Wall clock time and date at job start Sun Mar 29 2020 23:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47102 * 2 1 4 4 C 1.50701 * 109.47575 * 120.00066 * 2 1 3 5 5 O 1.21275 * 119.99911 * 94.72435 * 4 2 1 6 6 N 1.34773 * 119.99971 * 274.72446 * 4 2 1 7 7 C 1.46929 * 120.62812 * 4.94336 * 6 4 2 8 8 C 1.53619 * 108.54695 * 126.36783 * 7 6 4 9 9 C 1.53040 * 109.24239 * 54.85038 * 8 7 6 10 10 C 1.53045 * 109.54170 * 298.51288 * 9 8 7 11 11 H 1.09004 * 109.49452 * 301.41500 * 10 9 8 12 12 C 1.50697 * 109.50268 * 181.31625 * 10 9 8 13 13 H 1.07996 * 120.00263 * 240.16348 * 12 10 9 14 14 C 1.37879 * 119.99900 * 60.16272 * 12 10 9 15 15 N 1.31520 * 120.00003 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 120.00148 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.46878 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47126 * 119.99945 * 16 14 12 19 19 H 1.48493 * 109.47256 * 240.00012 * 16 14 12 20 20 C 1.46930 * 120.63297 * 185.21373 * 6 4 2 21 21 C 1.53001 * 109.47055 * 239.99923 * 2 1 3 22 22 C 1.53006 * 117.49932 * 128.61509 * 21 2 1 23 23 C 1.53000 * 60.00194 * 252.51538 * 22 21 2 24 24 H 1.08993 * 109.47872 * 54.96194 * 1 2 3 25 25 H 1.09003 * 109.46999 * 174.96544 * 1 2 3 26 26 H 1.09007 * 109.46719 * 294.96105 * 1 2 3 27 27 H 1.09003 * 109.58004 * 246.19644 * 7 6 4 28 28 H 1.08992 * 109.58943 * 6.61609 * 7 6 4 29 29 H 1.09000 * 109.63464 * 294.86471 * 8 7 6 30 30 H 1.09000 * 109.46466 * 174.73665 * 8 7 6 31 31 H 1.09007 * 109.46461 * 178.49678 * 9 8 7 32 32 H 1.08997 * 109.46619 * 58.53552 * 9 8 7 33 33 H 0.96999 * 119.99740 * 180.02562 * 15 14 12 34 34 H 1.08995 * 109.58147 * 353.37984 * 20 6 4 35 35 H 1.08998 * 109.58143 * 113.65777 * 20 6 4 36 36 H 1.08999 * 115.55167 * 274.33176 * 21 2 1 37 37 H 1.08996 * 117.49597 * 0.02562 * 22 21 2 38 38 H 1.08999 * 117.49584 * 145.02194 * 22 21 2 39 39 H 1.08996 * 117.49640 * 252.51017 * 23 22 21 40 40 H 1.08997 * 117.49718 * 107.48980 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.3161 -1.8883 1.1772 6 7 2.1665 -0.0367 2.3900 7 6 1.7259 1.3607 2.4990 8 6 0.7679 1.4792 3.6940 9 6 1.4571 0.9380 4.9487 10 6 1.7966 -0.5408 4.7487 11 1 0.8834 -1.0990 4.5424 12 6 2.4461 -1.0811 5.9967 13 1 3.4463 -1.4860 5.9529 14 6 1.7633 -1.0584 7.1943 15 7 0.5451 -0.5656 7.2475 16 14 2.5686 -1.7274 8.7414 17 1 3.9313 -2.2202 8.4166 18 1 2.6622 -0.6481 9.7571 19 1 1.7529 -2.8450 9.2804 20 6 2.7613 -0.6839 3.5674 21 6 2.0400 -0.7213 -1.2492 22 6 3.0740 0.0052 -2.1118 23 6 1.6356 -0.1495 -2.6096 24 1 -0.3634 0.5899 -0.8413 25 1 -0.3633 -1.0237 -0.0902 26 1 -0.3633 0.4337 0.9318 27 1 2.5910 2.0053 2.6554 28 1 1.2100 1.6536 1.5847 29 1 -0.1356 0.9019 3.4977 30 1 0.5048 2.5260 3.8463 31 1 0.7902 1.0450 5.8042 32 1 2.3735 1.4996 5.1305 33 1 0.0649 -0.5493 8.0902 34 1 2.9285 -1.7404 3.3580 35 1 3.7102 -0.2043 3.8075 36 1 2.1266 -1.8045 -1.1642 37 1 3.3912 0.9968 -1.7890 38 1 3.8414 -0.6001 -2.5943 39 1 1.4567 -0.8565 -3.4196 40 1 1.0063 0.7405 -2.6145 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397667503.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:25:13 Heat of formation + Delta-G solvation = -29.258635 kcal Electronic energy + Delta-G solvation = -19185.768735 eV Core-core repulsion = 16386.478498 eV Total energy + Delta-G solvation = -2799.290237 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.95249 -37.59765 -36.43045 -33.59722 -32.11021 -31.20571 -29.94941 -25.51659 -25.05216 -24.00334 -22.33674 -21.73396 -20.94287 -19.40109 -18.13855 -17.09310 -16.22364 -15.84844 -14.83761 -14.61238 -14.39502 -14.25435 -13.60837 -13.33156 -13.07575 -12.76634 -12.60534 -12.23219 -12.02093 -11.90624 -11.79298 -11.48926 -11.00858 -10.95299 -10.80539 -10.67893 -10.38307 -10.28681 -10.03283 -9.93525 -9.77896 -9.44325 -9.15748 -8.79441 -8.38536 -7.86110 -6.01797 -4.08674 3.08867 3.28912 3.37034 3.40937 3.52055 3.81626 4.42829 4.59556 4.71856 4.88327 5.05639 5.22150 5.28191 5.35727 5.44223 5.50007 5.54025 5.63749 5.71420 5.78176 5.81935 5.91068 6.03879 6.11919 6.20346 6.33506 6.35893 6.41765 6.49375 6.67808 6.82644 7.00291 7.17892 7.34289 7.69656 7.92979 8.05388 8.08147 8.38366 8.70237 8.95408 9.56267 11.03818 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.041168 B = 0.005116 C = 0.004844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.974148 B = 5472.101988 C = 5779.391496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.080 4.080 3 H 0.088 0.912 4 C 0.516 3.484 5 O -0.550 6.550 6 N -0.604 5.604 7 C 0.107 3.893 8 C -0.134 4.134 9 C -0.112 4.112 10 C 0.040 3.960 11 H 0.029 0.971 12 C -0.513 4.513 13 H 0.057 0.943 14 C 0.063 3.937 15 N -0.889 5.889 16 Si 0.892 3.108 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.117 3.883 21 C -0.134 4.134 22 C -0.181 4.181 23 C -0.178 4.178 24 H 0.064 0.936 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.095 0.905 32 H 0.035 0.965 33 H 0.260 0.740 34 H 0.078 0.922 35 H 0.054 0.946 36 H 0.118 0.882 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.236 6.153 -14.656 15.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.101 4.101 3 H 0.106 0.894 4 C 0.304 3.696 5 O -0.428 6.428 6 N -0.335 5.335 7 C -0.016 4.016 8 C -0.172 4.172 9 C -0.150 4.150 10 C 0.021 3.979 11 H 0.047 0.953 12 C -0.552 4.552 13 H 0.076 0.924 14 C -0.138 4.138 15 N -0.528 5.528 16 Si 0.720 3.280 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.210 1.210 20 C -0.004 4.004 21 C -0.153 4.153 22 C -0.218 4.218 23 C -0.215 4.215 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.113 0.887 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.096 0.904 35 H 0.072 0.928 36 H 0.136 0.864 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.254 5.560 -14.537 15.566 hybrid contribution 0.369 -0.176 0.966 1.049 sum 0.623 5.384 -13.571 14.613 Atomic orbital electron populations 1.21721 0.92530 1.03079 1.02347 1.20848 0.97549 0.99499 0.92248 0.89399 1.20372 0.77886 0.87107 0.84258 1.90630 1.51426 1.15817 1.84968 1.48290 1.60524 1.13116 1.11615 1.21876 0.98167 0.82299 0.99304 1.22072 0.98391 1.00168 0.96577 1.21628 0.99518 0.97530 0.96352 1.18967 0.94577 0.93167 0.91191 0.95272 1.21127 1.01334 1.39941 0.92771 0.92448 1.24938 0.94801 0.95161 0.98921 1.69887 1.11115 1.45783 1.26027 0.86528 0.79615 0.78682 0.83142 1.19728 1.21051 1.21022 1.21981 0.96470 0.97677 0.84304 1.22150 1.03010 1.00340 0.89787 1.23015 0.92540 1.01914 1.04374 1.22934 0.98012 1.03198 0.97358 0.91751 0.91754 0.91751 0.92057 0.90951 0.92354 0.92520 0.88670 0.94607 0.93055 0.90376 0.92809 0.86413 0.88953 0.88897 0.88864 0.88848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 8.64 37.16 0.32 -1.36 16 2 C -0.08 -1.08 2.01 -91.77 -0.18 -1.26 16 3 H 0.09 1.03 6.49 -51.93 -0.34 0.70 16 4 C 0.52 9.48 6.80 -10.99 -0.07 9.40 16 5 O -0.55 -12.13 15.22 5.56 0.08 -12.04 16 6 N -0.60 -11.31 2.97 -172.51 -0.51 -11.82 16 7 C 0.11 1.65 5.95 -3.49 -0.02 1.63 16 8 C -0.13 -2.36 6.10 -26.39 -0.16 -2.53 16 9 C -0.11 -2.52 4.96 -26.69 -0.13 -2.65 16 10 C 0.04 0.99 2.25 -91.65 -0.21 0.79 16 11 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 12 C -0.51 -13.99 8.56 -34.44 -0.29 -14.29 16 13 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 14 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 15 N -0.89 -25.03 11.32 55.43 0.63 -24.40 16 16 Si 0.89 21.18 29.54 -169.99 -5.02 16.15 16 17 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 C 0.12 2.57 5.66 -3.71 -0.02 2.55 16 21 C -0.13 -1.71 4.97 -90.61 -0.45 -2.16 16 22 C -0.18 -1.92 10.18 -26.73 -0.27 -2.19 16 23 C -0.18 -1.73 9.79 -26.73 -0.26 -1.99 16 24 H 0.06 0.61 7.47 -51.93 -0.39 0.22 16 25 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.06 0.80 7.20 -51.92 -0.37 0.43 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.07 0.90 4.89 -51.93 -0.25 0.65 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.10 2.42 6.05 -51.93 -0.31 2.11 16 32 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 34 H 0.08 1.86 7.00 -51.93 -0.36 1.49 16 35 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 36 H 0.12 1.75 7.33 -51.93 -0.38 1.37 16 37 H 0.09 0.91 8.05 -51.93 -0.42 0.49 16 38 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.09 0.80 7.66 -51.93 -0.40 0.40 16 LS Contribution 312.99 15.07 4.72 4.72 Total: -1.00 -29.92 312.99 -8.53 -38.44 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -6.57 Total: 1.36 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: -1.85 Total: -12.42 kcal Atomic # 7 Polarization: -36.33 SS G_CDS: 0.12 Total: -36.22 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.08 Total: -12.04 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.92 -8.53 -38.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397667503.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.186 kcal (2) G-P(sol) polarization free energy of solvation -29.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds