0.99256 0.94798 0.84196 1.21477 1.01033 0.98898 0.91912 1.19120 0.94606 0.95098 0.94203 1.22496 1.41213 1.08403 0.93542 0.92336 1.27541 0.94486 0.96595 1.05372 1.70921 1.38092 1.15633 1.33122 0.82907 0.76892 0.74645 0.71487 1.21201 1.19132 1.19133 0.94252 0.92205 0.91917 0.89653 0.89740 0.86206 0.86165 0.89011 0.91331 0.74878 0.93442 0.93420 0.91395 0.91345 0.99356 0.99356 0.93635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 8.29 71.98 0.60 -2.63 16 2 C -0.07 -1.45 2.35 -10.65 -0.03 -1.48 16 3 H 0.06 1.49 7.89 -2.38 -0.02 1.47 16 4 C -0.08 -1.16 5.56 29.66 0.16 -1.00 16 5 C -0.15 -1.92 9.40 27.04 0.25 -1.66 16 6 C -0.16 -2.14 9.15 27.04 0.25 -1.89 16 7 C -0.08 -1.32 4.64 29.66 0.14 -1.18 16 8 C -0.10 -1.88 2.38 -11.40 -0.03 -1.90 16 9 H 0.12 1.86 8.13 -2.39 -0.02 1.84 16 10 C 0.51 14.47 6.86 87.66 0.60 15.07 16 11 O -0.58 -21.67 14.21 -2.99 -0.04 -21.71 16 12 N -0.72 -19.58 5.46 -463.06 -2.53 -22.11 16 13 C 0.13 4.62 5.67 86.38 0.49 5.11 16 14 C -0.10 -3.71 5.27 30.59 0.16 -3.55 16 15 C 0.01 0.38 4.28 29.85 0.13 0.51 16 16 C -0.62 -35.11 9.11 25.60 0.23 -34.87 16 17 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 18 C -0.04 -2.51 5.46 84.66 0.46 -2.04 16 19 N -0.94 -59.39 13.65 21.45 0.29 -59.10 16 20 Si 1.12 49.86 29.90 68.60 2.05 51.91 16 21 H -0.29 -12.87 7.11 99.48 0.71 -12.17 16 22 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 23 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 24 H 0.04 1.11 6.25 -2.39 -0.01 1.10 16 25 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.06 1.24 5.71 -2.39 -0.01 1.23 16 27 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.08 1.01 8.11 -2.38 -0.02 1.00 16 29 H 0.12 1.12 8.06 -2.91 -0.02 1.10 16 30 H 0.12 1.27 8.06 -2.91 -0.02 1.25 16 31 H 0.09 1.19 7.89 -2.38 -0.02 1.17 16 32 H 0.07 1.30 6.88 -2.39 -0.02 1.29 16 33 H 0.41 8.57 8.14 -92.71 -0.75 7.82 16 34 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 36 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 37 H 0.07 2.51 8.14 -2.38 -0.02 2.49 16 38 H -0.01 -0.66 8.01 -2.39 -0.02 -0.68 16 39 H -0.01 -0.66 8.01 -2.39 -0.02 -0.68 16 40 H 0.25 16.34 7.22 -92.71 -0.67 15.67 16 Total: -1.00 -71.16 317.91 3.55 -67.61 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: 0.35 Total: 14.91 kcal Atomic # 6 Polarization: -34.94 SS G_CDS: 3.42 Total: -31.52 kcal Atomic # 7 Polarization: -78.97 SS G_CDS: -2.24 Total: -81.21 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -0.04 Total: -21.71 kcal Atomic # 14 Polarization: 49.86 SS G_CDS: 2.05 Total: 51.91 kcal Total: -71.16 3.55 -67.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340739354.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.039 kcal (2) G-P(sol) polarization free energy of solvation -71.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds