Wall clock time and date at job start Sun Mar 29 2020 23:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 115.54633 * 2 1 4 4 C 1.53069 * 117.51137 * 214.28632 * 2 1 3 5 5 C 1.52999 * 117.50012 * 145.67526 * 2 1 3 6 6 H 1.08996 * 117.49697 * 215.00242 * 5 2 1 7 7 C 1.52997 * 117.49831 * 0.02562 * 5 2 1 8 8 C 1.50698 * 109.47111 * 184.91347 * 7 5 2 9 9 O 1.21296 * 119.99881 * 353.49651 * 8 7 5 10 10 N 1.34777 * 120.00028 * 173.22694 * 8 7 5 11 11 C 1.37099 * 120.00018 * 355.42158 * 10 8 7 12 12 H 1.08003 * 119.99416 * 228.74777 * 11 10 8 13 13 C 1.38945 * 120.00365 * 48.74494 * 11 10 8 14 14 N 1.31410 * 120.00344 * 205.92910 * 13 11 10 15 15 Si 1.86809 * 119.99707 * 25.93289 * 13 11 10 16 16 H 1.48501 * 109.46864 * 95.44586 * 15 13 11 17 17 H 1.48498 * 109.46755 * 215.44536 * 15 13 11 18 18 H 1.48501 * 109.46829 * 335.44751 * 15 13 11 19 19 C 1.46501 * 119.99946 * 175.41787 * 10 8 7 20 20 C 1.54270 * 110.03428 * 239.56825 * 19 10 8 21 21 C 1.54963 * 104.15849 * 217.13952 * 20 19 10 22 22 C 1.54887 * 102.78186 * 37.88220 * 21 20 19 23 23 C 1.53873 * 110.03289 * 122.34674 * 19 10 8 24 24 H 1.09002 * 109.46777 * 274.32225 * 1 2 3 25 25 H 1.09000 * 109.47311 * 34.32254 * 1 2 3 26 26 H 1.09002 * 109.46952 * 154.32532 * 1 2 3 27 27 H 1.09003 * 117.49316 * 145.03746 * 4 2 1 28 28 H 1.09003 * 117.51639 * 359.97438 * 4 2 1 29 29 H 1.09001 * 109.47454 * 64.91207 * 7 5 2 30 30 H 1.09004 * 109.46873 * 304.90766 * 7 5 2 31 31 H 0.97002 * 120.00138 * 179.97438 * 14 13 11 32 32 H 1.08997 * 110.01871 * 0.95517 * 19 10 8 33 33 H 1.09006 * 110.48240 * 335.78336 * 20 19 10 34 34 H 1.08994 * 110.48924 * 98.42507 * 20 19 10 35 35 H 1.09007 * 110.71772 * 279.57268 * 21 20 19 36 36 H 1.09000 * 110.76914 * 156.22169 * 21 20 19 37 37 H 1.09000 * 110.49057 * 203.40705 * 22 21 20 38 38 H 1.09007 * 110.59777 * 80.81703 * 22 21 20 39 39 H 1.08994 * 110.03617 * 238.57247 * 23 19 10 40 40 H 1.09004 * 110.03090 * 359.95352 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2371 -1.1217 -0.7648 5 6 2.2365 -1.1208 0.7653 6 1 3.1714 -0.8747 1.2688 7 6 1.3589 -2.1561 1.4714 8 6 2.2303 -3.0979 2.2619 9 8 3.4377 -3.0300 2.1680 10 7 1.6681 -4.0119 3.0773 11 6 0.3094 -4.0240 3.2601 12 1 -0.1007 -4.0669 4.2583 13 6 -0.5398 -3.9810 2.1613 14 7 -1.7531 -3.4923 2.2872 15 14 0.0431 -4.6183 0.5048 16 1 -0.3984 -6.0256 0.3326 17 1 -0.5343 -3.7822 -0.5781 18 1 1.5255 -4.5535 0.4434 19 6 2.5090 -4.9926 3.7684 20 6 2.0926 -6.4226 3.3660 21 6 2.2492 -7.2442 4.6705 22 6 1.7673 -6.2535 5.7593 23 6 2.3027 -4.8852 5.2894 24 1 -0.3633 0.0775 1.0248 25 1 -0.3634 0.8487 -0.5794 26 1 -0.3633 -0.9262 -0.4453 27 1 3.1724 -0.8759 -1.2678 28 1 1.6123 -1.8599 -1.2676 29 1 0.7939 -2.7203 0.7294 30 1 0.6685 -1.6484 2.1449 31 1 -2.3459 -3.4619 1.5200 32 1 3.5573 -4.8256 3.5210 33 1 1.0564 -6.4373 3.0281 34 1 2.7534 -6.8082 2.5897 35 1 3.2921 -7.5175 4.8313 36 1 1.6156 -8.1308 4.6473 37 1 2.1908 -6.5164 6.7287 38 1 0.6785 -6.2400 5.8107 39 1 3.2510 -4.6667 5.7803 40 1 1.5776 -4.1027 5.5135 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361886994.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:18:31 Heat of formation + Delta-G solvation = -28.889350 kcal Electronic energy + Delta-G solvation = -19797.075763 eV Core-core repulsion = 16997.801539 eV Total energy + Delta-G solvation = -2799.274224 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.22956 -39.18650 -38.05005 -36.06804 -33.75957 -31.08012 -29.54692 -29.28134 -28.27031 -26.44424 -23.00707 -21.90491 -21.46138 -21.11374 -20.08704 -18.99734 -17.57638 -17.50238 -16.85806 -16.23565 -15.80692 -15.67449 -15.03338 -14.99820 -14.74388 -14.18663 -14.05579 -13.98730 -13.45843 -13.33127 -12.99859 -12.73706 -12.54475 -12.48472 -12.31660 -12.10469 -11.91277 -11.87876 -11.71978 -11.48087 -11.39676 -10.98425 -10.83797 -10.72926 -10.42753 -9.47811 -8.56232 -6.19636 1.10275 1.21276 1.31062 1.84958 2.10948 2.59146 2.79318 2.90939 3.72636 3.77138 3.83181 3.87607 3.94597 4.14053 4.19772 4.39571 4.44178 4.57201 4.60679 4.69833 4.71383 4.73875 4.80219 4.86603 4.88967 4.93932 4.94603 5.00163 5.11733 5.14207 5.22295 5.26828 5.35700 5.41936 5.45230 5.55799 5.70154 5.91758 6.46290 6.95318 7.37772 7.82898 8.56885 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.024801 B = 0.008669 C = 0.007620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.725247 B = 3229.224962 C = 3673.875844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.131 4.131 3 H 0.131 0.869 4 C -0.179 4.179 5 C -0.158 4.158 6 H 0.104 0.896 7 C -0.084 4.084 8 C 0.482 3.518 9 O -0.617 6.617 10 N -0.470 5.470 11 C -0.338 4.338 12 H 0.082 0.918 13 C 0.062 3.938 14 N -0.873 5.873 15 Si 0.891 3.109 16 H -0.282 1.282 17 H -0.269 1.269 18 H -0.277 1.277 19 C 0.117 3.883 20 C -0.133 4.133 21 C -0.108 4.108 22 C -0.111 4.111 23 C -0.122 4.122 24 H 0.055 0.945 25 H 0.086 0.914 26 H 0.035 0.965 27 H 0.112 0.888 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.092 0.908 31 H 0.281 0.719 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.055 0.945 39 H 0.072 0.928 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.928 -0.066 -0.565 3.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.149 4.149 3 H 0.149 0.851 4 C -0.216 4.216 5 C -0.176 4.176 6 H 0.122 0.878 7 C -0.123 4.123 8 C 0.273 3.727 9 O -0.503 6.503 10 N -0.190 5.190 11 C -0.465 4.465 12 H 0.099 0.901 13 C -0.145 4.145 14 N -0.509 5.509 15 Si 0.718 3.282 16 H -0.209 1.209 17 H -0.194 1.194 18 H -0.203 1.203 19 C 0.014 3.986 20 C -0.172 4.172 21 C -0.146 4.146 22 C -0.148 4.148 23 C -0.160 4.160 24 H 0.074 0.926 25 H 0.105 0.895 26 H 0.054 0.946 27 H 0.131 0.869 28 H 0.095 0.905 29 H 0.079 0.921 30 H 0.110 0.890 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.074 0.926 39 H 0.090 0.910 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.300 0.005 -0.650 4.349 hybrid contribution -0.187 -0.476 -0.963 1.090 sum 4.113 -0.470 -1.613 4.443 Atomic orbital electron populations 1.21379 0.92788 1.01849 1.02112 1.22539 0.95460 0.94552 1.02373 0.85078 1.23218 1.03122 1.01874 0.93415 1.22156 1.00981 1.00030 0.94448 0.87762 1.21047 0.97228 0.95733 0.98267 1.20899 0.88011 0.81829 0.81996 1.90459 1.16076 1.73685 1.70125 1.43941 1.06706 1.26598 1.41791 1.18594 0.79117 1.54507 0.94303 0.90051 1.25772 0.94881 0.94410 0.99438 1.69823 1.08629 1.39372 1.33037 0.86711 0.79142 0.79093 0.83279 1.20917 1.19447 1.20263 1.21925 0.94464 0.88861 0.93348 1.22688 1.01188 0.94387 0.98906 1.22408 1.02004 0.97437 0.92753 1.22247 1.00351 0.93368 0.98883 1.22339 1.00950 0.98959 0.93770 0.92573 0.89530 0.94568 0.86922 0.90535 0.92128 0.89025 0.90901 0.91200 0.92296 0.92585 0.89921 0.90332 0.89470 0.92600 0.90965 0.92897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.79 9.20 71.98 0.66 -3.13 16 2 C -0.13 -4.02 6.41 -10.77 -0.07 -4.09 16 3 H 0.13 3.24 8.14 -2.39 -0.02 3.22 16 4 C -0.18 -5.97 9.83 30.62 0.30 -5.67 16 5 C -0.16 -6.14 5.36 -10.79 -0.06 -6.20 16 6 H 0.10 4.23 7.41 -2.39 -0.02 4.21 16 7 C -0.08 -3.84 2.99 29.85 0.09 -3.75 16 8 C 0.48 24.37 5.76 87.66 0.51 24.88 16 9 O -0.62 -32.94 14.99 -3.08 -0.05 -32.99 16 10 N -0.47 -22.99 1.94 -609.37 -1.18 -24.17 16 11 C -0.34 -17.41 7.45 84.04 0.63 -16.78 16 12 H 0.08 4.47 7.25 -2.91 -0.02 4.45 16 13 C 0.06 3.18 4.03 84.93 0.34 3.52 16 14 N -0.87 -46.31 13.96 21.66 0.30 -46.00 16 15 Si 0.89 42.49 24.10 68.60 1.65 44.14 16 16 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 17 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 18 H -0.28 -14.01 5.90 99.48 0.59 -13.43 16 19 C 0.12 4.97 3.29 45.72 0.15 5.12 16 20 C -0.13 -5.05 6.42 31.70 0.20 -4.85 16 21 C -0.11 -3.09 6.91 31.91 0.22 -2.87 16 22 C -0.11 -3.29 6.83 31.67 0.22 -3.07 16 23 C -0.12 -4.39 6.23 31.32 0.20 -4.20 16 24 H 0.06 1.83 7.84 -2.39 -0.02 1.81 16 25 H 0.09 2.06 8.14 -2.39 -0.02 2.05 16 26 H 0.04 1.22 7.90 -2.39 -0.02 1.20 16 27 H 0.11 3.20 8.14 -2.39 -0.02 3.18 16 28 H 0.08 2.69 7.94 -2.39 -0.02 2.67 16 29 H 0.06 2.86 2.53 -2.39 -0.01 2.85 16 30 H 0.09 4.38 7.24 -2.39 -0.02 4.36 16 31 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 32 H 0.07 3.11 6.95 -2.39 -0.02 3.09 16 33 H 0.06 2.52 6.97 -2.38 -0.02 2.51 16 34 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 36 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 39 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 40 H 0.05 2.14 6.83 -2.38 -0.02 2.13 16 Total: -1.00 -59.66 306.25 5.00 -54.66 By element: Atomic # 1 Polarization: 24.56 SS G_CDS: 0.89 Total: 25.45 kcal Atomic # 6 Polarization: -24.46 SS G_CDS: 3.38 Total: -21.08 kcal Atomic # 7 Polarization: -69.30 SS G_CDS: -0.88 Total: -70.18 kcal Atomic # 8 Polarization: -32.94 SS G_CDS: -0.05 Total: -32.99 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 1.65 Total: 44.14 kcal Total: -59.66 5.00 -54.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361886994.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.769 kcal (2) G-P(sol) polarization free energy of solvation -59.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds