Wall clock time and date at job start Sun Mar 29 2020 23:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47368 * 2 1 4 4 C 1.50700 * 109.47106 * 240.00482 * 2 1 3 5 5 H 1.07999 * 120.00552 * 239.99578 * 4 2 1 6 6 C 1.37879 * 119.99967 * 60.00074 * 4 2 1 7 7 N 1.31518 * 119.99752 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00084 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.46773 * 90.00022 * 8 6 4 10 10 H 1.48503 * 109.47070 * 209.99659 * 8 6 4 11 11 H 1.48490 * 109.47290 * 330.00043 * 8 6 4 12 12 N 1.46502 * 109.47349 * 120.00625 * 2 1 3 13 13 C 1.46499 * 120.00062 * 60.00143 * 12 2 1 14 14 C 1.34779 * 119.99726 * 239.99897 * 12 2 1 15 15 O 1.21279 * 120.00410 * 359.97438 * 14 12 2 16 16 C 1.50703 * 119.99541 * 179.97438 * 14 12 2 17 17 C 1.53000 * 109.46653 * 179.97438 * 16 14 12 18 18 H 1.09003 * 110.43295 * 52.46505 * 17 16 14 19 19 C 1.54883 * 110.49299 * 289.77499 * 17 16 14 20 20 C 1.55463 * 102.48998 * 202.95020 * 19 17 16 21 21 C 1.54274 * 103.91823 * 38.66892 * 20 19 17 22 22 H 1.09000 * 117.40705 * 195.61508 * 21 20 19 23 23 C 1.52997 * 118.68634 * 39.81181 * 21 20 19 24 24 C 1.52999 * 60.37663 * 266.64910 * 23 21 20 25 25 H 1.08998 * 119.75268 * 248.87404 * 24 23 21 26 26 H 1.08998 * 109.47159 * 59.99687 * 1 2 3 27 27 H 1.09003 * 109.46919 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47154 * 299.98961 * 1 2 3 29 29 H 0.97008 * 119.99487 * 180.02562 * 7 6 4 30 30 H 1.09002 * 109.47391 * 89.99876 * 13 12 2 31 31 H 1.09001 * 109.46813 * 329.99933 * 13 12 2 32 32 H 1.09004 * 109.47041 * 210.00060 * 13 12 2 33 33 H 1.08996 * 109.47057 * 299.99739 * 16 14 12 34 34 H 1.08996 * 109.47084 * 60.00703 * 16 14 12 35 35 H 1.09004 * 110.75592 * 321.69597 * 19 17 16 36 36 H 1.09005 * 110.75590 * 85.06152 * 19 17 16 37 37 H 1.08997 * 111.29550 * 279.75188 * 20 19 17 38 38 H 1.09006 * 110.05464 * 156.98457 * 20 19 17 39 39 H 1.09003 * 117.46000 * 159.05346 * 23 21 20 40 40 H 1.09004 * 117.45995 * 14.25223 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1316 6 6 1.6992 -0.2391 -2.4828 7 7 0.9427 0.8299 -2.6033 8 14 2.3224 -1.1191 -4.0081 9 1 1.3446 -2.1611 -4.4126 10 1 2.4871 -0.1397 -5.1121 11 1 3.6307 -1.7562 -3.7122 12 7 2.0183 -0.6907 1.1961 13 6 1.6645 -2.0933 1.4278 14 6 2.7932 -0.0358 2.0833 15 8 3.0866 1.1252 1.8912 16 6 3.2951 -0.7462 3.3139 17 6 4.1458 0.2152 4.1464 18 1 3.5987 1.1381 4.3391 19 6 5.4848 0.5153 3.4281 20 6 6.4042 0.9568 4.6015 21 6 6.0079 0.0155 5.7578 22 1 6.3254 0.2939 6.7626 23 6 5.7215 -1.4541 5.4432 24 6 4.5687 -0.4486 5.4732 25 1 3.8235 -0.5036 6.2668 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 0.7080 1.1612 -3.4843 30 1 2.4158 -2.7378 0.9713 31 1 0.6905 -2.3003 0.9844 32 1 1.6239 -2.2855 2.5000 33 1 2.4472 -1.0883 3.9071 34 1 3.9006 -1.6027 3.0175 35 1 5.8701 -0.3796 2.9395 36 1 5.3648 1.3272 2.7106 37 1 6.2236 1.9959 4.8765 38 1 7.4502 0.8107 4.3320 39 1 5.7887 -2.1665 6.2655 40 1 6.0354 -1.8301 4.4694 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000448907994.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:33:08 Heat of formation + Delta-G solvation = -20.683794 kcal Electronic energy + Delta-G solvation = -19016.135427 eV Core-core repulsion = 16217.217023 eV Total energy + Delta-G solvation = -2798.918404 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.00122 -38.56574 -35.28419 -32.90487 -32.03852 -30.30290 -29.14655 -26.10630 -25.32951 -25.03879 -23.44533 -21.04514 -19.67905 -18.94317 -18.03559 -16.74453 -16.39180 -15.79777 -15.28014 -14.82684 -14.50135 -13.93544 -13.49847 -13.16358 -12.79612 -12.53970 -12.43366 -12.24964 -11.59316 -11.52027 -11.45619 -11.27439 -11.02410 -10.82144 -10.78465 -10.71217 -10.62110 -10.45451 -10.21548 -10.13961 -10.00730 -9.54942 -9.12638 -8.77699 -8.39563 -7.51294 -6.04571 -4.12322 3.27487 3.34484 3.37258 3.50619 3.67388 4.06053 4.41588 4.49600 4.71171 4.95304 5.13719 5.20645 5.25866 5.32433 5.44492 5.47438 5.62575 5.73819 5.75675 5.78498 5.85413 6.03053 6.06756 6.10870 6.15913 6.22377 6.30657 6.33986 6.54399 6.61584 6.79522 6.85791 7.09870 7.49697 7.57319 7.75520 8.05569 8.23991 8.61217 8.87632 9.15341 9.54412 11.00632 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.032593 B = 0.005082 C = 0.004921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.884965 B = 5508.241192 C = 5688.170838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.257 3.743 3 H 0.063 0.937 4 C -0.523 4.523 5 H 0.058 0.942 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.275 1.275 12 N -0.596 5.596 13 C 0.088 3.912 14 C 0.502 3.498 15 O -0.553 6.553 16 C -0.130 4.130 17 C -0.044 4.044 18 H 0.087 0.913 19 C -0.122 4.122 20 C -0.096 4.096 21 C -0.169 4.169 22 H 0.104 0.896 23 C -0.154 4.154 24 C -0.162 4.162 25 H 0.107 0.893 26 H 0.093 0.907 27 H 0.029 0.971 28 H 0.011 0.989 29 H 0.263 0.737 30 H 0.047 0.953 31 H 0.071 0.929 32 H 0.052 0.948 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.064 0.936 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.095 0.905 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.692 -5.211 14.316 16.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.156 3.844 3 H 0.081 0.919 4 C -0.562 4.562 5 H 0.076 0.924 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.200 1.200 12 N -0.328 5.328 13 C -0.056 4.056 14 C 0.289 3.711 15 O -0.432 6.432 16 C -0.170 4.170 17 C -0.063 4.063 18 H 0.105 0.895 19 C -0.159 4.159 20 C -0.133 4.133 21 C -0.187 4.187 22 H 0.122 0.878 23 C -0.191 4.191 24 C -0.181 4.181 25 H 0.125 0.875 26 H 0.111 0.889 27 H 0.048 0.952 28 H 0.030 0.970 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.090 0.910 32 H 0.071 0.929 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.082 0.918 36 H 0.102 0.898 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.113 0.887 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.739 -4.469 14.039 15.811 hybrid contribution 0.178 -0.705 -0.841 1.112 sum 5.917 -5.174 13.198 15.361 Atomic orbital electron populations 1.22092 0.98398 0.99271 1.00773 1.18910 0.90756 0.94543 0.80143 0.91930 1.21330 1.31650 1.12863 0.90361 0.92390 1.24899 0.95020 0.94980 0.98945 1.69888 1.36492 1.22643 1.23668 0.86504 0.79172 0.79294 0.82471 1.20642 1.21113 1.19984 1.48248 1.49217 1.11590 1.23714 1.21535 1.01431 0.83369 0.99311 1.20474 0.78969 0.87188 0.84479 1.90618 1.58322 1.17237 1.77070 1.21679 1.00430 0.99457 0.95459 1.21309 0.95964 0.97559 0.91463 0.89475 1.22669 0.94036 1.02011 0.97195 1.22032 0.99317 0.98163 0.93778 1.23126 1.00197 0.95695 0.99724 0.87807 1.22862 1.01755 0.91609 1.02858 1.23194 0.91503 1.03782 0.99581 0.87543 0.88870 0.95180 0.97039 0.92747 0.93477 0.91043 0.92942 0.89733 0.89699 0.91775 0.89831 0.90958 0.91949 0.88706 0.88920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 8.95 37.16 0.33 -3.23 16 2 C 0.26 6.65 2.64 -69.08 -0.18 6.47 16 3 H 0.06 1.88 6.90 -51.93 -0.36 1.52 16 4 C -0.52 -14.33 8.37 -34.44 -0.29 -14.62 16 5 H 0.06 1.57 7.65 -52.49 -0.40 1.17 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -25.40 11.32 55.43 0.63 -24.77 16 8 Si 0.90 21.24 29.54 -169.99 -5.02 16.21 16 9 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 12 N -0.60 -12.86 2.75 -175.26 -0.48 -13.34 16 13 C 0.09 1.49 9.48 59.85 0.57 2.05 16 14 C 0.50 10.34 7.49 -10.98 -0.08 10.26 16 15 O -0.55 -13.45 14.06 5.56 0.08 -13.37 16 16 C -0.13 -1.95 3.79 -27.88 -0.11 -2.05 16 17 C -0.04 -0.63 2.37 -88.96 -0.21 -0.84 16 18 H 0.09 1.37 7.90 -51.93 -0.41 0.96 16 19 C -0.12 -1.76 5.30 -24.43 -0.13 -1.89 16 20 C -0.10 -1.13 6.81 -24.76 -0.17 -1.30 16 21 C -0.17 -1.82 7.04 -89.50 -0.63 -2.45 16 22 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 23 C -0.15 -1.58 9.83 -26.73 -0.26 -1.84 16 24 C -0.16 -1.85 6.42 -89.50 -0.57 -2.42 16 25 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 27 H 0.03 0.67 6.66 -51.93 -0.35 0.32 16 28 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.26 7.13 8.31 -40.82 -0.34 6.80 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.07 1.23 6.43 -51.93 -0.33 0.89 16 32 H 0.05 0.70 6.44 -51.93 -0.33 0.36 16 33 H 0.08 1.10 7.40 -51.93 -0.38 0.72 16 34 H 0.08 1.17 7.98 -51.93 -0.41 0.76 16 35 H 0.06 0.92 7.21 -51.93 -0.37 0.55 16 36 H 0.08 1.43 7.29 -51.93 -0.38 1.05 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.09 1.00 7.21 -51.93 -0.37 0.62 16 LS Contribution 313.21 15.07 4.72 4.72 Total: -1.00 -30.46 313.21 -8.43 -38.88 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -6.52 Total: 1.87 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: -1.83 Total: -10.20 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.14 Total: -38.11 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: 0.08 Total: -13.37 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.46 -8.43 -38.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448907994.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.197 kcal (2) G-P(sol) polarization free energy of solvation -30.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds