Wall clock time and date at job start Sun Mar 29 2020 23:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 115.56368 * 2 1 4 4 C 1.52996 * 117.49903 * 145.69247 * 2 1 3 5 5 C 1.52994 * 60.00123 * 107.48668 * 4 2 1 6 6 H 1.08996 * 117.50280 * 107.51613 * 5 4 2 7 7 C 1.53005 * 117.49621 * 252.51008 * 5 4 2 8 8 C 1.50705 * 109.46989 * 243.60421 * 7 5 4 9 9 O 1.21289 * 119.99907 * 0.02562 * 8 7 5 10 10 N 1.34773 * 119.99774 * 179.97438 * 8 7 5 11 11 C 1.37102 * 119.99798 * 180.02562 * 10 8 7 12 12 H 1.08000 * 120.00152 * 137.56571 * 11 10 8 13 13 C 1.38950 * 119.99936 * 317.56496 * 11 10 8 14 14 N 1.31410 * 120.00094 * 339.86124 * 13 11 10 15 15 Si 1.86802 * 119.99804 * 159.86446 * 13 11 10 16 16 H 1.48503 * 109.47113 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47052 * 119.99991 * 15 13 11 18 18 H 1.48502 * 109.46938 * 239.99843 * 15 13 11 19 19 C 1.46496 * 120.00140 * 0.02562 * 10 8 7 20 20 C 1.54269 * 110.07250 * 119.90167 * 19 10 8 21 21 C 1.54888 * 104.19693 * 95.69738 * 20 19 10 22 22 C 1.54887 * 102.74887 * 37.94179 * 21 20 19 23 23 C 1.53874 * 110.03363 * 237.08892 * 19 10 8 24 24 H 1.08997 * 109.47145 * 205.69406 * 1 2 3 25 25 H 1.09001 * 109.46755 * 325.68295 * 1 2 3 26 26 H 1.08998 * 109.47211 * 85.68656 * 1 2 3 27 27 H 1.09009 * 117.50050 * 359.97438 * 4 2 1 28 28 H 1.09000 * 117.50174 * 214.98002 * 4 2 1 29 29 H 1.09001 * 109.46750 * 123.60880 * 7 5 4 30 30 H 1.09001 * 109.47181 * 3.60832 * 7 5 4 31 31 H 0.96997 * 119.99841 * 175.12417 * 14 13 11 32 32 H 1.09003 * 110.01746 * 358.48134 * 19 10 8 33 33 H 1.09003 * 110.48540 * 214.37206 * 20 19 10 34 34 H 1.08993 * 110.48642 * 337.01458 * 20 19 10 35 35 H 1.09004 * 110.75534 * 279.62532 * 21 20 19 36 36 H 1.08999 * 110.75617 * 156.25422 * 21 20 19 37 37 H 1.09006 * 110.48830 * 203.38015 * 22 21 20 38 38 H 1.09002 * 110.49135 * 80.73852 * 22 21 20 39 39 H 1.09006 * 110.03265 * 359.95286 * 23 19 10 40 40 H 1.09001 * 110.03070 * 121.37979 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2365 -1.1210 0.7649 5 6 2.2364 -1.1210 -0.7650 6 1 3.1715 -0.8756 -1.2684 7 6 1.3587 -2.1562 -1.4714 8 6 2.2299 -3.0967 -2.2637 9 8 3.4343 -2.9533 -2.2630 10 7 1.6708 -4.0976 -2.9722 11 6 2.4634 -4.9535 -3.6925 12 1 2.2597 -6.0141 -3.6843 13 6 3.5287 -4.4564 -4.4332 14 7 3.5566 -3.1876 -4.7742 15 14 4.9213 -5.5917 -4.9443 16 1 4.6537 -6.9621 -4.4386 17 1 5.0181 -5.6204 -6.4259 18 1 6.1994 -5.0951 -4.3743 19 6 0.2161 -4.2710 -2.9725 20 6 -0.3315 -4.1468 -4.4094 21 6 -0.4292 -5.6105 -4.9065 22 6 -0.9015 -6.3701 -3.6421 23 6 -0.1463 -5.6846 -2.4847 24 1 -0.3633 -0.9260 0.4455 25 1 -0.3633 0.8488 0.5794 26 1 -0.3633 0.0773 -1.0247 27 1 1.6112 -1.8584 1.2686 28 1 3.1715 -0.8753 1.2682 29 1 0.6673 -1.6481 -2.1437 30 1 0.7948 -2.7214 -0.7294 31 1 4.3324 -2.8247 -5.2295 32 1 -0.2489 -3.5235 -2.3298 33 1 -1.3163 -3.6796 -4.4033 34 1 0.3580 -3.5775 -5.0326 35 1 0.5453 -5.9732 -5.2336 36 1 -1.1638 -5.6984 -5.7069 37 1 -0.6279 -7.4234 -3.7052 38 1 -1.9784 -6.2620 -3.5119 39 1 0.7602 -6.2420 -2.2485 40 1 -0.7872 -5.6232 -1.6052 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361886999.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:18:36 Heat of formation + Delta-G solvation = -17.645266 kcal Electronic energy + Delta-G solvation = -19601.379630 eV Core-core repulsion = 16802.592986 eV Total energy + Delta-G solvation = -2798.786644 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.00633 -37.63079 -36.24897 -33.05482 -31.53593 -29.11396 -27.96708 -27.80088 -26.87751 -24.25657 -21.28666 -20.33074 -19.83742 -19.48350 -18.21140 -16.56517 -15.83049 -15.13751 -14.88496 -14.34289 -14.22998 -13.75095 -13.40907 -13.16065 -12.97291 -12.71543 -12.11054 -12.06393 -11.47661 -11.33803 -11.18974 -10.96933 -10.73868 -10.67545 -10.55901 -10.50750 -10.42949 -10.30381 -10.17568 -9.82389 -9.74356 -9.48276 -9.29423 -8.62433 -7.90316 -6.99094 -5.99209 -3.72560 3.36631 3.46529 3.47573 4.14930 4.31810 4.50142 4.91860 5.08295 5.28510 5.30173 5.31082 5.32361 5.49932 5.55374 5.61284 5.87903 5.95103 6.01545 6.04190 6.12397 6.14944 6.17162 6.23710 6.24701 6.28177 6.36265 6.45883 6.47602 6.54706 6.55819 6.58497 6.70266 6.92355 6.99329 7.06593 7.22963 7.74766 8.40162 9.19938 9.32091 9.81329 10.44730 11.08602 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.017211 B = 0.009055 C = 0.006570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.462821 B = 3091.446062 C = 4260.827002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.167 4.167 3 H 0.097 0.903 4 C -0.178 4.178 5 C -0.116 4.116 6 H 0.116 0.884 7 C -0.102 4.102 8 C 0.478 3.522 9 O -0.536 6.536 10 N -0.451 5.451 11 C -0.334 4.334 12 H 0.077 0.923 13 C 0.073 3.927 14 N -0.832 5.832 15 Si 0.897 3.103 16 H -0.273 1.273 17 H -0.288 1.288 18 H -0.283 1.283 19 C 0.130 3.870 20 C -0.123 4.123 21 C -0.117 4.117 22 C -0.119 4.119 23 C -0.131 4.131 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.059 0.941 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.260 0.740 32 H 0.065 0.935 33 H 0.048 0.952 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.048 0.952 37 H 0.055 0.945 38 H 0.053 0.947 39 H 0.075 0.925 40 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.276 1.173 5.332 10.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.185 4.185 3 H 0.115 0.885 4 C -0.215 4.215 5 C -0.135 4.135 6 H 0.134 0.866 7 C -0.143 4.143 8 C 0.265 3.735 9 O -0.414 6.414 10 N -0.173 5.173 11 C -0.461 4.461 12 H 0.094 0.906 13 C -0.136 4.136 14 N -0.467 5.467 15 Si 0.725 3.275 16 H -0.197 1.197 17 H -0.215 1.215 18 H -0.209 1.209 19 C 0.025 3.975 20 C -0.162 4.162 21 C -0.154 4.154 22 C -0.156 4.156 23 C -0.170 4.170 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.107 0.893 28 H 0.105 0.895 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.094 0.906 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.575 1.375 5.187 10.116 hybrid contribution 0.675 -0.424 -0.267 0.841 sum -7.900 0.951 4.920 9.355 Atomic orbital electron populations 1.21305 0.93364 1.01292 1.01611 1.22378 0.95052 0.94469 1.06602 0.88465 1.23083 1.01887 1.01197 0.95378 1.22169 1.01114 0.97440 0.92736 0.86632 1.21143 0.98031 0.96233 0.98855 1.19824 0.88454 0.83816 0.81369 1.90494 1.15166 1.71808 1.63887 1.43379 1.02368 1.28952 1.42634 1.18836 1.11727 0.89176 1.26350 0.90579 1.25086 0.99157 0.95518 0.93885 1.69894 1.28116 1.13745 1.34905 0.86392 0.82956 0.80821 0.77336 1.19749 1.21494 1.20899 1.21659 0.84860 0.95367 0.95663 1.22568 0.99140 0.97025 0.97431 1.22444 1.01252 0.95745 0.95969 1.22276 0.98506 0.98872 0.95979 1.22500 1.00184 0.97316 0.96977 0.92687 0.92866 0.92250 0.89326 0.89451 0.90607 0.91206 0.92962 0.91647 0.93284 0.90141 0.90140 0.93352 0.92620 0.92864 0.90584 0.93072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.47 9.19 37.16 0.34 -1.13 16 2 C -0.17 -2.42 6.41 -90.62 -0.58 -3.00 16 3 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 4 C -0.18 -2.75 9.82 -26.74 -0.26 -3.01 16 5 C -0.12 -2.14 5.42 -90.62 -0.49 -2.63 16 6 H 0.12 2.49 7.30 -51.93 -0.38 2.11 16 7 C -0.10 -1.98 3.38 -27.88 -0.09 -2.08 16 8 C 0.48 12.03 6.98 -10.98 -0.08 11.95 16 9 O -0.54 -15.75 13.22 5.55 0.07 -15.67 16 10 N -0.45 -10.97 2.40 -106.54 -0.26 -11.22 16 11 C -0.33 -8.93 6.98 -14.93 -0.10 -9.03 16 12 H 0.08 2.00 6.88 -52.49 -0.36 1.63 16 13 C 0.07 2.05 4.32 -17.47 -0.08 1.97 16 14 N -0.83 -24.59 11.71 55.50 0.65 -23.94 16 15 Si 0.90 22.10 29.60 -169.99 -5.03 17.07 16 16 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 18 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 19 C 0.13 2.53 3.26 -66.81 -0.22 2.31 16 20 C -0.12 -2.31 6.12 -25.07 -0.15 -2.46 16 21 C -0.12 -2.01 6.56 -24.74 -0.16 -2.18 16 22 C -0.12 -1.83 6.83 -25.08 -0.17 -2.00 16 23 C -0.13 -2.27 6.19 -25.61 -0.16 -2.43 16 24 H 0.05 0.66 7.90 -51.93 -0.41 0.25 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.74 7.83 -51.93 -0.41 0.33 16 27 H 0.09 1.28 7.94 -51.92 -0.41 0.87 16 28 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 29 H 0.08 1.41 7.45 -51.93 -0.39 1.02 16 30 H 0.07 1.21 7.50 -51.93 -0.39 0.83 16 31 H 0.26 7.49 8.32 -40.82 -0.34 7.15 16 32 H 0.07 1.15 5.83 -51.93 -0.30 0.85 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.08 1.80 8.02 -51.93 -0.42 1.39 16 35 H 0.08 1.59 7.16 -51.93 -0.37 1.22 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.08 1.48 6.82 -51.93 -0.35 1.13 16 40 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 313.78 15.07 4.73 4.73 Total: -1.00 -31.10 313.78 -8.75 -39.85 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -6.71 Total: 2.90 kcal Atomic # 6 Polarization: -11.50 SS G_CDS: -2.21 Total: -13.71 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: 0.39 Total: -35.16 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: 0.07 Total: -15.67 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.03 Total: 17.07 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.10 -8.75 -39.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361886999.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.202 kcal (2) G-P(sol) polarization free energy of solvation -31.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds