Wall clock time and date at job start Sun Mar 29 2020 23:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50696 * 119.99707 * 2 1 4 4 N 1.46498 * 109.47121 * 125.57715 * 3 2 1 5 5 C 1.46495 * 119.99790 * 265.42041 * 4 3 2 6 6 C 1.50703 * 109.47374 * 274.14442 * 5 4 3 7 7 H 1.08005 * 119.99348 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00286 * 180.02562 * 6 5 4 9 9 N 1.31517 * 120.00143 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99885 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47255 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.47181 * 120.00219 * 10 8 6 13 13 H 1.48503 * 109.47510 * 239.99934 * 10 8 6 14 14 C 1.34781 * 119.99909 * 85.41933 * 4 3 2 15 15 O 1.21276 * 119.99933 * 5.56356 * 14 4 3 16 16 C 1.50705 * 119.99676 * 185.56069 * 14 4 3 17 17 H 1.09004 * 109.46859 * 33.82243 * 16 14 4 18 18 C 1.52995 * 109.47337 * 273.81609 * 16 14 4 19 19 C 1.53000 * 109.47043 * 153.81530 * 16 14 4 20 20 C 1.53778 * 113.61427 * 277.50245 * 19 16 14 21 21 C 1.53783 * 87.07787 * 220.01668 * 20 19 16 22 22 C 1.53775 * 113.61433 * 180.02562 * 19 16 14 23 23 H 1.07997 * 120.00219 * 359.97438 * 1 2 3 24 24 H 1.08005 * 119.99920 * 180.02562 * 1 2 3 25 25 H 1.08001 * 119.99937 * 180.02562 * 2 1 3 26 26 H 1.09000 * 109.47271 * 5.57194 * 3 2 1 27 27 H 1.09000 * 109.46964 * 245.57515 * 3 2 1 28 28 H 1.09001 * 109.47539 * 34.14639 * 5 4 3 29 29 H 1.09000 * 109.46933 * 154.14775 * 5 4 3 30 30 H 0.96994 * 119.99851 * 180.02562 * 9 8 6 31 31 H 1.09000 * 109.47212 * 303.16767 * 18 16 14 32 32 H 1.09000 * 109.46871 * 63.16637 * 18 16 14 33 33 H 1.08996 * 109.46843 * 183.16123 * 18 16 14 34 34 H 1.09007 * 112.84712 * 48.80302 * 19 16 14 35 35 H 1.09001 * 113.61595 * 334.56282 * 20 19 16 36 36 H 1.09005 * 113.61628 * 105.47075 * 20 19 16 37 37 H 1.09001 * 113.61217 * 270.87731 * 21 20 19 38 38 H 1.09005 * 113.68888 * 139.99415 * 21 20 19 39 39 H 1.09002 * 113.61246 * 254.53011 * 22 19 16 40 40 H 1.08996 * 113.61739 * 25.43166 * 22 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0036 1.3263 1.1234 5 6 2.6135 1.9436 2.3933 6 6 2.8961 3.4230 2.3405 7 1 3.3232 3.8596 1.4498 8 6 2.6095 4.2189 3.4292 9 7 2.0899 3.6871 4.5140 10 14 2.9606 6.0524 3.3639 11 1 3.5410 6.3986 2.0416 12 1 1.6962 6.8059 3.5615 13 1 3.9230 6.4108 4.4366 14 6 4.2273 0.7777 0.9885 15 8 4.5877 0.3573 -0.0905 16 6 5.1476 0.6869 2.1784 17 1 4.5592 0.5227 3.0811 18 6 5.9364 1.9909 2.3138 19 6 6.1192 -0.4789 1.9839 20 6 5.5297 -1.8440 2.3760 21 6 6.9031 -2.1741 2.9841 22 6 7.1062 -0.6592 3.1492 23 1 -0.5400 0.9353 0.0004 24 1 -0.5400 -0.9354 0.0004 25 1 1.8501 -0.9353 -0.0004 26 1 1.3594 2.1311 0.0998 27 1 2.6131 1.4073 -0.9357 28 1 1.5489 1.7830 2.5636 29 1 3.1834 1.4937 3.2062 30 1 1.8880 4.2471 5.2798 31 1 6.4809 2.1839 1.3895 32 1 5.2480 2.8133 2.5085 33 1 6.6420 1.9045 3.1400 34 1 6.5964 -0.4732 1.0038 35 1 4.7299 -1.7786 3.1137 36 1 5.2689 -2.4687 1.5217 37 1 7.5944 -2.6334 2.2775 38 1 6.8452 -2.7124 3.9302 39 1 8.1186 -0.3270 2.9191 40 1 6.7374 -0.2699 4.0981 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457816454.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:26:59 Heat of formation + Delta-G solvation = -11.306171 kcal Electronic energy + Delta-G solvation = -19300.297859 eV Core-core repulsion = 16501.786099 eV Total energy + Delta-G solvation = -2798.511760 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.74080 -37.98477 -35.35797 -33.65844 -32.32889 -31.71920 -27.48960 -26.11464 -25.44496 -24.87464 -23.03627 -21.94179 -19.73406 -19.04882 -18.07570 -16.53557 -16.25170 -15.77644 -15.07003 -14.64057 -14.45160 -14.31507 -13.87097 -13.19865 -12.66872 -12.40685 -12.31874 -12.22479 -12.05348 -11.50335 -11.46480 -11.42585 -11.13900 -10.98468 -10.87229 -10.86222 -10.59975 -10.22921 -10.05962 -10.00308 -9.74228 -9.68390 -9.14167 -8.76823 -8.51437 -7.69389 -6.19206 -4.25404 2.58908 3.20337 3.29438 3.33143 3.49884 4.08132 4.33410 4.87858 4.92747 5.00436 5.11886 5.13911 5.35892 5.53330 5.60499 5.68306 5.81305 5.94001 5.98730 6.01689 6.07731 6.08776 6.14999 6.22885 6.25554 6.37701 6.40802 6.52952 6.61869 6.76075 6.89360 6.94559 7.03302 7.09391 7.24467 7.58911 7.76196 8.06011 8.39920 8.80199 9.08570 9.41481 10.87349 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.015364 B = 0.008368 C = 0.006157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.020999 B = 3345.145500 C = 4546.394872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.153 4.153 3 C 0.143 3.857 4 N -0.593 5.593 5 C 0.236 3.764 6 C -0.533 4.533 7 H 0.062 0.938 8 C 0.065 3.935 9 N -0.890 5.890 10 Si 0.893 3.107 11 H -0.272 1.272 12 H -0.283 1.283 13 H -0.282 1.282 14 C 0.523 3.477 15 O -0.576 6.576 16 C -0.093 4.093 17 H 0.093 0.907 18 C -0.145 4.145 19 C -0.091 4.091 20 C -0.138 4.138 21 C -0.142 4.142 22 C -0.135 4.135 23 H 0.097 0.903 24 H 0.092 0.908 25 H 0.103 0.897 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.033 0.967 29 H 0.043 0.957 30 H 0.264 0.736 31 H 0.047 0.953 32 H 0.092 0.908 33 H 0.055 0.945 34 H 0.096 0.904 35 H 0.078 0.922 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.901 -7.265 -2.240 8.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.172 4.172 3 C 0.020 3.980 4 N -0.323 5.323 5 C 0.116 3.884 6 C -0.571 4.571 7 H 0.080 0.920 8 C -0.138 4.138 9 N -0.528 5.528 10 Si 0.720 3.280 11 H -0.196 1.196 12 H -0.209 1.209 13 H -0.208 1.208 14 C 0.312 3.688 15 O -0.457 6.457 16 C -0.114 4.114 17 H 0.111 0.889 18 C -0.203 4.203 19 C -0.110 4.110 20 C -0.175 4.175 21 C -0.179 4.179 22 C -0.172 4.172 23 H 0.115 0.885 24 H 0.110 0.890 25 H 0.121 0.879 26 H 0.101 0.899 27 H 0.095 0.905 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.111 0.889 33 H 0.074 0.926 34 H 0.114 0.886 35 H 0.097 0.903 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.004 -7.408 -2.594 8.812 hybrid contribution -0.041 1.062 0.194 1.080 sum 3.964 -6.346 -2.400 7.858 Atomic orbital electron populations 1.23754 0.95770 1.01482 1.02278 1.23404 0.96047 0.99389 0.98373 1.20375 0.92101 0.94599 0.90923 1.48225 1.12937 1.55918 1.15189 1.19488 0.96741 0.92729 0.79433 1.21503 1.42488 0.92603 1.00552 0.91988 1.24928 0.94812 0.98823 0.95197 1.69932 1.42751 1.35907 1.04203 0.86515 0.78126 0.85048 0.78272 1.19623 1.20880 1.20788 1.20523 0.81975 0.76581 0.89717 1.90552 1.75595 1.50942 1.28635 1.21218 0.95868 0.96813 0.97537 0.88873 1.21792 1.00430 0.97176 1.00861 1.22437 0.96198 0.93286 0.99072 1.22953 0.96694 0.97429 1.00459 1.22779 0.97836 0.96695 1.00628 1.22930 0.99299 0.95830 0.99141 0.88470 0.88980 0.87942 0.89852 0.90456 0.94940 0.93937 0.92594 0.93428 0.88918 0.92625 0.88593 0.90299 0.91861 0.90627 0.91855 0.91808 0.89968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.89 14.32 29.01 0.42 -2.47 16 2 C -0.15 -2.60 9.81 -36.03 -0.35 -2.95 16 3 C 0.14 2.75 5.87 -5.20 -0.03 2.72 16 4 N -0.59 -12.64 2.45 -176.44 -0.43 -13.07 16 5 C 0.24 5.55 4.89 -5.19 -0.03 5.52 16 6 C -0.53 -13.53 7.49 -34.44 -0.26 -13.79 16 7 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 8 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 9 N -0.89 -24.08 13.29 55.43 0.74 -23.34 16 10 Si 0.89 20.26 29.54 -169.99 -5.02 15.24 16 11 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 13 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 14 C 0.52 11.01 6.72 -10.98 -0.07 10.94 16 15 O -0.58 -13.13 15.59 5.56 0.09 -13.04 16 16 C -0.09 -1.72 1.71 -91.77 -0.16 -1.88 16 17 H 0.09 1.77 5.96 -51.93 -0.31 1.46 16 18 C -0.15 -2.65 8.99 37.16 0.33 -2.32 16 19 C -0.09 -1.45 2.81 -89.81 -0.25 -1.70 16 20 C -0.14 -1.99 7.62 -25.92 -0.20 -2.19 16 21 C -0.14 -1.73 8.08 -25.94 -0.21 -1.94 16 22 C -0.13 -1.78 6.62 -25.94 -0.17 -1.95 16 23 H 0.10 1.39 7.84 -52.49 -0.41 0.98 16 24 H 0.09 1.18 8.06 -52.48 -0.42 0.76 16 25 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 26 H 0.08 1.58 7.69 -51.93 -0.40 1.18 16 27 H 0.08 1.50 7.49 -51.93 -0.39 1.11 16 28 H 0.03 0.82 8.10 -51.93 -0.42 0.39 16 29 H 0.04 1.03 5.65 -51.93 -0.29 0.74 16 30 H 0.26 6.81 8.31 -40.82 -0.34 6.48 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.09 1.95 5.90 -51.93 -0.31 1.64 16 33 H 0.05 0.89 7.34 -51.93 -0.38 0.50 16 34 H 0.10 1.64 7.62 -51.93 -0.40 1.25 16 35 H 0.08 1.15 7.96 -51.93 -0.41 0.73 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 LS Contribution 325.17 15.07 4.90 4.90 Total: -1.00 -27.58 325.17 -7.45 -35.03 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -6.64 Total: 4.71 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: -1.08 Total: -10.42 kcal Atomic # 7 Polarization: -36.72 SS G_CDS: 0.30 Total: -36.41 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: 0.09 Total: -13.04 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -27.58 -7.45 -35.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457816454.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.723 kcal (2) G-P(sol) polarization free energy of solvation -27.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds