Wall clock time and date at job start Sun Mar 29 2020 22:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50697 * 119.99913 * 2 1 4 4 N 1.46497 * 109.47531 * 124.61635 * 3 2 1 5 5 C 1.46503 * 120.00022 * 95.07218 * 4 3 2 6 6 C 1.52998 * 109.46760 * 84.31998 * 5 4 3 7 7 C 1.52999 * 109.47303 * 65.72802 * 6 5 4 8 8 C 1.52998 * 109.47303 * 180.02562 * 7 6 5 9 9 C 1.53006 * 109.46989 * 300.00085 * 8 7 6 10 10 C 1.53004 * 109.46860 * 59.99920 * 9 8 7 11 11 C 1.52998 * 109.47385 * 299.99838 * 10 9 8 12 12 C 1.34777 * 119.99810 * 275.08191 * 4 3 2 13 13 O 1.21684 * 119.99894 * 179.97438 * 12 4 3 14 14 C 1.46381 * 120.00171 * 359.97438 * 12 4 3 15 15 H 1.08000 * 119.99965 * 0.02562 * 14 12 4 16 16 C 1.40045 * 119.99774 * 180.02562 * 14 12 4 17 17 N 1.30677 * 120.00322 * 359.97438 * 16 14 12 18 18 Si 1.86797 * 119.99771 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47374 * 89.99847 * 18 16 14 20 20 H 1.48502 * 109.47111 * 210.00272 * 18 16 14 21 21 H 1.48500 * 109.46946 * 329.99752 * 18 16 14 22 22 H 1.07997 * 120.00293 * 359.97438 * 1 2 3 23 23 H 1.08004 * 119.99775 * 180.02562 * 1 2 3 24 24 H 1.07997 * 120.00000 * 180.02562 * 2 1 3 25 25 H 1.09003 * 109.47111 * 4.61489 * 3 2 1 26 26 H 1.08998 * 109.47171 * 244.61874 * 3 2 1 27 27 H 1.08998 * 109.47053 * 324.32324 * 5 4 3 28 28 H 1.08996 * 109.47021 * 204.32158 * 5 4 3 29 29 H 1.08998 * 109.47109 * 305.73041 * 6 5 4 30 30 H 1.09003 * 109.47023 * 300.00443 * 7 6 5 31 31 H 1.08998 * 109.46843 * 60.00076 * 7 6 5 32 32 H 1.08998 * 109.47219 * 180.02562 * 8 7 6 33 33 H 1.08998 * 109.47109 * 60.00239 * 8 7 6 34 34 H 1.08998 * 109.47321 * 300.00024 * 9 8 7 35 35 H 1.08996 * 109.47003 * 180.02562 * 9 8 7 36 36 H 1.09003 * 109.46716 * 179.97438 * 10 9 8 37 37 H 1.08998 * 109.47068 * 59.99950 * 10 9 8 38 38 H 1.08998 * 109.47109 * 300.00087 * 11 10 9 39 39 H 1.08993 * 109.47104 * 180.02562 * 11 10 9 40 40 H 0.96996 * 120.00160 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9872 1.3358 1.1367 5 6 4.3843 0.9333 0.9563 6 6 5.1942 2.1222 0.4353 7 6 5.2393 3.2162 1.5039 8 6 6.0487 4.4053 0.9826 9 6 7.4730 3.9499 0.6584 10 6 7.4278 2.8559 -0.4102 11 6 6.6184 1.6668 0.1111 12 6 2.5517 1.7341 2.3483 13 8 3.3188 1.7592 3.2926 14 6 1.1559 2.1366 2.5284 15 1 0.4749 2.1139 1.6905 16 6 0.7035 2.5509 3.7874 17 7 1.5273 2.5778 4.8014 18 14 -1.0779 3.0638 4.0174 19 1 -1.8901 1.8781 4.3911 20 1 -1.1645 4.0827 5.0943 21 1 -1.5951 3.6385 2.7496 22 1 -0.5400 0.9353 0.0004 23 1 -0.5400 -0.9354 0.0004 24 1 1.8500 -0.9353 -0.0004 25 1 1.3581 2.1319 0.0827 26 1 2.6267 1.3995 -0.9284 27 1 4.4369 0.1152 0.2381 28 1 4.7940 0.6052 1.9115 29 1 4.7245 2.5145 -0.4667 30 1 4.2247 3.5409 1.7345 31 1 5.7091 2.8239 2.4058 32 1 6.0812 5.1845 1.7441 33 1 5.5785 4.7975 0.0808 34 1 7.9432 3.5578 1.5602 35 1 8.0498 4.7972 0.2875 36 1 8.4425 2.5318 -0.6415 37 1 6.9576 3.2481 -1.3120 38 1 7.0886 1.2746 1.0128 39 1 6.5867 0.8873 -0.6501 40 1 1.2139 2.8645 5.6734 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356093053.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:42:40 Heat of formation + Delta-G solvation = -61.921524 kcal Electronic energy + Delta-G solvation = -19386.569179 eV Core-core repulsion = 16585.862573 eV Total energy + Delta-G solvation = -2800.706606 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.38227 -38.74646 -36.46347 -34.76497 -33.90634 -31.97317 -31.50326 -28.65848 -27.10310 -25.81797 -23.36644 -22.49220 -21.12785 -20.67027 -20.30698 -18.37808 -17.62790 -16.52551 -16.34131 -16.07658 -15.54923 -15.10005 -15.04610 -14.78187 -14.65217 -14.23077 -13.80118 -13.32544 -13.19341 -12.98128 -12.94788 -12.84300 -12.63305 -12.45729 -12.14051 -12.02012 -11.96357 -11.88874 -11.72534 -11.32339 -11.02711 -10.89055 -10.81632 -10.19336 -9.64193 -8.95888 -8.22029 -6.73963 1.38018 1.39294 1.51654 1.53328 2.25566 2.54033 3.04230 3.69387 3.80338 3.94288 3.94784 4.21193 4.26581 4.36049 4.45305 4.53984 4.56664 4.62028 4.66440 4.69463 4.81081 4.83591 4.92419 4.97735 5.09853 5.18962 5.22981 5.30346 5.34162 5.37725 5.41993 5.46731 5.57839 5.65801 5.82758 5.87056 6.04890 6.23068 6.54481 6.95827 7.53416 8.57962 8.77423 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.022021 B = 0.007171 C = 0.005909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.191740 B = 3903.508189 C = 4737.308724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.173 4.173 3 C 0.154 3.846 4 N -0.638 5.638 5 C 0.126 3.874 6 C -0.088 4.088 7 C -0.093 4.093 8 C -0.115 4.115 9 C -0.115 4.115 10 C -0.110 4.110 11 C -0.107 4.107 12 C 0.549 3.451 13 O -0.623 6.623 14 C -0.560 4.560 15 H 0.088 0.912 16 C 0.030 3.970 17 N -0.823 5.823 18 Si 0.982 3.018 19 H -0.263 1.263 20 H -0.277 1.277 21 H -0.248 1.248 22 H 0.094 0.906 23 H 0.108 0.892 24 H 0.104 0.896 25 H 0.065 0.935 26 H 0.091 0.909 27 H 0.080 0.920 28 H 0.037 0.963 29 H 0.072 0.928 30 H 0.021 0.979 31 H 0.026 0.974 32 H 0.046 0.954 33 H 0.066 0.934 34 H 0.050 0.950 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.049 0.951 39 H 0.080 0.920 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.636 -0.360 -13.212 14.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.192 4.192 3 C 0.030 3.970 4 N -0.373 5.373 5 C 0.003 3.997 6 C -0.107 4.107 7 C -0.131 4.131 8 C -0.152 4.152 9 C -0.152 4.152 10 C -0.148 4.148 11 C -0.145 4.145 12 C 0.354 3.646 13 O -0.509 6.509 14 C -0.597 4.597 15 H 0.106 0.894 16 C -0.184 4.184 17 N -0.453 5.453 18 Si 0.803 3.197 19 H -0.188 1.188 20 H -0.202 1.202 21 H -0.171 1.171 22 H 0.113 0.887 23 H 0.126 0.874 24 H 0.122 0.878 25 H 0.083 0.917 26 H 0.109 0.891 27 H 0.099 0.901 28 H 0.056 0.944 29 H 0.090 0.910 30 H 0.040 0.960 31 H 0.044 0.956 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.068 0.932 39 H 0.099 0.901 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.107 -0.310 -12.531 13.536 hybrid contribution -0.873 0.136 0.929 1.282 sum 4.234 -0.173 -11.602 12.352 Atomic orbital electron populations 1.23874 0.95742 1.02112 1.00040 1.23362 0.96687 0.98843 1.00336 1.20418 0.92364 0.95160 0.89014 1.47884 1.08981 1.70737 1.09704 1.21246 0.82519 0.96343 0.99600 1.21458 0.96417 0.95266 0.97588 1.21277 0.98171 0.96392 0.97299 1.21529 0.96659 0.96654 1.00389 1.21525 0.95315 0.99221 0.99169 1.21490 1.00460 0.94815 0.97990 1.21514 0.93499 0.98595 1.00942 1.18447 0.89031 0.76510 0.80563 1.90552 1.58816 1.60089 1.41479 1.21494 0.94932 1.46665 0.96612 0.89353 1.26869 1.03565 0.92954 0.95034 1.70206 1.37690 1.36285 1.01157 0.85240 0.76734 0.78583 0.79187 1.18807 1.20192 1.17095 0.88728 0.87365 0.87773 0.91662 0.89132 0.90146 0.94434 0.90988 0.96033 0.95551 0.93492 0.91576 0.93121 0.90420 0.90211 0.91191 0.93248 0.90099 0.92086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.51 13.78 67.77 0.93 -4.58 16 2 C -0.17 -5.73 9.66 25.64 0.25 -5.49 16 3 C 0.15 5.53 5.52 85.63 0.47 6.01 16 4 N -0.64 -28.65 2.27 -831.26 -1.89 -30.54 16 5 C 0.13 4.92 4.93 86.38 0.43 5.35 16 6 C -0.09 -2.92 2.38 -10.79 -0.03 -2.95 16 7 C -0.09 -3.79 4.24 30.59 0.13 -3.66 16 8 C -0.11 -3.60 5.92 30.60 0.18 -3.42 16 9 C -0.11 -2.83 5.92 30.60 0.18 -2.65 16 10 C -0.11 -2.36 5.92 30.60 0.18 -2.17 16 11 C -0.11 -2.76 5.21 30.59 0.16 -2.60 16 12 C 0.55 31.50 6.26 86.36 0.54 32.04 16 13 O -0.62 -41.30 13.52 -4.30 -0.06 -41.36 16 14 C -0.56 -31.56 8.65 24.83 0.21 -31.34 16 15 H 0.09 4.49 5.22 -2.91 -0.02 4.47 16 16 C 0.03 1.70 5.50 85.30 0.47 2.17 16 17 N -0.82 -51.13 11.83 21.84 0.26 -50.87 16 18 Si 0.98 41.74 29.56 68.60 2.03 43.77 16 19 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 20 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 21 H -0.25 -9.72 7.11 99.48 0.71 -9.01 16 22 H 0.09 2.91 7.55 -2.91 -0.02 2.88 16 23 H 0.11 2.83 8.06 -2.91 -0.02 2.81 16 24 H 0.10 3.28 8.06 -2.91 -0.02 3.26 16 25 H 0.07 2.51 6.04 -2.39 -0.01 2.50 16 26 H 0.09 2.64 8.03 -2.39 -0.02 2.62 16 27 H 0.08 2.55 8.11 -2.39 -0.02 2.54 16 28 H 0.04 1.73 7.26 -2.39 -0.02 1.72 16 29 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.02 1.06 6.51 -2.39 -0.02 1.04 16 31 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.07 1.90 8.14 -2.39 -0.02 1.89 16 34 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.27 15.33 8.29 -92.71 -0.77 14.56 16 Total: -1.00 -73.72 316.95 5.44 -68.28 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: 0.99 Total: 24.01 kcal Atomic # 6 Polarization: -17.40 SS G_CDS: 4.11 Total: -13.28 kcal Atomic # 7 Polarization: -79.78 SS G_CDS: -1.63 Total: -81.41 kcal Atomic # 8 Polarization: -41.30 SS G_CDS: -0.06 Total: -41.36 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Total: -73.72 5.44 -68.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356093053.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.361 kcal (2) G-P(sol) polarization free energy of solvation -73.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds