Wall clock time and date at job start Sun Mar 29 2020 23:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 115.56368 * 2 1 4 4 C 1.52996 * 117.49903 * 145.69247 * 2 1 3 5 5 C 1.52994 * 60.00123 * 107.48668 * 4 2 1 6 6 H 1.08996 * 117.50280 * 107.51613 * 5 4 2 7 7 C 1.53005 * 117.49621 * 252.51008 * 5 4 2 8 8 C 1.50705 * 109.46989 * 243.60421 * 7 5 4 9 9 O 1.21289 * 119.99907 * 0.02562 * 8 7 5 10 10 N 1.34773 * 119.99774 * 179.97438 * 8 7 5 11 11 C 1.37102 * 119.99798 * 180.02562 * 10 8 7 12 12 H 1.08000 * 120.00152 * 137.56571 * 11 10 8 13 13 C 1.38950 * 119.99936 * 317.56496 * 11 10 8 14 14 N 1.31410 * 120.00094 * 339.86124 * 13 11 10 15 15 Si 1.86802 * 119.99804 * 159.86446 * 13 11 10 16 16 H 1.48503 * 109.47113 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47052 * 119.99991 * 15 13 11 18 18 H 1.48502 * 109.46938 * 239.99843 * 15 13 11 19 19 C 1.46496 * 120.00140 * 0.02562 * 10 8 7 20 20 C 1.54269 * 110.07250 * 119.90167 * 19 10 8 21 21 C 1.54888 * 104.19693 * 95.69738 * 20 19 10 22 22 C 1.54887 * 102.74887 * 37.94179 * 21 20 19 23 23 C 1.53874 * 110.03363 * 237.08892 * 19 10 8 24 24 H 1.08997 * 109.47145 * 205.69406 * 1 2 3 25 25 H 1.09001 * 109.46755 * 325.68295 * 1 2 3 26 26 H 1.08998 * 109.47211 * 85.68656 * 1 2 3 27 27 H 1.09009 * 117.50050 * 359.97438 * 4 2 1 28 28 H 1.09000 * 117.50174 * 214.98002 * 4 2 1 29 29 H 1.09001 * 109.46750 * 123.60880 * 7 5 4 30 30 H 1.09001 * 109.47181 * 3.60832 * 7 5 4 31 31 H 0.96997 * 119.99841 * 175.12417 * 14 13 11 32 32 H 1.09003 * 110.01746 * 358.48134 * 19 10 8 33 33 H 1.09003 * 110.48540 * 214.37206 * 20 19 10 34 34 H 1.08993 * 110.48642 * 337.01458 * 20 19 10 35 35 H 1.09004 * 110.75534 * 279.62532 * 21 20 19 36 36 H 1.08999 * 110.75617 * 156.25422 * 21 20 19 37 37 H 1.09006 * 110.48830 * 203.38015 * 22 21 20 38 38 H 1.09002 * 110.49135 * 80.73852 * 22 21 20 39 39 H 1.09006 * 110.03265 * 359.95286 * 23 19 10 40 40 H 1.09001 * 110.03070 * 121.37979 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2365 -1.1210 0.7649 5 6 2.2364 -1.1210 -0.7650 6 1 3.1715 -0.8756 -1.2684 7 6 1.3587 -2.1562 -1.4714 8 6 2.2299 -3.0967 -2.2637 9 8 3.4343 -2.9533 -2.2630 10 7 1.6708 -4.0976 -2.9722 11 6 2.4634 -4.9535 -3.6925 12 1 2.2597 -6.0141 -3.6843 13 6 3.5287 -4.4564 -4.4332 14 7 3.5566 -3.1876 -4.7742 15 14 4.9213 -5.5917 -4.9443 16 1 4.6537 -6.9621 -4.4386 17 1 5.0181 -5.6204 -6.4259 18 1 6.1994 -5.0951 -4.3743 19 6 0.2161 -4.2710 -2.9725 20 6 -0.3315 -4.1468 -4.4094 21 6 -0.4292 -5.6105 -4.9065 22 6 -0.9015 -6.3701 -3.6421 23 6 -0.1463 -5.6846 -2.4847 24 1 -0.3633 -0.9260 0.4455 25 1 -0.3633 0.8488 0.5794 26 1 -0.3633 0.0773 -1.0247 27 1 1.6112 -1.8584 1.2686 28 1 3.1715 -0.8753 1.2682 29 1 0.6673 -1.6481 -2.1437 30 1 0.7948 -2.7214 -0.7294 31 1 4.3324 -2.8247 -5.2295 32 1 -0.2489 -3.5235 -2.3298 33 1 -1.3163 -3.6796 -4.4033 34 1 0.3580 -3.5775 -5.0326 35 1 0.5453 -5.9732 -5.2336 36 1 -1.1638 -5.6984 -5.7069 37 1 -0.6279 -7.4234 -3.7052 38 1 -1.9784 -6.2620 -3.5119 39 1 0.7602 -6.2420 -2.2485 40 1 -0.7872 -5.6232 -1.6052 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361886999.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:18:35 Heat of formation + Delta-G solvation = -34.875601 kcal Electronic energy + Delta-G solvation = -19602.126794 eV Core-core repulsion = 16802.592986 eV Total energy + Delta-G solvation = -2799.533807 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.72017 -38.99588 -37.90422 -34.98674 -33.48563 -30.62714 -29.36767 -29.02664 -28.44128 -26.18921 -22.69809 -21.87731 -21.20491 -21.03769 -19.78305 -18.33436 -17.55857 -16.81212 -16.55310 -15.99915 -15.80697 -15.44730 -15.01783 -14.55698 -14.34144 -14.06102 -13.65437 -13.43778 -13.19762 -12.90019 -12.89513 -12.52131 -12.35911 -12.30637 -12.20324 -12.04201 -11.98411 -11.79189 -11.72698 -11.37077 -11.16268 -10.77847 -10.67895 -10.57494 -9.89349 -9.00932 -8.11558 -5.85679 1.34912 1.41942 1.48796 2.34256 2.54222 2.88993 3.24451 3.33483 3.85675 3.90328 3.93919 4.00156 4.09646 4.18670 4.42396 4.48642 4.59614 4.66829 4.75200 4.79894 4.87995 4.91313 4.94153 4.97309 4.99581 5.05160 5.09566 5.18162 5.23656 5.25213 5.31950 5.41612 5.50751 5.51785 5.57293 5.64963 5.76576 6.31016 7.14288 7.34570 7.83161 8.48957 8.95494 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.017211 B = 0.009055 C = 0.006570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.462821 B = 3091.446062 C = 4260.827002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.139 4.139 3 H 0.106 0.894 4 C -0.169 4.169 5 C -0.156 4.156 6 H 0.070 0.930 7 C -0.082 4.082 8 C 0.459 3.541 9 O -0.591 6.591 10 N -0.462 5.462 11 C -0.330 4.330 12 H 0.077 0.923 13 C 0.021 3.979 14 N -0.869 5.869 15 Si 0.949 3.051 16 H -0.258 1.258 17 H -0.279 1.279 18 H -0.300 1.300 19 C 0.119 3.881 20 C -0.120 4.120 21 C -0.117 4.117 22 C -0.108 4.108 23 C -0.128 4.128 24 H 0.063 0.937 25 H 0.077 0.923 26 H 0.058 0.942 27 H 0.104 0.896 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.252 0.748 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.032 0.968 35 H 0.043 0.957 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.087 0.913 39 H 0.046 0.954 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.425 0.688 6.829 14.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.157 4.157 3 H 0.124 0.876 4 C -0.206 4.206 5 C -0.175 4.175 6 H 0.089 0.911 7 C -0.122 4.122 8 C 0.248 3.752 9 O -0.473 6.473 10 N -0.183 5.183 11 C -0.458 4.458 12 H 0.095 0.905 13 C -0.184 4.184 14 N -0.506 5.506 15 Si 0.776 3.224 16 H -0.182 1.182 17 H -0.205 1.205 18 H -0.227 1.227 19 C 0.015 3.985 20 C -0.159 4.159 21 C -0.155 4.155 22 C -0.146 4.146 23 C -0.166 4.166 24 H 0.082 0.918 25 H 0.095 0.905 26 H 0.077 0.923 27 H 0.123 0.877 28 H 0.108 0.892 29 H 0.102 0.898 30 H 0.115 0.885 31 H 0.061 0.939 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.051 0.949 35 H 0.062 0.938 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.106 0.894 39 H 0.065 0.935 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.772 0.854 6.677 13.561 hybrid contribution 1.616 -0.274 -0.697 1.781 sum -10.157 0.581 5.980 11.801 Atomic orbital electron populations 1.21368 0.91098 1.02914 1.02193 1.22521 0.96651 0.93772 1.02764 0.87599 1.23192 1.02578 1.01919 0.92938 1.21955 1.00464 1.00470 0.94610 0.91144 1.20972 0.97183 0.95324 0.98713 1.20888 0.88656 0.84344 0.81336 1.90454 1.17815 1.73264 1.65789 1.43659 1.04573 1.28325 1.41785 1.19020 1.11952 0.89669 1.25135 0.90535 1.25832 1.01454 0.96571 0.94569 1.70007 1.28192 1.15451 1.36932 0.85570 0.79656 0.79809 0.77375 1.18196 1.20494 1.22675 1.22014 0.81825 0.97734 0.96887 1.22525 0.99634 0.97639 0.96056 1.22402 1.00236 0.94925 0.97905 1.22253 1.00152 0.98627 0.93537 1.22465 0.99824 0.95273 0.99040 0.91799 0.90451 0.92287 0.87733 0.89170 0.89771 0.88474 0.93910 0.89253 0.89697 0.94879 0.93783 0.90841 0.91952 0.89441 0.93513 0.89765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.48 9.19 71.98 0.66 -1.82 16 2 C -0.14 -3.73 6.41 -10.79 -0.07 -3.80 16 3 H 0.11 2.65 8.14 -2.39 -0.02 2.64 16 4 C -0.17 -4.93 9.82 30.59 0.30 -4.63 16 5 C -0.16 -5.77 5.42 -10.79 -0.06 -5.83 16 6 H 0.07 3.24 7.30 -2.39 -0.02 3.22 16 7 C -0.08 -3.12 3.38 29.85 0.10 -3.02 16 8 C 0.46 23.68 6.98 87.66 0.61 24.29 16 9 O -0.59 -36.61 13.22 -3.06 -0.04 -36.65 16 10 N -0.46 -22.79 2.40 -609.38 -1.46 -24.25 16 11 C -0.33 -18.14 6.98 84.04 0.59 -17.55 16 12 H 0.08 4.11 6.88 -2.91 -0.02 4.09 16 13 C 0.02 1.21 4.32 84.93 0.37 1.58 16 14 N -0.87 -54.12 11.71 21.66 0.25 -53.86 16 15 Si 0.95 47.10 29.60 68.60 2.03 49.13 16 16 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 17 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 18 H -0.30 -15.56 7.11 99.48 0.71 -14.86 16 19 C 0.12 4.45 3.26 45.72 0.15 4.60 16 20 C -0.12 -4.34 6.12 31.67 0.19 -4.14 16 21 C -0.12 -3.84 6.56 31.88 0.21 -3.63 16 22 C -0.11 -2.95 6.83 31.67 0.22 -2.73 16 23 C -0.13 -4.05 6.19 31.32 0.19 -3.86 16 24 H 0.06 1.24 7.90 -2.39 -0.02 1.22 16 25 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.06 1.27 7.83 -2.39 -0.02 1.25 16 27 H 0.10 2.70 7.94 -2.38 -0.02 2.68 16 28 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 29 H 0.08 3.02 7.45 -2.39 -0.02 3.00 16 30 H 0.10 3.12 7.50 -2.39 -0.02 3.10 16 31 H 0.25 15.39 8.32 -92.71 -0.77 14.62 16 32 H 0.09 2.87 5.83 -2.39 -0.01 2.85 16 33 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.03 1.50 8.02 -2.39 -0.02 1.48 16 35 H 0.04 1.75 7.16 -2.38 -0.02 1.73 16 36 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 38 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.05 1.76 6.82 -2.38 -0.02 1.74 16 40 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -72.74 313.78 5.24 -67.50 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: 1.00 Total: 18.69 kcal Atomic # 6 Polarization: -24.01 SS G_CDS: 3.46 Total: -20.55 kcal Atomic # 7 Polarization: -76.91 SS G_CDS: -1.21 Total: -78.12 kcal Atomic # 8 Polarization: -36.61 SS G_CDS: -0.04 Total: -36.65 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.13 kcal Total: -72.74 5.24 -67.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361886999.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.625 kcal (2) G-P(sol) polarization free energy of solvation -72.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds