Wall clock time and date at job start Sun Mar 29 2020 23:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.46909 * 2 1 4 4 C 1.50694 * 109.46848 * 239.99699 * 2 1 3 5 5 H 1.07998 * 120.00192 * 274.06184 * 4 2 1 6 6 C 1.37877 * 119.99962 * 94.07114 * 4 2 1 7 7 N 1.31515 * 120.00156 * 178.31386 * 6 4 2 8 8 Si 1.86800 * 120.00056 * 358.31522 * 6 4 2 9 9 H 1.48497 * 109.47552 * 84.96463 * 8 6 4 10 10 H 1.48506 * 109.47211 * 204.97326 * 8 6 4 11 11 H 1.48507 * 109.46819 * 324.96531 * 8 6 4 12 12 N 1.46503 * 109.47142 * 119.99804 * 2 1 3 13 13 C 1.46493 * 120.00029 * 59.99773 * 12 2 1 14 14 C 1.34774 * 120.00010 * 240.00119 * 12 2 1 15 15 O 1.21289 * 119.99979 * 4.86506 * 14 12 2 16 16 C 1.50697 * 120.00350 * 184.86666 * 14 12 2 17 17 H 1.09004 * 109.81371 * 36.28680 * 16 14 12 18 18 C 1.53443 * 109.94573 * 156.90687 * 16 14 12 19 19 C 1.50070 * 110.26587 * 169.00654 * 18 16 14 20 20 C 1.29439 * 124.07511 * 342.87631 * 19 18 16 21 21 C 1.50065 * 124.07549 * 0.48978 * 20 19 18 22 22 C 1.53018 * 110.14909 * 342.87318 * 21 20 19 23 23 H 1.09001 * 109.64362 * 169.33348 * 22 21 20 24 24 C 1.52999 * 109.63930 * 289.74670 * 22 21 20 25 25 H 1.09008 * 109.47096 * 294.67769 * 1 2 3 26 26 H 1.08999 * 109.47220 * 54.68041 * 1 2 3 27 27 H 1.08998 * 109.47136 * 174.68167 * 1 2 3 28 28 H 0.96997 * 120.00192 * 179.97438 * 7 6 4 29 29 H 1.08997 * 109.47271 * 265.57322 * 13 12 2 30 30 H 1.09000 * 109.47264 * 25.57463 * 13 12 2 31 31 H 1.09005 * 109.47426 * 145.57151 * 13 12 2 32 32 H 1.08997 * 109.27524 * 48.77856 * 18 16 14 33 33 H 1.08997 * 109.21110 * 289.19037 * 18 16 14 34 34 H 1.07998 * 117.96103 * 162.89793 * 19 18 16 35 35 H 1.08007 * 117.96188 * 180.51778 * 20 19 18 36 36 H 1.09005 * 109.35796 * 222.65689 * 21 20 19 37 37 H 1.09006 * 109.35507 * 103.08453 * 21 20 19 38 38 H 1.09001 * 109.47045 * 59.58110 * 24 22 21 39 39 H 1.08999 * 109.47108 * 179.57609 * 24 22 21 40 40 H 1.09002 * 109.47830 * 299.58014 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 -1.2304 5 1 2.1498 -1.7840 -1.2239 6 6 2.3419 0.0101 -2.3644 7 7 2.8117 -0.6060 -3.4271 8 14 2.0944 1.8614 -2.3912 9 1 3.2880 2.5290 -1.8127 10 1 1.9038 2.3151 -3.7924 11 1 0.8942 2.2120 -1.5900 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0931 1.4281 14 6 2.7932 -0.0356 2.0834 15 8 3.0136 1.1482 1.9381 16 6 3.3857 -0.7739 3.2558 17 1 3.6609 -1.7848 2.9550 18 6 4.6288 -0.0335 3.7667 19 6 5.0679 -0.6024 5.0841 20 6 4.3208 -1.3411 5.8402 21 6 2.9150 -1.7408 5.5000 22 6 2.3622 -0.8362 4.3966 23 1 1.4227 -1.2447 4.0241 24 6 2.1267 0.5692 4.9536 25 1 -0.3634 0.4291 0.9339 26 1 -0.3633 0.5941 -0.8385 27 1 -0.3633 -1.0232 -0.0953 28 1 3.0292 -0.0991 -4.2250 29 1 0.7817 -2.1444 2.0655 30 1 1.4527 -2.5769 0.4746 31 1 2.4955 -2.6016 1.9169 32 1 4.3927 1.0234 3.8902 33 1 5.4342 -0.1413 3.0402 34 1 6.0693 -0.3813 5.4226 35 1 4.7350 -1.6914 6.7742 36 1 2.2891 -1.6515 6.3880 37 1 2.9064 -2.7755 5.1572 38 1 3.0676 0.9751 5.3252 39 1 1.7401 1.2131 4.1636 40 1 1.4047 0.5209 5.7688 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342547311.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:09:43 Heat of formation + Delta-G solvation = -52.390755 kcal Electronic energy + Delta-G solvation = -19597.909631 eV Core-core repulsion = 16797.616310 eV Total energy + Delta-G solvation = -2800.293321 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.50515 -39.09487 -37.10708 -34.74479 -33.19030 -32.38046 -31.39473 -28.09719 -27.62925 -27.27053 -25.06980 -22.90920 -22.03850 -19.86287 -19.18937 -18.28855 -17.64818 -17.32920 -16.79053 -16.43828 -15.78703 -15.20175 -14.79458 -14.64156 -14.33533 -14.27778 -14.09763 -13.75942 -13.64312 -13.42804 -13.19239 -13.14994 -12.93017 -12.66178 -12.60801 -12.28411 -12.23205 -11.84654 -11.74271 -11.52643 -11.26882 -11.10549 -10.85089 -10.42384 -9.79190 -9.31791 -8.38693 -6.42414 1.25087 1.30996 1.38669 1.47820 1.79861 2.25286 2.32976 3.03696 3.59263 3.71568 3.85504 4.09040 4.28296 4.31996 4.40562 4.46812 4.49841 4.55528 4.62175 4.67062 4.72522 4.78792 4.84230 4.94144 5.03008 5.04815 5.12250 5.12753 5.17208 5.21358 5.27427 5.33739 5.48495 5.53775 5.81954 5.84422 6.11943 6.15907 6.62986 6.79169 7.22829 7.42081 8.76601 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.032319 B = 0.006374 C = 0.006219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.167685 B = 4391.790068 C = 4501.478303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.223 3.777 3 H 0.034 0.966 4 C -0.519 4.519 5 H 0.055 0.945 6 C 0.029 3.971 7 N -0.935 5.935 8 Si 0.923 3.077 9 H -0.287 1.287 10 H -0.276 1.276 11 H -0.247 1.247 12 N -0.597 5.597 13 C 0.079 3.921 14 C 0.504 3.496 15 O -0.602 6.602 16 C -0.096 4.096 17 H 0.105 0.895 18 C -0.077 4.077 19 C -0.164 4.164 20 C -0.147 4.147 21 C -0.081 4.081 22 C -0.076 4.076 23 H 0.083 0.917 24 C -0.145 4.145 25 H 0.045 0.955 26 H 0.048 0.952 27 H 0.063 0.937 28 H 0.268 0.732 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.115 0.885 35 H 0.126 0.874 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.058 0.942 39 H 0.026 0.974 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.408 -3.970 19.704 20.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.121 3.879 3 H 0.052 0.948 4 C -0.558 4.558 5 H 0.073 0.927 6 C -0.171 4.171 7 N -0.574 5.574 8 Si 0.749 3.251 9 H -0.213 1.213 10 H -0.201 1.201 11 H -0.171 1.171 12 N -0.327 5.327 13 C -0.063 4.063 14 C 0.293 3.707 15 O -0.484 6.484 16 C -0.117 4.117 17 H 0.123 0.877 18 C -0.115 4.115 19 C -0.182 4.182 20 C -0.165 4.165 21 C -0.118 4.118 22 C -0.095 4.095 23 H 0.101 0.899 24 C -0.203 4.203 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.133 0.867 35 H 0.144 0.856 36 H 0.114 0.886 37 H 0.110 0.890 38 H 0.077 0.923 39 H 0.045 0.955 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.269 -3.362 19.418 19.748 hybrid contribution 0.315 1.020 -1.045 1.494 sum -0.954 -2.342 18.372 18.546 Atomic orbital electron populations 1.22094 0.95970 1.01859 0.99845 1.19011 0.92550 0.93242 0.83146 0.94778 1.21378 1.43512 0.94984 0.95897 0.92673 1.25609 0.93999 1.02035 0.95449 1.69983 1.45144 1.37829 1.04465 0.86131 0.79769 0.81707 0.77535 1.21337 1.20128 1.17096 1.48236 1.49385 1.13337 1.21779 1.21882 1.01382 0.80688 1.02330 1.21258 0.78092 0.87192 0.84133 1.90580 1.62636 1.18045 1.77162 1.21505 0.97178 1.00168 0.92847 0.87725 1.20337 0.95410 0.99837 0.95875 1.21969 1.00437 1.00439 0.95338 1.22259 0.96028 0.98490 0.99712 1.20561 0.93913 0.99204 0.98088 1.21115 0.97319 0.97073 0.94001 0.89887 1.21861 1.02063 0.95961 1.00379 0.93606 0.93325 0.91760 0.92281 0.90626 0.91769 0.89890 0.91386 0.92580 0.86724 0.85632 0.88622 0.88997 0.92348 0.95488 0.90714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.74 9.00 71.98 0.65 -5.09 16 2 C 0.22 10.82 2.22 44.24 0.10 10.92 16 3 H 0.03 1.85 4.42 -2.39 -0.01 1.84 16 4 C -0.52 -29.05 8.70 25.60 0.22 -28.83 16 5 H 0.06 3.28 6.89 -2.91 -0.02 3.26 16 6 C 0.03 1.67 5.47 84.65 0.46 2.13 16 7 N -0.93 -57.72 13.96 21.45 0.30 -57.42 16 8 Si 0.92 46.70 26.47 68.60 1.82 48.51 16 9 H -0.29 -15.13 7.11 99.48 0.71 -14.42 16 10 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 11 H -0.25 -11.75 6.31 99.48 0.63 -11.12 16 12 N -0.60 -24.51 2.75 -826.82 -2.28 -26.78 16 13 C 0.08 2.45 8.83 127.77 1.13 3.58 16 14 C 0.50 20.40 6.09 87.66 0.53 20.93 16 15 O -0.60 -29.60 14.78 -3.06 -0.05 -29.64 16 16 C -0.10 -2.79 1.65 -11.26 -0.02 -2.81 16 17 H 0.10 2.75 6.29 -2.38 -0.01 2.73 16 18 C -0.08 -2.23 4.55 29.80 0.14 -2.09 16 19 C -0.16 -3.48 9.15 27.04 0.25 -3.23 16 20 C -0.15 -2.49 9.41 27.04 0.25 -2.24 16 21 C -0.08 -1.27 5.56 29.66 0.16 -1.10 16 22 C -0.08 -1.71 2.62 -10.66 -0.03 -1.74 16 23 H 0.08 1.77 7.17 -2.39 -0.02 1.75 16 24 C -0.15 -3.60 8.36 71.98 0.60 -3.00 16 25 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 26 H 0.05 2.04 7.05 -2.39 -0.02 2.02 16 27 H 0.06 2.43 7.85 -2.39 -0.02 2.41 16 28 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 29 H 0.08 1.84 7.70 -2.39 -0.02 1.82 16 30 H 0.06 2.22 6.62 -2.39 -0.02 2.20 16 31 H 0.08 2.11 6.02 -2.38 -0.01 2.10 16 32 H 0.07 2.25 6.26 -2.39 -0.01 2.24 16 33 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.11 2.11 8.06 -2.91 -0.02 2.09 16 35 H 0.13 1.56 8.06 -2.91 -0.02 1.54 16 36 H 0.10 1.15 8.11 -2.38 -0.02 1.13 16 37 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 38 H 0.06 1.47 5.69 -2.39 -0.01 1.45 16 39 H 0.03 0.84 7.17 -2.39 -0.02 0.82 16 40 H 0.07 1.45 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -70.98 304.32 5.18 -65.80 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: 0.94 Total: 12.10 kcal Atomic # 6 Polarization: -17.02 SS G_CDS: 4.45 Total: -12.57 kcal Atomic # 7 Polarization: -82.22 SS G_CDS: -1.98 Total: -84.20 kcal Atomic # 8 Polarization: -29.60 SS G_CDS: -0.05 Total: -29.64 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 1.82 Total: 48.51 kcal Total: -70.98 5.18 -65.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342547311.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.407 kcal (2) G-P(sol) polarization free energy of solvation -70.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds