Wall clock time and date at job start Sun Mar 29 2020 23:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50694 * 120.00230 * 2 1 4 4 N 1.46505 * 109.46873 * 123.97458 * 3 2 1 5 5 C 1.46506 * 119.99800 * 265.15510 * 4 3 2 6 6 C 1.50692 * 109.47272 * 270.00127 * 5 4 3 7 7 H 1.08000 * 120.00580 * 0.02562 * 6 5 4 8 8 C 1.37885 * 119.99788 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99700 * 180.02562 * 8 6 5 10 10 Si 1.86793 * 120.00016 * 359.97438 * 8 6 5 11 11 H 1.48499 * 109.47230 * 90.00291 * 10 8 6 12 12 H 1.48497 * 109.47495 * 210.00002 * 10 8 6 13 13 H 1.48505 * 109.47277 * 330.00273 * 10 8 6 14 14 C 1.34774 * 120.00172 * 85.15751 * 4 3 2 15 15 O 1.21278 * 119.99648 * 4.81461 * 14 4 3 16 16 C 1.50697 * 119.99971 * 184.81010 * 14 4 3 17 17 H 1.09000 * 110.01864 * 32.37041 * 16 14 4 18 18 C 1.54266 * 110.03160 * 270.98495 * 16 14 4 19 19 C 1.54887 * 104.31363 * 217.04165 * 18 16 14 20 20 C 1.55236 * 102.58800 * 37.92730 * 19 18 16 21 21 H 1.08999 * 110.46500 * 80.77790 * 20 19 18 22 22 C 1.53001 * 110.58062 * 203.34001 * 20 19 18 23 23 C 1.53872 * 110.03112 * 153.82043 * 16 14 4 24 24 H 1.07999 * 120.00574 * 179.97438 * 1 2 3 25 25 H 1.08004 * 119.99683 * 359.97438 * 1 2 3 26 26 H 1.07997 * 119.99647 * 180.02562 * 2 1 3 27 27 H 1.09008 * 109.47181 * 3.97636 * 3 2 1 28 28 H 1.09004 * 109.47537 * 243.97579 * 3 2 1 29 29 H 1.09003 * 109.47147 * 30.00475 * 5 4 3 30 30 H 1.08999 * 109.46931 * 149.99419 * 5 4 3 31 31 H 0.97005 * 119.99839 * 179.97438 * 9 8 6 32 32 H 1.09004 * 110.48718 * 335.78282 * 18 16 14 33 33 H 1.08998 * 110.48980 * 98.29208 * 18 16 14 34 34 H 1.09003 * 110.75764 * 156.32407 * 19 18 16 35 35 H 1.09006 * 110.75728 * 279.69188 * 19 18 16 36 36 H 1.09001 * 109.46753 * 174.88093 * 22 20 19 37 37 H 1.08996 * 109.47426 * 294.87378 * 22 20 19 38 38 H 1.08999 * 109.47193 * 54.87914 * 22 20 19 39 39 H 1.09004 * 110.02767 * 238.56741 * 23 16 14 40 40 H 1.08994 * 110.03330 * 359.94560 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9761 1.3419 1.1455 5 6 2.5577 1.9821 2.3951 6 6 2.9394 3.4395 2.3652 7 1 3.4430 3.8484 1.5016 8 6 2.6458 4.2513 3.4404 9 7 2.9785 5.5234 3.4141 10 14 1.7743 3.5444 4.9337 11 1 2.7812 3.0442 5.9038 12 1 0.9529 4.6027 5.5745 13 1 0.8959 2.4244 4.5102 14 6 4.2006 0.7870 1.0497 15 8 4.5802 0.3349 -0.0097 16 6 5.0979 0.7284 2.2590 17 1 4.4991 0.6173 3.1629 18 6 5.9525 2.0098 2.3454 19 6 7.3254 1.5199 2.8689 20 6 7.4992 0.1598 2.1410 21 1 7.8563 0.3152 1.1230 22 6 8.4627 -0.7440 2.9130 23 6 6.0814 -0.4478 2.1289 24 1 -0.5401 -0.9352 -0.0004 25 1 -0.5400 0.9354 0.0004 26 1 1.8499 -0.9353 -0.0004 27 1 1.3573 2.1324 0.0713 28 1 2.6357 1.3943 -0.9235 29 1 1.4771 1.8917 2.5055 30 1 3.0508 1.4944 3.2360 31 1 2.7717 6.0945 4.1704 32 1 6.0598 2.4640 1.3604 33 1 5.5083 2.7182 3.0447 34 1 8.1165 2.2152 2.5879 35 1 7.2991 1.3793 3.9495 36 1 8.5014 -1.7240 2.4373 37 1 9.4580 -0.2998 2.9111 38 1 8.1150 -0.8523 3.9403 39 1 5.9605 -1.1303 2.9703 40 1 5.9090 -0.9768 1.1917 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359419413.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:16:04 Heat of formation + Delta-G solvation = -34.417013 kcal Electronic energy + Delta-G solvation = -19303.521881 eV Core-core repulsion = 16504.007959 eV Total energy + Delta-G solvation = -2799.513921 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.71430 -37.24730 -35.43693 -33.53032 -32.22117 -31.00700 -28.54205 -28.12425 -26.07999 -24.43027 -22.53674 -20.91980 -19.80360 -19.51128 -17.84800 -16.97559 -16.69276 -15.77929 -15.01188 -14.70929 -14.35086 -14.17112 -13.60293 -13.26747 -13.04181 -12.78883 -12.70246 -12.39739 -12.02857 -11.68187 -11.56492 -11.16862 -11.06038 -10.95392 -10.73346 -10.66939 -10.48567 -10.37286 -10.28151 -10.10637 -10.02829 -9.61897 -9.26988 -8.88842 -8.68427 -7.76189 -6.21543 -4.22062 2.47983 3.16464 3.25109 3.26626 3.36566 3.97201 4.26266 4.92112 4.97290 5.07694 5.09218 5.24772 5.42638 5.50320 5.61864 5.69831 5.83725 5.86965 5.88997 5.98663 6.00584 6.11884 6.15742 6.20329 6.28920 6.29241 6.38226 6.45006 6.51895 6.66521 6.73433 6.83669 6.85611 6.93117 6.97270 7.37981 7.44977 8.14751 8.42200 8.83559 8.96286 9.38000 10.90914 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.014219 B = 0.009400 C = 0.006404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.784888 B = 2977.956610 C = 4371.333396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.155 4.155 3 C 0.143 3.857 4 N -0.588 5.588 5 C 0.208 3.792 6 C -0.535 4.535 7 H 0.079 0.921 8 C 0.077 3.923 9 N -0.890 5.890 10 Si 0.867 3.133 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.264 1.264 14 C 0.526 3.474 15 O -0.570 6.570 16 C -0.107 4.107 17 H 0.090 0.910 18 C -0.100 4.100 19 C -0.119 4.119 20 C -0.096 4.096 21 H 0.073 0.927 22 C -0.142 4.142 23 C -0.109 4.109 24 H 0.093 0.907 25 H 0.098 0.902 26 H 0.104 0.896 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.032 0.968 30 H 0.032 0.968 31 H 0.266 0.734 32 H 0.064 0.936 33 H 0.091 0.909 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.050 0.950 37 H 0.051 0.949 38 H 0.053 0.947 39 H 0.060 0.940 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.873 -10.227 -0.108 10.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.174 4.174 3 C 0.020 3.980 4 N -0.317 5.317 5 C 0.087 3.913 6 C -0.573 4.573 7 H 0.097 0.903 8 C -0.126 4.126 9 N -0.528 5.528 10 Si 0.693 3.307 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.189 1.189 14 C 0.314 3.686 15 O -0.451 6.451 16 C -0.128 4.128 17 H 0.108 0.892 18 C -0.138 4.138 19 C -0.157 4.157 20 C -0.115 4.115 21 H 0.091 0.909 22 C -0.199 4.199 23 C -0.147 4.147 24 H 0.111 0.889 25 H 0.116 0.884 26 H 0.122 0.878 27 H 0.103 0.897 28 H 0.099 0.901 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.109 0.891 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.037 -10.260 -0.536 10.713 hybrid contribution -0.664 -0.116 0.958 1.171 sum 2.374 -10.375 0.422 10.652 Atomic orbital electron populations 1.23786 0.95776 1.01576 1.02098 1.23417 0.96065 0.99424 0.98499 1.20420 0.92585 0.94606 0.90409 1.47917 1.13719 1.55332 1.14725 1.19861 0.95982 0.93968 0.81536 1.21352 1.39659 0.91611 1.04682 0.90313 1.24847 0.95088 0.94647 0.98060 1.69892 1.46581 1.04857 1.31456 0.86989 0.80574 0.79416 0.83676 1.19802 1.20922 1.18904 1.20479 0.81532 0.76621 0.89928 1.90565 1.74276 1.49913 1.30303 1.21858 0.96462 0.97426 0.97065 0.89152 1.22204 0.93450 0.95613 1.02544 1.22659 0.97485 0.95905 0.99644 1.22012 0.94879 0.95157 0.99421 0.90894 1.21792 0.98920 0.99167 1.00004 1.22195 0.93458 0.96651 1.02402 0.88892 0.88408 0.87808 0.89696 0.90100 0.95023 0.95041 0.92412 0.91695 0.89086 0.91801 0.91610 0.93059 0.93009 0.92791 0.92081 0.90424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.71 14.32 29.02 0.42 -2.29 16 2 C -0.15 -2.50 9.81 -36.03 -0.35 -2.85 16 3 C 0.14 2.65 5.84 -5.19 -0.03 2.62 16 4 N -0.59 -12.18 2.45 -176.43 -0.43 -12.61 16 5 C 0.21 4.58 4.09 -5.19 -0.02 4.56 16 6 C -0.53 -13.77 9.06 -34.44 -0.31 -14.08 16 7 H 0.08 2.29 8.06 -52.49 -0.42 1.86 16 8 C 0.08 2.04 5.47 -17.82 -0.10 1.94 16 9 N -0.89 -25.42 13.96 55.43 0.77 -24.65 16 10 Si 0.87 19.60 27.47 -169.99 -4.67 14.93 16 11 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 H -0.26 -5.72 6.54 56.52 0.37 -5.35 16 14 C 0.53 10.87 6.59 -10.99 -0.07 10.80 16 15 O -0.57 -12.78 15.23 5.56 0.08 -12.69 16 16 C -0.11 -1.94 2.58 -90.66 -0.23 -2.18 16 17 H 0.09 1.62 6.10 -51.93 -0.32 1.30 16 18 C -0.10 -1.84 6.07 -25.07 -0.15 -1.99 16 19 C -0.12 -1.78 6.36 -24.55 -0.16 -1.93 16 20 C -0.10 -1.36 3.46 -88.78 -0.31 -1.67 16 21 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 22 C -0.14 -1.62 9.13 37.16 0.34 -1.28 16 23 C -0.11 -1.71 5.90 -25.62 -0.15 -1.86 16 24 H 0.09 1.11 8.06 -52.49 -0.42 0.69 16 25 H 0.10 1.31 7.84 -52.48 -0.41 0.90 16 26 H 0.10 1.70 8.06 -52.49 -0.42 1.27 16 27 H 0.08 1.55 7.68 -51.92 -0.40 1.15 16 28 H 0.08 1.54 7.51 -51.93 -0.39 1.15 16 29 H 0.03 0.70 7.13 -51.93 -0.37 0.33 16 30 H 0.03 0.67 5.21 -51.93 -0.27 0.40 16 31 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 32 H 0.06 1.30 7.85 -51.93 -0.41 0.89 16 33 H 0.09 1.86 7.53 -51.93 -0.39 1.47 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.07 0.92 8.05 -51.93 -0.42 0.50 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.05 0.59 8.13 -51.93 -0.42 0.17 16 39 H 0.06 0.84 7.84 -51.93 -0.41 0.44 16 40 H 0.08 1.32 6.74 -51.93 -0.35 0.97 16 LS Contribution 321.18 15.07 4.84 4.84 Total: -1.00 -28.56 321.18 -7.21 -35.78 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -6.68 Total: 4.62 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: -1.13 Total: -10.22 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: 0.34 Total: -37.26 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: 0.08 Total: -12.69 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -4.67 Total: 14.93 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.56 -7.21 -35.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359419413.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.361 kcal (2) G-P(sol) polarization free energy of solvation -28.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds