Wall clock time and date at job start Sun Mar 29 2020 23:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.63729 * 2 1 4 4 C 1.53023 * 109.64537 * 120.63831 * 2 1 3 5 5 C 1.50066 * 110.14511 * 169.12219 * 4 2 1 6 6 C 1.29441 * 124.08059 * 342.86873 * 5 4 2 7 7 C 1.50164 * 124.14407 * 0.24087 * 6 5 4 8 8 C 1.53025 * 110.09682 * 343.28413 * 7 6 5 9 9 H 1.08999 * 109.63843 * 289.32253 * 8 7 6 10 10 C 1.50698 * 109.64306 * 168.90495 * 8 7 6 11 11 O 1.21282 * 120.00238 * 324.48147 * 10 8 7 12 12 N 1.34778 * 119.99738 * 144.48688 * 10 8 7 13 13 C 1.46500 * 119.99663 * 179.97438 * 12 10 8 14 14 C 1.53002 * 109.47026 * 179.97438 * 13 12 10 15 15 C 1.53003 * 109.47074 * 179.97438 * 14 13 12 16 16 C 1.50706 * 109.47008 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99629 * 359.97438 * 16 15 14 18 18 C 1.37872 * 119.99674 * 180.02562 * 16 15 14 19 19 N 1.31520 * 119.99604 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 120.00347 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47324 * 90.00001 * 20 18 16 22 22 H 1.48497 * 109.47073 * 210.00122 * 20 18 16 23 23 H 1.48501 * 109.47210 * 329.99913 * 20 18 16 24 24 H 1.08998 * 109.46670 * 174.93110 * 1 2 3 25 25 H 1.09005 * 109.47067 * 294.92445 * 1 2 3 26 26 H 1.08999 * 109.47412 * 54.92491 * 1 2 3 27 27 H 1.08998 * 109.35654 * 289.32376 * 4 2 1 28 28 H 1.08996 * 109.35719 * 48.91482 * 4 2 1 29 29 H 1.08005 * 117.96332 * 162.89089 * 5 4 2 30 30 H 1.07999 * 117.96682 * 180.49725 * 6 5 4 31 31 H 1.09004 * 109.55947 * 222.98540 * 7 6 5 32 32 H 1.08997 * 109.21205 * 103.36411 * 7 6 5 33 33 H 0.96993 * 120.00319 * 359.97438 * 12 10 8 34 34 H 1.09001 * 109.47239 * 59.99893 * 13 12 10 35 35 H 1.08997 * 109.47436 * 299.99583 * 13 12 10 36 36 H 1.08993 * 109.47237 * 59.99727 * 14 13 12 37 37 H 1.09007 * 109.47152 * 299.99730 * 14 13 12 38 38 H 1.09001 * 109.47167 * 60.00054 * 15 14 13 39 39 H 1.09000 * 109.47164 * 300.00208 * 15 14 13 40 40 H 0.97004 * 119.99725 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8963 1.0266 0.0000 4 6 2.0444 -0.7344 1.2400 5 6 3.5212 -0.9742 1.1231 6 6 4.1818 -0.9034 0.0122 7 6 3.5654 -0.5665 -1.3150 8 6 2.0456 -0.7313 -1.2459 9 1 1.7945 -1.7899 -1.1795 10 6 1.4150 -0.1376 -2.4791 11 8 1.8895 0.8581 -2.9834 12 7 0.3237 -0.7131 -3.0216 13 6 -0.2896 -0.1356 -4.2201 14 6 -1.5028 -0.9744 -4.6269 15 6 -2.1438 -0.3709 -5.8783 16 6 -3.3384 -1.1975 -6.2793 17 1 -3.6127 -2.0666 -5.6997 18 6 -4.0804 -0.8448 -7.3865 19 7 -5.1226 -1.5665 -7.7367 20 14 -3.6046 0.6571 -8.3900 21 1 -2.6568 0.2571 -9.4608 22 1 -4.8212 1.2494 -9.0017 23 1 -2.9575 1.6590 -7.5052 24 1 -0.3632 -1.0237 -0.0908 25 1 -0.3633 0.4331 0.9320 26 1 -0.3634 0.5905 -0.8410 27 1 1.8454 -0.1312 2.1257 28 1 1.5294 -1.6905 1.3332 29 1 4.0668 -1.2216 2.0217 30 1 5.2428 -1.1031 0.0403 31 1 3.9661 -1.2291 -2.0822 32 1 3.8055 0.4655 -1.5704 33 1 -0.0556 -1.5096 -2.6185 34 1 0.4366 -0.1297 -5.0330 35 1 -0.6076 0.8855 -4.0096 36 1 -2.2291 -0.9808 -3.8142 37 1 -1.1845 -1.9955 -4.8377 38 1 -1.4176 -0.3642 -6.6912 39 1 -2.4621 0.6499 -5.6671 40 1 -5.6444 -1.3186 -8.5159 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340739364.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:09:36 Heat of formation + Delta-G solvation = -77.341704 kcal Electronic energy + Delta-G solvation = -18234.396416 eV Core-core repulsion = 15433.021140 eV Total energy + Delta-G solvation = -2801.375276 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.39202 -38.87979 -36.96578 -35.17122 -33.86082 -33.14797 -31.96836 -29.02913 -27.56351 -25.48959 -23.95865 -22.38697 -22.24887 -20.95148 -19.02769 -18.95384 -17.98628 -16.96763 -16.82441 -16.37822 -16.02455 -15.78192 -15.15573 -14.82282 -14.76049 -14.37621 -14.04284 -13.82117 -13.62862 -13.57318 -13.05665 -13.02822 -12.75470 -12.72611 -12.67524 -11.95761 -11.80089 -11.68860 -11.60926 -11.57760 -11.34105 -11.28874 -10.76956 -10.64078 -10.07838 -9.83785 -8.30192 -6.33997 1.36083 1.37734 1.42854 1.49478 1.63736 2.22713 2.35582 3.05601 3.58215 3.71812 3.74697 4.06454 4.17311 4.19129 4.21765 4.35409 4.40454 4.49661 4.54471 4.58495 4.79650 4.86072 4.87966 4.91319 4.96845 5.00968 5.03151 5.14273 5.19541 5.26972 5.37836 5.42576 5.51030 5.54795 5.64460 5.78256 6.07760 6.26729 6.58623 6.74162 7.26139 7.30968 8.86252 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.045242 B = 0.003665 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.743186 B = 7638.522716 C = 7892.914264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.075 4.075 3 H 0.060 0.940 4 C -0.082 4.082 5 C -0.156 4.156 6 C -0.163 4.163 7 C -0.079 4.079 8 C -0.096 4.096 9 H 0.113 0.887 10 C 0.516 3.484 11 O -0.590 6.590 12 N -0.715 5.715 13 C 0.126 3.874 14 C -0.099 4.099 15 C -0.012 4.012 16 C -0.530 4.530 17 H 0.038 0.962 18 C 0.005 3.995 19 N -0.950 5.950 20 Si 0.947 3.053 21 H -0.267 1.267 22 H -0.284 1.284 23 H -0.249 1.249 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.036 0.964 27 H 0.088 0.912 28 H 0.092 0.908 29 H 0.122 0.878 30 H 0.116 0.884 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.414 0.586 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.018 0.982 39 H 0.020 0.980 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.086 0.619 19.613 26.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.094 4.094 3 H 0.079 0.921 4 C -0.119 4.119 5 C -0.173 4.173 6 C -0.181 4.181 7 C -0.116 4.116 8 C -0.117 4.117 9 H 0.131 0.869 10 C 0.304 3.696 11 O -0.470 6.470 12 N -0.366 5.366 13 C 0.002 3.998 14 C -0.137 4.137 15 C -0.050 4.050 16 C -0.568 4.568 17 H 0.057 0.943 18 C -0.192 4.192 19 N -0.591 5.591 20 Si 0.770 3.230 21 H -0.193 1.193 22 H -0.210 1.210 23 H -0.173 1.173 24 H 0.092 0.908 25 H 0.091 0.909 26 H 0.055 0.945 27 H 0.106 0.894 28 H 0.110 0.890 29 H 0.140 0.860 30 H 0.134 0.866 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.250 0.750 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.037 0.963 39 H 0.038 0.962 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 17.274 1.301 19.125 25.804 hybrid contribution -0.452 0.170 -0.872 0.997 sum 16.822 1.471 18.253 24.866 Atomic orbital electron populations 1.21937 0.94098 1.02907 1.02112 1.21086 0.96122 0.98991 0.93247 0.92144 1.20552 0.93087 1.01357 0.96894 1.22278 0.96465 1.00418 0.98180 1.22058 1.00414 1.02023 0.93620 1.20325 0.92216 1.02152 0.96904 1.21471 0.96400 1.02054 0.91753 0.86925 1.21156 0.79676 0.83393 0.85409 1.90659 1.64039 1.27755 1.64556 1.46102 1.29574 1.31668 1.29282 1.21280 0.94571 0.97088 0.86871 1.21473 0.95132 0.98939 0.98171 1.19470 0.94627 0.96170 0.94759 1.21463 1.11737 1.12106 1.11518 0.94338 1.25975 0.94612 0.99946 0.98656 1.70060 1.19678 1.41621 1.27732 0.85705 0.78024 0.80029 0.79197 1.19254 1.20963 1.17261 0.90767 0.90876 0.94529 0.89376 0.88982 0.86037 0.86558 0.90658 0.91609 0.74969 0.92647 0.92746 0.91646 0.91688 0.96335 0.96200 0.92489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 8.58 71.98 0.62 -1.91 16 2 C -0.08 -1.29 2.39 -10.66 -0.03 -1.31 16 3 H 0.06 1.27 8.13 -2.39 -0.02 1.25 16 4 C -0.08 -0.98 5.44 29.66 0.16 -0.82 16 5 C -0.16 -1.99 9.80 27.04 0.27 -1.73 16 6 C -0.16 -2.48 9.80 27.07 0.27 -2.21 16 7 C -0.08 -1.54 5.30 29.69 0.16 -1.38 16 8 C -0.10 -1.84 2.19 -11.40 -0.02 -1.87 16 9 H 0.11 1.66 8.09 -2.39 -0.02 1.64 16 10 C 0.52 14.05 5.54 87.66 0.49 14.54 16 11 O -0.59 -21.37 16.07 -3.04 -0.05 -21.42 16 12 N -0.71 -18.35 5.16 -463.06 -2.39 -20.74 16 13 C 0.13 4.03 5.67 86.38 0.49 4.52 16 14 C -0.10 -3.58 5.27 30.60 0.16 -3.42 16 15 C -0.01 -0.56 4.04 29.85 0.12 -0.44 16 16 C -0.53 -30.12 9.66 25.60 0.25 -29.88 16 17 H 0.04 2.37 7.99 -2.91 -0.02 2.35 16 18 C 0.01 0.29 5.47 84.65 0.46 0.75 16 19 N -0.95 -59.41 13.96 21.45 0.30 -59.11 16 20 Si 0.95 44.55 27.47 68.60 1.88 46.44 16 21 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 22 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 23 H -0.25 -11.00 6.54 99.48 0.65 -10.35 16 24 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 26 H 0.04 0.79 7.12 -2.39 -0.02 0.77 16 27 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.09 0.88 8.10 -2.39 -0.02 0.86 16 29 H 0.12 1.14 8.06 -2.91 -0.02 1.12 16 30 H 0.12 1.47 8.06 -2.91 -0.02 1.44 16 31 H 0.07 1.41 8.14 -2.38 -0.02 1.40 16 32 H 0.07 1.59 7.47 -2.39 -0.02 1.57 16 33 H 0.41 8.19 8.44 -92.71 -0.78 7.41 16 34 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 38 H 0.02 0.83 7.57 -2.39 -0.02 0.81 16 39 H 0.02 0.90 7.20 -2.39 -0.02 0.89 16 40 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -70.10 322.25 3.29 -66.82 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: 0.16 Total: 13.16 kcal Atomic # 6 Polarization: -28.54 SS G_CDS: 3.38 Total: -25.15 kcal Atomic # 7 Polarization: -77.76 SS G_CDS: -2.09 Total: -79.85 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: -0.05 Total: -21.42 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.88 Total: 46.44 kcal Total: -70.10 3.29 -66.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340739364.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.526 kcal (2) G-P(sol) polarization free energy of solvation -70.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds