Wall clock time and date at job start Sun Mar 29 2020 23:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.46909 * 2 1 4 4 C 1.50694 * 109.46848 * 239.99699 * 2 1 3 5 5 H 1.07998 * 120.00192 * 274.06184 * 4 2 1 6 6 C 1.37877 * 119.99962 * 94.07114 * 4 2 1 7 7 N 1.31515 * 120.00156 * 178.31386 * 6 4 2 8 8 Si 1.86800 * 120.00056 * 358.31522 * 6 4 2 9 9 H 1.48497 * 109.47552 * 84.96463 * 8 6 4 10 10 H 1.48506 * 109.47211 * 204.97326 * 8 6 4 11 11 H 1.48507 * 109.46819 * 324.96531 * 8 6 4 12 12 N 1.46503 * 109.47142 * 119.99804 * 2 1 3 13 13 C 1.46493 * 120.00029 * 59.99773 * 12 2 1 14 14 C 1.34774 * 120.00010 * 240.00119 * 12 2 1 15 15 O 1.21289 * 119.99979 * 4.86506 * 14 12 2 16 16 C 1.50697 * 120.00350 * 184.86666 * 14 12 2 17 17 H 1.09004 * 109.81371 * 36.28680 * 16 14 12 18 18 C 1.53443 * 109.94573 * 156.90687 * 16 14 12 19 19 C 1.50070 * 110.26587 * 169.00654 * 18 16 14 20 20 C 1.29439 * 124.07511 * 342.87631 * 19 18 16 21 21 C 1.50065 * 124.07549 * 0.48978 * 20 19 18 22 22 C 1.53018 * 110.14909 * 342.87318 * 21 20 19 23 23 H 1.09001 * 109.64362 * 169.33348 * 22 21 20 24 24 C 1.52999 * 109.63930 * 289.74670 * 22 21 20 25 25 H 1.09008 * 109.47096 * 294.67769 * 1 2 3 26 26 H 1.08999 * 109.47220 * 54.68041 * 1 2 3 27 27 H 1.08998 * 109.47136 * 174.68167 * 1 2 3 28 28 H 0.96997 * 120.00192 * 179.97438 * 7 6 4 29 29 H 1.08997 * 109.47271 * 265.57322 * 13 12 2 30 30 H 1.09000 * 109.47264 * 25.57463 * 13 12 2 31 31 H 1.09005 * 109.47426 * 145.57151 * 13 12 2 32 32 H 1.08997 * 109.27524 * 48.77856 * 18 16 14 33 33 H 1.08997 * 109.21110 * 289.19037 * 18 16 14 34 34 H 1.07998 * 117.96103 * 162.89793 * 19 18 16 35 35 H 1.08007 * 117.96188 * 180.51778 * 20 19 18 36 36 H 1.09005 * 109.35796 * 222.65689 * 21 20 19 37 37 H 1.09006 * 109.35507 * 103.08453 * 21 20 19 38 38 H 1.09001 * 109.47045 * 59.58110 * 24 22 21 39 39 H 1.08999 * 109.47108 * 179.57609 * 24 22 21 40 40 H 1.09002 * 109.47830 * 299.58014 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 -1.2304 5 1 2.1498 -1.7840 -1.2239 6 6 2.3419 0.0101 -2.3644 7 7 2.8117 -0.6060 -3.4271 8 14 2.0944 1.8614 -2.3912 9 1 3.2880 2.5290 -1.8127 10 1 1.9038 2.3151 -3.7924 11 1 0.8942 2.2120 -1.5900 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0931 1.4281 14 6 2.7932 -0.0356 2.0834 15 8 3.0136 1.1482 1.9381 16 6 3.3857 -0.7739 3.2558 17 1 3.6609 -1.7848 2.9550 18 6 4.6288 -0.0335 3.7667 19 6 5.0679 -0.6024 5.0841 20 6 4.3208 -1.3411 5.8402 21 6 2.9150 -1.7408 5.5000 22 6 2.3622 -0.8362 4.3966 23 1 1.4227 -1.2447 4.0241 24 6 2.1267 0.5692 4.9536 25 1 -0.3634 0.4291 0.9339 26 1 -0.3633 0.5941 -0.8385 27 1 -0.3633 -1.0232 -0.0953 28 1 3.0292 -0.0991 -4.2250 29 1 0.7817 -2.1444 2.0655 30 1 1.4527 -2.5769 0.4746 31 1 2.4955 -2.6016 1.9169 32 1 4.3927 1.0234 3.8902 33 1 5.4342 -0.1413 3.0402 34 1 6.0693 -0.3813 5.4226 35 1 4.7350 -1.6914 6.7742 36 1 2.2891 -1.6515 6.3880 37 1 2.9064 -2.7755 5.1572 38 1 3.0676 0.9751 5.3252 39 1 1.7401 1.2131 4.1636 40 1 1.4047 0.5209 5.7688 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342547311.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:09:43 Heat of formation + Delta-G solvation = -32.999446 kcal Electronic energy + Delta-G solvation = -19597.068761 eV Core-core repulsion = 16797.616310 eV Total energy + Delta-G solvation = -2799.452451 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.14718 -37.78947 -35.36456 -32.78746 -32.01013 -31.00485 -29.97989 -27.03762 -26.16275 -25.24171 -23.84737 -21.68370 -20.57005 -18.30900 -17.20873 -17.08894 -16.33260 -15.90983 -15.25460 -14.95982 -14.17235 -13.95280 -13.54768 -13.13687 -12.98284 -12.72454 -12.51683 -12.37094 -12.26604 -12.14091 -11.85066 -11.59168 -11.36655 -11.23260 -11.12145 -10.70713 -10.61418 -10.47944 -10.32691 -10.11393 -9.81051 -9.24324 -8.99673 -8.78523 -8.63193 -7.62894 -6.16520 -4.18663 2.32547 3.30569 3.35500 3.38435 3.44229 3.88097 4.38602 4.67345 4.75541 4.96069 5.18377 5.26515 5.27961 5.38416 5.41979 5.52706 5.59923 5.70352 5.80900 5.91954 5.96566 6.02537 6.06754 6.17837 6.22562 6.28000 6.32045 6.41167 6.42143 6.51138 6.60342 6.69054 6.94532 6.98918 7.09858 7.51944 7.65426 8.17817 8.52808 8.84523 9.00548 9.46230 10.95474 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.032319 B = 0.006374 C = 0.006219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.167685 B = 4391.790068 C = 4501.478303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.224 3.776 3 H 0.062 0.938 4 C -0.525 4.525 5 H 0.078 0.922 6 C 0.079 3.921 7 N -0.893 5.893 8 Si 0.873 3.127 9 H -0.271 1.271 10 H -0.287 1.287 11 H -0.263 1.263 12 N -0.588 5.588 13 C 0.082 3.918 14 C 0.513 3.487 15 O -0.557 6.557 16 C -0.104 4.104 17 H 0.091 0.909 18 C -0.079 4.079 19 C -0.145 4.145 20 C -0.163 4.163 21 C -0.083 4.083 22 C -0.079 4.079 23 H 0.076 0.924 24 C -0.149 4.149 25 H 0.025 0.975 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.266 0.734 29 H 0.042 0.958 30 H 0.081 0.919 31 H 0.057 0.943 32 H 0.091 0.909 33 H 0.072 0.928 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.487 -2.794 16.814 17.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.123 3.877 3 H 0.080 0.920 4 C -0.564 4.564 5 H 0.096 0.904 6 C -0.124 4.124 7 N -0.530 5.530 8 Si 0.700 3.300 9 H -0.197 1.197 10 H -0.214 1.214 11 H -0.187 1.187 12 N -0.318 5.318 13 C -0.061 4.061 14 C 0.300 3.700 15 O -0.436 6.436 16 C -0.125 4.125 17 H 0.109 0.891 18 C -0.116 4.116 19 C -0.163 4.163 20 C -0.181 4.181 21 C -0.120 4.120 22 C -0.098 4.098 23 H 0.094 0.906 24 C -0.206 4.206 25 H 0.045 0.955 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.060 0.940 30 H 0.100 0.900 31 H 0.075 0.925 32 H 0.109 0.891 33 H 0.091 0.909 34 H 0.120 0.880 35 H 0.117 0.883 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.326 -2.156 16.507 16.650 hybrid contribution 0.019 0.714 -0.209 0.744 sum -0.307 -1.441 16.298 16.365 Atomic orbital electron populations 1.22250 0.98510 1.00827 0.99090 1.19222 0.90678 0.94801 0.82951 0.92036 1.21134 1.44692 0.95843 0.94689 0.90404 1.24942 0.93618 0.98414 0.95470 1.69886 1.43027 1.36372 1.03693 0.86928 0.80003 0.86040 0.77009 1.19668 1.21351 1.18715 1.48239 1.49164 1.11647 1.22775 1.21656 0.98915 0.83250 1.02312 1.20330 0.79002 0.87413 0.83243 1.90609 1.61305 1.15799 1.75931 1.21482 0.96421 1.00571 0.94034 0.89066 1.20422 0.96153 1.00813 0.94259 1.22082 0.99187 0.98646 0.96362 1.21968 0.96190 1.00451 0.99525 1.20487 0.94029 0.99128 0.98329 1.21063 0.97779 0.96778 0.94189 0.90587 1.21894 1.01759 0.96129 1.00787 0.95546 0.92661 0.93210 0.92409 0.93953 0.90021 0.92453 0.89061 0.90919 0.88005 0.88271 0.91011 0.90874 0.92001 0.92045 0.93137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.15 9.00 37.16 0.33 -2.82 16 2 C 0.22 5.43 2.22 -69.08 -0.15 5.28 16 3 H 0.06 1.64 4.42 -51.93 -0.23 1.42 16 4 C -0.53 -14.45 8.70 -34.44 -0.30 -14.75 16 5 H 0.08 2.26 6.89 -52.49 -0.36 1.89 16 6 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 7 N -0.89 -26.90 13.96 55.43 0.77 -26.13 16 8 Si 0.87 22.20 26.47 -169.99 -4.50 17.70 16 9 H -0.27 -7.08 7.11 56.52 0.40 -6.68 16 10 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 11 H -0.26 -6.40 6.31 56.52 0.36 -6.05 16 12 N -0.59 -12.24 2.75 -175.27 -0.48 -12.72 16 13 C 0.08 1.36 8.83 59.84 0.53 1.89 16 14 C 0.51 10.39 6.09 -10.99 -0.07 10.33 16 15 O -0.56 -13.28 14.78 5.55 0.08 -13.20 16 16 C -0.10 -1.59 1.65 -91.34 -0.15 -1.74 16 17 H 0.09 1.31 6.29 -51.93 -0.33 0.99 16 18 C -0.08 -1.16 4.55 -27.96 -0.13 -1.28 16 19 C -0.14 -1.70 9.15 -35.90 -0.33 -2.03 16 20 C -0.16 -1.73 9.41 -35.90 -0.34 -2.07 16 21 C -0.08 -0.85 5.56 -28.18 -0.16 -1.01 16 22 C -0.08 -1.01 2.62 -90.41 -0.24 -1.25 16 23 H 0.08 0.96 7.17 -51.93 -0.37 0.59 16 24 C -0.15 -1.97 8.36 37.16 0.31 -1.66 16 25 H 0.03 0.51 8.14 -51.92 -0.42 0.08 16 26 H 0.05 1.20 7.05 -51.93 -0.37 0.83 16 27 H 0.05 0.98 7.85 -51.93 -0.41 0.58 16 28 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.04 0.59 7.70 -51.93 -0.40 0.19 16 30 H 0.08 1.46 6.62 -51.93 -0.34 1.11 16 31 H 0.06 0.81 6.02 -51.93 -0.31 0.50 16 32 H 0.09 1.46 6.26 -51.93 -0.32 1.13 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.10 1.05 8.06 -52.49 -0.42 0.62 16 35 H 0.10 0.89 8.06 -52.48 -0.42 0.46 16 36 H 0.07 0.64 8.11 -51.93 -0.42 0.22 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.82 5.69 -51.93 -0.30 0.52 16 39 H 0.06 0.97 7.17 -51.93 -0.37 0.60 16 40 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 304.32 15.07 4.59 4.59 Total: -1.00 -31.53 304.32 -6.57 -38.10 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -6.25 Total: 0.59 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: -0.78 Total: -8.93 kcal Atomic # 7 Polarization: -39.14 SS G_CDS: 0.29 Total: -38.85 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: 0.08 Total: -13.20 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.50 Total: 17.70 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.53 -6.57 -38.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342547311.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.102 kcal (2) G-P(sol) polarization free energy of solvation -31.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds