Wall clock time and date at job start Sun Mar 29 2020 23:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46898 * 109.47122 * 2 1 4 4 C 1.46895 * 110.99880 * 289.52177 * 3 2 1 5 5 C 1.53001 * 109.46992 * 160.28754 * 4 3 2 6 6 C 1.53000 * 109.47388 * 184.91800 * 5 4 3 7 7 C 1.50694 * 109.47386 * 179.97438 * 6 5 4 8 8 H 1.08003 * 120.00250 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00131 * 179.97438 * 7 6 5 10 10 N 1.31522 * 119.99945 * 180.02562 * 9 7 6 11 11 Si 1.86797 * 120.00142 * 0.02562 * 9 7 6 12 12 H 1.48507 * 109.46798 * 89.99750 * 11 9 7 13 13 H 1.48495 * 109.47203 * 209.99804 * 11 9 7 14 14 H 1.48502 * 109.47110 * 330.00119 * 11 9 7 15 15 C 1.46905 * 110.99958 * 165.56639 * 3 2 1 16 16 C 1.50704 * 109.47121 * 293.95671 * 15 3 2 17 17 O 1.34298 * 125.78702 * 270.16379 * 16 15 3 18 18 C 1.34299 * 109.47458 * 180.23934 * 17 16 15 19 19 C 1.34511 * 108.42413 * 359.77056 * 18 17 16 20 20 C 1.34512 * 125.78995 * 90.00140 * 16 15 3 21 21 C 1.50699 * 126.57715 * 0.03180 * 20 16 15 22 22 H 1.08997 * 109.47262 * 299.37769 * 1 2 3 23 23 H 1.09000 * 109.47272 * 59.38011 * 1 2 3 24 24 H 1.09004 * 109.47139 * 179.38100 * 1 2 3 25 25 H 1.09001 * 109.47059 * 240.00177 * 2 1 3 26 26 H 1.09002 * 109.47395 * 120.00578 * 2 1 3 27 27 H 1.08996 * 109.47493 * 280.28364 * 4 3 2 28 28 H 1.08994 * 109.47430 * 40.28813 * 4 3 2 29 29 H 1.08998 * 109.47314 * 304.92205 * 5 4 3 30 30 H 1.09001 * 109.47041 * 64.91886 * 5 4 3 31 31 H 1.09003 * 109.47185 * 299.99979 * 6 5 4 32 32 H 1.09001 * 109.46959 * 60.00036 * 6 5 4 33 33 H 0.96998 * 119.99780 * 180.02562 * 10 9 7 34 34 H 1.09000 * 109.47065 * 173.95445 * 15 3 2 35 35 H 1.09003 * 109.46505 * 53.95724 * 15 3 2 36 36 H 1.08006 * 125.79200 * 179.74733 * 18 17 16 37 37 H 1.07997 * 126.58615 * 179.97438 * 19 18 17 38 38 H 1.09004 * 109.47226 * 269.70717 * 21 20 16 39 39 H 1.09007 * 109.47072 * 149.71213 * 21 20 16 40 40 H 1.08996 * 109.47661 * 29.71269 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7631 2.0340 -1.2926 5 6 1.8175 3.5533 -1.1200 6 6 1.4302 4.2303 -2.4363 7 6 1.4832 5.7267 -2.2662 8 1 1.7654 6.1524 -1.3146 9 6 1.1725 6.5524 -3.3257 10 7 1.2193 7.8584 -3.1774 11 14 0.6851 5.8163 -4.9719 12 1 -0.7870 5.6243 -5.0118 13 1 1.0945 6.7341 -6.0652 14 1 1.3602 4.5053 -5.1473 15 6 3.4474 1.4386 0.3419 16 6 3.6397 0.9902 1.7677 17 8 3.6169 1.7844 2.8505 18 6 3.8292 1.0459 3.9520 19 6 3.9856 -0.2373 3.5798 20 6 3.8602 -0.2736 2.1720 21 6 3.9607 -1.4932 1.2926 22 1 -0.3634 0.5041 0.8955 23 1 -0.3634 0.5234 -0.8844 24 1 -0.3633 -1.0276 -0.0111 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 2.5203 1.7228 -2.0121 28 1 0.7767 1.7447 -1.6550 29 1 1.1215 3.8553 -0.3375 30 1 2.8284 3.8514 -0.8419 31 1 2.1263 3.9283 -3.2188 32 1 0.4193 3.9323 -2.7144 33 1 1.0004 8.4393 -3.9227 34 1 3.8095 2.4606 0.2303 35 1 4.0054 0.7806 -0.3244 36 1 3.8681 1.4189 4.9648 37 1 4.1717 -1.0783 4.2313 38 1 2.9727 -1.9383 1.1743 39 1 4.6331 -2.2179 1.7518 40 1 4.3490 -1.2057 0.3155 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000412027862.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:35:01 Heat of formation + Delta-G solvation = -15.829782 kcal Electronic energy + Delta-G solvation = -18531.665756 eV Core-core repulsion = 15732.957837 eV Total energy + Delta-G solvation = -2798.707918 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.51385 -39.22173 -35.89119 -34.98087 -33.69284 -32.53844 -31.03148 -29.23041 -27.91969 -25.81139 -24.46986 -22.52569 -22.03057 -21.56678 -20.42655 -18.89436 -18.03909 -17.34944 -16.60671 -16.32293 -15.88231 -15.84703 -15.32351 -15.00240 -14.69308 -14.63829 -14.04030 -13.83096 -13.60834 -13.47977 -13.27471 -13.15478 -12.81966 -12.67841 -12.47527 -12.41370 -12.17722 -11.94237 -11.72412 -11.37968 -11.32409 -11.23172 -10.75116 -10.49201 -9.41447 -9.17042 -8.28285 -6.32880 0.80245 1.36902 1.39275 1.51476 1.67561 2.18280 2.37733 3.01168 3.06958 3.79207 3.98942 4.02226 4.08074 4.15449 4.25562 4.30485 4.42992 4.60027 4.63469 4.66830 4.71621 4.78845 4.84380 4.87509 4.89730 4.97596 5.05944 5.10852 5.15300 5.18350 5.34470 5.37870 5.53774 5.60779 5.67746 5.71915 6.07333 6.14902 6.31443 6.33241 6.75546 7.31586 8.89095 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.030351 B = 0.004492 C = 0.004141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.317747 B = 6231.421095 C = 6760.147173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.040 3.960 3 N -0.549 5.549 4 C 0.064 3.936 5 C -0.087 4.087 6 C -0.008 4.008 7 C -0.534 4.534 8 H 0.025 0.975 9 C 0.000 4.000 10 N -0.955 5.955 11 Si 0.956 3.044 12 H -0.266 1.266 13 H -0.284 1.284 14 H -0.243 1.243 15 C 0.130 3.870 16 C -0.024 4.024 17 O -0.197 6.197 18 C -0.047 4.047 19 C -0.221 4.221 20 C -0.180 4.180 21 C -0.084 4.084 22 H 0.046 0.954 23 H 0.050 0.950 24 H 0.078 0.922 25 H 0.046 0.954 26 H 0.088 0.912 27 H 0.045 0.955 28 H 0.083 0.917 29 H 0.042 0.958 30 H 0.041 0.959 31 H 0.023 0.977 32 H 0.021 0.979 33 H 0.266 0.734 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.231 0.769 37 H 0.170 0.830 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.391 -23.480 9.373 25.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.087 4.087 3 N -0.274 5.274 4 C -0.063 4.063 5 C -0.125 4.125 6 C -0.046 4.046 7 C -0.572 4.572 8 H 0.043 0.957 9 C -0.196 4.196 10 N -0.596 5.596 11 Si 0.779 3.221 12 H -0.191 1.191 13 H -0.210 1.210 14 H -0.166 1.166 15 C 0.003 3.997 16 C -0.074 4.074 17 O -0.093 6.093 18 C -0.114 4.114 19 C -0.240 4.240 20 C -0.182 4.182 21 C -0.141 4.141 22 H 0.065 0.935 23 H 0.069 0.931 24 H 0.097 0.903 25 H 0.064 0.936 26 H 0.106 0.894 27 H 0.063 0.937 28 H 0.101 0.899 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.041 0.959 32 H 0.039 0.961 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.247 0.753 37 H 0.188 0.812 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.062 -22.769 9.624 25.051 hybrid contribution 0.261 0.259 -0.865 0.939 sum 4.323 -22.511 8.760 24.539 Atomic orbital electron populations 1.21794 0.94667 1.02207 1.01732 1.22425 0.96554 0.87903 1.01832 1.61944 1.15389 1.18306 1.31774 1.22138 1.01679 0.93695 0.88792 1.21271 0.99943 0.93819 0.97493 1.19486 0.96493 0.93381 0.95273 1.21518 1.45815 0.92199 0.97680 0.95701 1.26103 0.94853 0.94990 1.03623 1.70093 1.51152 1.04681 1.33660 0.85571 0.79408 0.79374 0.77753 1.19055 1.20990 1.16578 1.20450 0.89737 1.02195 0.87301 1.22216 1.07128 0.89528 0.88525 1.84051 1.70220 1.39557 1.15483 1.24743 1.04482 0.90918 0.91229 1.22022 1.08857 0.98266 0.94867 1.20567 1.07271 0.95027 0.95346 1.20379 1.02799 0.93279 0.97608 0.93462 0.93059 0.90298 0.93597 0.89429 0.93690 0.89850 0.93942 0.94053 0.95896 0.96094 0.92514 0.90572 0.90076 0.75275 0.81211 0.90397 0.90155 0.91597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.19 9.97 71.98 0.72 -2.48 16 2 C 0.04 0.90 5.13 86.30 0.44 1.34 16 3 N -0.55 -15.80 4.39 -900.80 -3.96 -19.76 16 4 C 0.06 2.01 4.83 86.30 0.42 2.43 16 5 C -0.09 -3.59 5.19 30.59 0.16 -3.44 16 6 C -0.01 -0.40 4.04 29.85 0.12 -0.28 16 7 C -0.53 -32.07 9.66 25.60 0.25 -31.83 16 8 H 0.02 1.66 7.99 -2.91 -0.02 1.64 16 9 C 0.00 0.03 5.47 84.65 0.46 0.49 16 10 N -0.95 -61.65 13.96 21.45 0.30 -61.35 16 11 Si 0.96 44.83 27.47 68.60 1.88 46.72 16 12 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 13 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 14 H -0.24 -10.38 6.54 99.48 0.65 -9.73 16 15 C 0.13 3.57 5.12 85.56 0.44 4.01 16 16 C -0.02 -0.65 6.27 24.83 0.16 -0.49 16 17 O -0.20 -5.78 10.65 -2.40 -0.03 -5.80 16 18 C -0.05 -0.98 12.09 66.97 0.81 -0.17 16 19 C -0.22 -4.33 10.87 22.19 0.24 -4.09 16 20 C -0.18 -3.95 5.22 -19.94 -0.10 -4.05 16 21 C -0.08 -1.32 9.06 71.24 0.65 -0.67 16 22 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 23 H 0.05 1.19 6.44 -2.39 -0.02 1.17 16 24 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 25 H 0.05 0.91 8.07 -2.39 -0.02 0.89 16 26 H 0.09 1.88 3.75 -2.39 -0.01 1.88 16 27 H 0.04 1.30 8.00 -2.39 -0.02 1.28 16 28 H 0.08 2.50 6.14 -2.39 -0.01 2.49 16 29 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.04 1.75 6.95 -2.39 -0.02 1.73 16 31 H 0.02 1.05 7.20 -2.39 -0.02 1.03 16 32 H 0.02 0.96 7.57 -2.39 -0.02 0.94 16 33 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 34 H 0.08 2.37 6.71 -2.39 -0.02 2.35 16 35 H 0.08 1.85 7.12 -2.39 -0.02 1.84 16 36 H 0.23 2.91 8.06 -2.91 -0.02 2.88 16 37 H 0.17 2.31 8.06 -2.91 -0.02 2.28 16 38 H 0.08 1.09 6.77 -2.39 -0.02 1.07 16 39 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 40 H 0.07 1.00 7.14 -2.39 -0.02 0.98 16 Total: -1.00 -71.69 316.98 3.90 -67.79 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: 0.95 Total: 11.63 kcal Atomic # 6 Polarization: -43.98 SS G_CDS: 4.75 Total: -39.23 kcal Atomic # 7 Polarization: -77.45 SS G_CDS: -3.66 Total: -81.11 kcal Atomic # 8 Polarization: -5.78 SS G_CDS: -0.03 Total: -5.80 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.88 Total: 46.72 kcal Total: -71.69 3.90 -67.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412027862.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.956 kcal (2) G-P(sol) polarization free energy of solvation -71.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds