Wall clock time and date at job start Sun Mar 29 2020 23:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 110.01651 * 2 1 4 4 C 1.53871 * 110.03231 * 238.60462 * 2 1 3 5 5 C 1.54272 * 106.59877 * 240.66598 * 4 2 1 6 6 C 1.54894 * 104.19396 * 336.39177 * 5 4 2 7 7 C 1.54468 * 110.15997 * 121.25272 * 2 1 3 8 8 H 1.08998 * 110.40311 * 24.17009 * 7 2 1 9 9 C 1.53000 * 110.66323 * 261.45861 * 7 2 1 10 10 C 1.50695 * 109.47299 * 178.78484 * 9 7 2 11 11 O 1.21291 * 119.99845 * 0.02562 * 10 9 7 12 12 N 1.34775 * 119.99947 * 179.97438 * 10 9 7 13 13 C 1.37101 * 119.99668 * 180.02562 * 12 10 9 14 14 H 1.08008 * 119.99616 * 222.43544 * 13 12 10 15 15 C 1.38943 * 120.00129 * 42.44317 * 13 12 10 16 16 N 1.31409 * 120.00041 * 19.29003 * 15 13 12 17 17 Si 1.86801 * 120.00156 * 199.28770 * 15 13 12 18 18 H 1.48504 * 109.46895 * 60.00083 * 17 15 13 19 19 H 1.48498 * 109.47197 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47057 * 300.00117 * 17 15 13 21 21 C 1.46500 * 120.00100 * 0.02562 * 12 10 9 22 22 C 1.53005 * 117.49884 * 183.38939 * 21 12 10 23 23 C 1.52999 * 117.50315 * 114.72768 * 21 12 10 24 24 H 1.08997 * 109.47442 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47108 * 299.94042 * 1 2 3 26 26 H 1.08999 * 109.47208 * 59.94302 * 1 2 3 27 27 H 1.08994 * 110.03286 * 121.38270 * 4 2 1 28 28 H 1.09001 * 110.03508 * 359.95412 * 4 2 1 29 29 H 1.08993 * 110.48493 * 217.71060 * 5 4 2 30 30 H 1.08997 * 110.59539 * 95.12379 * 5 4 2 31 31 H 1.08996 * 110.75040 * 156.25360 * 6 5 4 32 32 H 1.09003 * 110.75180 * 279.44076 * 6 5 4 33 33 H 1.09004 * 109.47403 * 298.79182 * 9 7 2 34 34 H 1.09005 * 109.47041 * 58.78511 * 9 7 2 35 35 H 0.97001 * 120.00176 * 174.74301 * 16 15 13 36 36 H 1.09003 * 115.54598 * 329.05030 * 21 12 10 37 37 H 1.08995 * 117.49861 * 359.97438 * 22 21 12 38 38 H 1.09003 * 117.49839 * 145.01676 * 22 21 12 39 39 H 1.08997 * 117.49483 * 214.97884 * 23 21 12 40 40 H 1.08997 * 117.49663 * 359.97438 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0241 0.0000 4 6 2.0571 -0.7531 -1.2340 5 6 2.8885 -1.9397 -0.7042 6 6 3.3150 -1.4996 0.7184 7 6 2.0624 -0.7523 1.2396 8 1 1.3184 -1.4616 1.6022 9 6 2.4480 0.2330 2.3447 10 6 2.9349 -0.5293 3.5500 11 8 2.9704 -1.7415 3.5272 12 7 3.3318 0.1359 4.6530 13 6 3.7752 -0.5577 5.7493 14 1 3.4663 -0.2570 6.7397 15 6 4.6219 -1.6472 5.5864 16 7 5.2971 -1.7932 4.4685 17 14 4.8006 -2.9044 6.9564 18 1 3.4783 -3.5172 7.2414 19 1 5.7554 -3.9615 6.5368 20 1 5.3096 -2.2342 8.1799 21 6 3.2895 1.6000 4.6803 22 6 3.8273 2.2992 5.9305 23 6 2.3206 2.2606 5.6630 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5129 0.8905 26 1 -0.3633 0.5147 -0.8895 27 1 2.6860 -0.0945 -1.8329 28 1 1.2229 -1.1193 -1.8324 29 1 3.7646 -2.1021 -1.3320 30 1 2.2808 -2.8433 -0.6578 31 1 3.5346 -2.3666 1.3413 32 1 4.1739 -0.8298 0.6742 33 1 3.2405 0.8898 1.9857 34 1 1.5782 0.8298 2.6193 35 1 5.9450 -2.5101 4.3833 36 1 3.4472 2.0928 3.7209 37 1 4.2122 1.6697 6.7328 38 1 4.3385 3.2521 5.7936 39 1 1.8412 3.1882 5.3502 40 1 1.7143 1.6059 6.2889 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346516670.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:11:33 Heat of formation + Delta-G solvation = -20.842172 kcal Electronic energy + Delta-G solvation = -19473.365575 eV Core-core repulsion = 16674.440303 eV Total energy + Delta-G solvation = -2798.925272 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.98135 -37.74818 -35.85624 -32.77323 -31.17828 -30.79936 -30.33530 -26.21202 -24.86094 -23.49419 -21.66606 -21.07469 -20.17037 -19.28778 -18.72199 -16.23980 -15.98600 -15.09254 -14.69747 -14.46591 -14.15623 -13.94527 -13.46255 -13.25333 -12.73098 -12.68913 -12.49285 -11.93764 -11.58320 -11.37392 -11.03887 -10.85813 -10.79932 -10.57492 -10.50428 -10.39058 -10.27453 -10.14616 -10.06606 -9.95606 -9.87788 -9.84407 -9.66910 -8.63762 -7.81987 -6.92926 -6.03360 -3.76467 3.33893 3.40834 3.44502 4.23888 4.33879 4.83909 4.84545 4.97942 5.05942 5.12204 5.37341 5.58476 5.63023 5.68301 5.74026 5.77928 5.81222 5.85097 5.95389 6.00330 6.10561 6.17638 6.21157 6.21896 6.25404 6.30849 6.39908 6.43067 6.51992 6.61229 6.67468 6.76554 6.82459 6.96455 7.06647 7.15256 7.68108 8.34842 9.15881 9.27631 9.77560 10.43041 11.05501 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.020879 B = 0.007702 C = 0.006113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.726700 B = 3634.324991 C = 4579.672459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.097 4.097 3 H 0.067 0.933 4 C -0.118 4.118 5 C -0.127 4.127 6 C -0.108 4.108 7 C -0.063 4.063 8 H 0.075 0.925 9 C -0.125 4.125 10 C 0.483 3.517 11 O -0.529 6.529 12 N -0.433 5.433 13 C -0.350 4.350 14 H 0.074 0.926 15 C 0.075 3.925 16 N -0.830 5.830 17 Si 0.910 3.090 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.280 1.280 21 C 0.079 3.921 22 C -0.176 4.176 23 C -0.209 4.209 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.047 0.953 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.262 0.738 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.393 6.030 -7.238 10.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.115 4.115 3 H 0.085 0.915 4 C -0.155 4.155 5 C -0.164 4.164 6 C -0.146 4.146 7 C -0.082 4.082 8 H 0.093 0.907 9 C -0.166 4.166 10 C 0.271 3.729 11 O -0.406 6.406 12 N -0.154 5.154 13 C -0.477 4.477 14 H 0.092 0.908 15 C -0.136 4.136 16 N -0.463 5.463 17 Si 0.738 3.262 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.205 1.205 21 C -0.028 4.028 22 C -0.214 4.214 23 C -0.248 4.248 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.102 0.898 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.119 0.881 37 H 0.124 0.876 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.278 5.208 -7.400 10.476 hybrid contribution 0.259 -0.363 0.683 0.815 sum -5.019 4.845 -6.718 9.685 Atomic orbital electron populations 1.21859 0.95565 1.01498 1.00960 1.21886 0.95162 0.99358 0.95129 0.91454 1.22192 0.98987 0.97267 0.97070 1.22384 0.98878 0.97562 0.97610 1.22458 0.96741 1.01198 0.94187 1.21730 0.97740 0.96150 0.92555 0.90651 1.21658 1.00682 0.98592 0.95623 1.19791 0.80958 0.88007 0.84165 1.90493 1.54799 1.13888 1.81417 1.42831 1.57710 1.00588 1.14269 1.18774 1.30076 1.12530 0.86324 0.90811 1.25161 0.93952 0.98320 0.96141 1.69826 1.20329 1.30474 1.25686 0.86315 0.77954 0.81003 0.80938 1.20111 1.21289 1.20548 1.21657 1.02428 0.85171 0.93526 1.23071 0.95479 1.01084 1.01737 1.23319 0.93171 1.02158 1.06194 0.92818 0.92795 0.93378 0.92493 0.92423 0.92509 0.92223 0.89841 0.92362 0.91165 0.91266 0.92747 0.88141 0.87570 0.89911 0.89912 0.89190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 8.85 37.16 0.33 -1.43 16 2 C -0.10 -1.37 3.08 -89.40 -0.28 -1.64 16 3 H 0.07 0.92 7.84 -51.93 -0.41 0.51 16 4 C -0.12 -1.55 6.46 -25.61 -0.17 -1.71 16 5 C -0.13 -1.90 6.83 -25.07 -0.17 -2.07 16 6 C -0.11 -2.04 5.62 -24.73 -0.14 -2.18 16 7 C -0.06 -1.12 2.02 -88.85 -0.18 -1.30 16 8 H 0.08 1.47 7.74 -51.93 -0.40 1.07 16 9 C -0.12 -2.42 3.69 -27.89 -0.10 -2.53 16 10 C 0.48 12.16 6.76 -10.99 -0.07 12.09 16 11 O -0.53 -15.22 12.13 5.55 0.07 -15.15 16 12 N -0.43 -10.91 2.85 -107.73 -0.31 -11.21 16 13 C -0.35 -9.65 8.00 -14.93 -0.12 -9.77 16 14 H 0.07 1.98 7.18 -52.48 -0.38 1.60 16 15 C 0.07 2.12 4.35 -17.47 -0.08 2.04 16 16 N -0.83 -24.55 11.64 55.50 0.65 -23.90 16 17 Si 0.91 22.24 29.60 -169.99 -5.03 17.20 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 C 0.08 1.60 5.87 -67.93 -0.40 1.20 16 22 C -0.18 -3.23 9.80 -26.69 -0.26 -3.50 16 23 C -0.21 -3.64 10.36 -26.69 -0.28 -3.92 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.68 7.67 -51.93 -0.40 0.29 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.08 1.88 7.06 -51.93 -0.37 1.51 16 32 H 0.06 1.13 8.02 -51.93 -0.42 0.71 16 33 H 0.07 1.30 7.52 -51.93 -0.39 0.91 16 34 H 0.07 1.21 8.11 -51.93 -0.42 0.79 16 35 H 0.26 7.50 8.32 -40.82 -0.34 7.16 16 36 H 0.10 1.84 6.95 -51.93 -0.36 1.47 16 37 H 0.11 2.17 6.68 -51.93 -0.35 1.82 16 38 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 40 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 LS Contribution 315.57 15.07 4.76 4.76 Total: -1.00 -31.15 315.57 -8.61 -39.75 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -6.83 Total: 3.28 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: -1.91 Total: -14.73 kcal Atomic # 7 Polarization: -35.45 SS G_CDS: 0.34 Total: -35.12 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: 0.07 Total: -15.15 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.03 Total: 17.20 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.15 -8.61 -39.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346516670.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.912 kcal (2) G-P(sol) polarization free energy of solvation -31.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds