Wall clock time and date at job start Sun Mar 29 2020 23:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50696 * 119.99707 * 2 1 4 4 N 1.46498 * 109.47121 * 125.57715 * 3 2 1 5 5 C 1.46495 * 119.99790 * 265.42041 * 4 3 2 6 6 C 1.50703 * 109.47374 * 274.14442 * 5 4 3 7 7 H 1.08005 * 119.99348 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00286 * 180.02562 * 6 5 4 9 9 N 1.31517 * 120.00143 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99885 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47255 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.47181 * 120.00219 * 10 8 6 13 13 H 1.48503 * 109.47510 * 239.99934 * 10 8 6 14 14 C 1.34781 * 119.99909 * 85.41933 * 4 3 2 15 15 O 1.21276 * 119.99933 * 5.56356 * 14 4 3 16 16 C 1.50705 * 119.99676 * 185.56069 * 14 4 3 17 17 H 1.09004 * 109.46859 * 33.82243 * 16 14 4 18 18 C 1.52995 * 109.47337 * 273.81609 * 16 14 4 19 19 C 1.53000 * 109.47043 * 153.81530 * 16 14 4 20 20 C 1.53778 * 113.61427 * 277.50245 * 19 16 14 21 21 C 1.53783 * 87.07787 * 220.01668 * 20 19 16 22 22 C 1.53775 * 113.61433 * 180.02562 * 19 16 14 23 23 H 1.07997 * 120.00219 * 359.97438 * 1 2 3 24 24 H 1.08005 * 119.99920 * 180.02562 * 1 2 3 25 25 H 1.08001 * 119.99937 * 180.02562 * 2 1 3 26 26 H 1.09000 * 109.47271 * 5.57194 * 3 2 1 27 27 H 1.09000 * 109.46964 * 245.57515 * 3 2 1 28 28 H 1.09001 * 109.47539 * 34.14639 * 5 4 3 29 29 H 1.09000 * 109.46933 * 154.14775 * 5 4 3 30 30 H 0.96994 * 119.99851 * 180.02562 * 9 8 6 31 31 H 1.09000 * 109.47212 * 303.16767 * 18 16 14 32 32 H 1.09000 * 109.46871 * 63.16637 * 18 16 14 33 33 H 1.08996 * 109.46843 * 183.16123 * 18 16 14 34 34 H 1.09007 * 112.84712 * 48.80302 * 19 16 14 35 35 H 1.09001 * 113.61595 * 334.56282 * 20 19 16 36 36 H 1.09005 * 113.61628 * 105.47075 * 20 19 16 37 37 H 1.09001 * 113.61217 * 270.87731 * 21 20 19 38 38 H 1.09005 * 113.68888 * 139.99415 * 21 20 19 39 39 H 1.09002 * 113.61246 * 254.53011 * 22 19 16 40 40 H 1.08996 * 113.61739 * 25.43166 * 22 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0036 1.3263 1.1234 5 6 2.6135 1.9436 2.3933 6 6 2.8961 3.4230 2.3405 7 1 3.3232 3.8596 1.4498 8 6 2.6095 4.2189 3.4292 9 7 2.0899 3.6871 4.5140 10 14 2.9606 6.0524 3.3639 11 1 3.5410 6.3986 2.0416 12 1 1.6962 6.8059 3.5615 13 1 3.9230 6.4108 4.4366 14 6 4.2273 0.7777 0.9885 15 8 4.5877 0.3573 -0.0905 16 6 5.1476 0.6869 2.1784 17 1 4.5592 0.5227 3.0811 18 6 5.9364 1.9909 2.3138 19 6 6.1192 -0.4789 1.9839 20 6 5.5297 -1.8440 2.3760 21 6 6.9031 -2.1741 2.9841 22 6 7.1062 -0.6592 3.1492 23 1 -0.5400 0.9353 0.0004 24 1 -0.5400 -0.9354 0.0004 25 1 1.8501 -0.9353 -0.0004 26 1 1.3594 2.1311 0.0998 27 1 2.6131 1.4073 -0.9357 28 1 1.5489 1.7830 2.5636 29 1 3.1834 1.4937 3.2062 30 1 1.8880 4.2471 5.2798 31 1 6.4809 2.1839 1.3895 32 1 5.2480 2.8133 2.5085 33 1 6.6420 1.9045 3.1400 34 1 6.5964 -0.4732 1.0038 35 1 4.7299 -1.7786 3.1137 36 1 5.2689 -2.4687 1.5217 37 1 7.5944 -2.6334 2.2775 38 1 6.8452 -2.7124 3.9302 39 1 8.1186 -0.3270 2.9191 40 1 6.7374 -0.2699 4.0981 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457816454.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:26:58 Heat of formation + Delta-G solvation = -24.463914 kcal Electronic energy + Delta-G solvation = -19300.868421 eV Core-core repulsion = 16501.786099 eV Total energy + Delta-G solvation = -2799.082323 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.27273 -39.31382 -37.04033 -35.30121 -34.12031 -33.17592 -29.36545 -27.58277 -26.76388 -26.06272 -24.93133 -23.36382 -21.06584 -20.25610 -19.72511 -18.47475 -17.88400 -17.40145 -16.45948 -16.17195 -16.09655 -15.66331 -15.30215 -14.70578 -14.40208 -14.03716 -13.86269 -13.42085 -13.34110 -13.18874 -13.10484 -12.91385 -12.73106 -12.64745 -12.41223 -12.25900 -12.16819 -11.91789 -11.62172 -11.33477 -11.18686 -10.95779 -10.65464 -10.55091 -10.20937 -9.46489 -8.18925 -6.31458 1.27311 1.39956 1.43975 1.53717 1.81027 2.37700 2.53379 3.11162 3.60292 3.75987 3.81650 3.94701 4.05181 4.11618 4.21341 4.37359 4.44116 4.58833 4.61252 4.78670 4.87536 4.87960 4.90263 4.92003 5.00372 5.01452 5.10445 5.13186 5.15852 5.25771 5.43240 5.49910 5.63336 5.65122 5.68346 5.75453 5.93797 6.07583 6.59957 6.83497 7.32528 7.43926 8.86962 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.015364 B = 0.008368 C = 0.006157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.020999 B = 3345.145500 C = 4546.394872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.179 4.179 3 C 0.141 3.859 4 N -0.598 5.598 5 C 0.253 3.747 6 C -0.536 4.536 7 H 0.050 0.950 8 C 0.026 3.974 9 N -0.917 5.917 10 Si 0.951 3.049 11 H -0.273 1.273 12 H -0.279 1.279 13 H -0.276 1.276 14 C 0.517 3.483 15 O -0.596 6.596 16 C -0.090 4.090 17 H 0.085 0.915 18 C -0.138 4.138 19 C -0.098 4.098 20 C -0.143 4.143 21 C -0.127 4.127 22 C -0.127 4.127 23 H 0.104 0.896 24 H 0.119 0.881 25 H 0.097 0.903 26 H 0.081 0.919 27 H 0.069 0.931 28 H 0.015 0.985 29 H 0.036 0.964 30 H 0.268 0.732 31 H 0.046 0.954 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.056 0.944 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.359 -7.599 -1.781 8.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.198 4.198 3 C 0.018 3.982 4 N -0.327 5.327 5 C 0.133 3.867 6 C -0.575 4.575 7 H 0.069 0.931 8 C -0.175 4.175 9 N -0.556 5.556 10 Si 0.777 3.223 11 H -0.197 1.197 12 H -0.205 1.205 13 H -0.202 1.202 14 C 0.307 3.693 15 O -0.479 6.479 16 C -0.111 4.111 17 H 0.103 0.897 18 C -0.196 4.196 19 C -0.117 4.117 20 C -0.180 4.180 21 C -0.164 4.164 22 C -0.165 4.165 23 H 0.122 0.878 24 H 0.137 0.863 25 H 0.115 0.885 26 H 0.099 0.901 27 H 0.087 0.913 28 H 0.033 0.967 29 H 0.053 0.947 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.093 0.907 36 H 0.075 0.925 37 H 0.106 0.894 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.457 -7.747 -2.145 9.191 hybrid contribution -0.260 1.153 -0.002 1.182 sum 4.197 -6.594 -2.147 8.106 Atomic orbital electron populations 1.24020 0.94895 1.03082 0.98361 1.23176 0.96778 0.97902 1.01953 1.20447 0.91856 0.96034 0.89817 1.48269 1.13647 1.55766 1.15010 1.19124 0.95313 0.92034 0.80246 1.21583 1.42236 0.93528 1.00143 0.93147 1.25565 0.94606 1.02481 0.94844 1.70010 1.43557 1.37314 1.04752 0.85610 0.78030 0.80526 0.78154 1.19718 1.20490 1.20151 1.21023 0.82029 0.75921 0.90284 1.90529 1.75900 1.51832 1.29641 1.21241 0.95857 0.98132 0.95827 0.89659 1.21707 1.00119 0.95919 1.01808 1.22454 0.96648 0.92891 0.99687 1.22982 0.98132 0.96531 1.00375 1.22734 0.96013 0.96164 1.01502 1.22914 0.99124 0.96705 0.97722 0.87824 0.86259 0.88461 0.90075 0.91296 0.96719 0.94665 0.92334 0.93467 0.91852 0.90097 0.89916 0.90696 0.92499 0.89370 0.90109 0.90362 0.89809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.64 14.32 67.77 0.97 -3.66 16 2 C -0.18 -6.06 9.81 25.64 0.25 -5.81 16 3 C 0.14 5.52 5.87 85.63 0.50 6.03 16 4 N -0.60 -26.11 2.45 -830.51 -2.03 -28.15 16 5 C 0.25 12.19 4.89 85.63 0.42 12.61 16 6 C -0.54 -27.61 7.49 25.60 0.19 -27.42 16 7 H 0.05 2.67 7.81 -2.91 -0.02 2.65 16 8 C 0.03 1.33 5.46 84.65 0.46 1.79 16 9 N -0.92 -49.67 13.29 21.45 0.28 -49.38 16 10 Si 0.95 41.39 29.54 68.60 2.03 43.42 16 11 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 12 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 13 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 14 C 0.52 22.25 6.72 87.66 0.59 22.83 16 15 O -0.60 -27.73 15.59 -3.02 -0.05 -27.78 16 16 C -0.09 -3.32 1.71 -11.54 -0.02 -3.34 16 17 H 0.09 3.29 5.96 -2.38 -0.01 3.27 16 18 C -0.14 -5.02 8.99 71.98 0.65 -4.37 16 19 C -0.10 -3.05 2.81 -10.27 -0.03 -3.08 16 20 C -0.14 -3.99 7.62 31.12 0.24 -3.76 16 21 C -0.13 -2.77 8.08 31.11 0.25 -2.52 16 22 C -0.13 -3.09 6.62 31.10 0.21 -2.88 16 23 H 0.10 2.78 7.84 -2.91 -0.02 2.75 16 24 H 0.12 2.71 8.06 -2.91 -0.02 2.68 16 25 H 0.10 3.39 8.06 -2.91 -0.02 3.36 16 26 H 0.08 3.13 7.69 -2.39 -0.02 3.12 16 27 H 0.07 2.76 7.49 -2.39 -0.02 2.74 16 28 H 0.01 0.76 8.10 -2.39 -0.02 0.74 16 29 H 0.04 1.75 5.65 -2.39 -0.01 1.74 16 30 H 0.27 13.71 8.31 -92.71 -0.77 12.94 16 31 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.06 2.68 5.90 -2.39 -0.01 2.67 16 33 H 0.08 2.48 7.34 -2.39 -0.02 2.46 16 34 H 0.08 2.81 7.62 -2.38 -0.02 2.79 16 35 H 0.07 2.14 7.96 -2.39 -0.02 2.12 16 36 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 37 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 39 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.08 2.03 8.10 -2.39 -0.02 2.01 16 Total: -1.00 -58.50 325.17 5.90 -52.60 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: 0.99 Total: 22.87 kcal Atomic # 6 Polarization: -18.25 SS G_CDS: 4.68 Total: -13.58 kcal Atomic # 7 Polarization: -75.78 SS G_CDS: -1.75 Total: -77.53 kcal Atomic # 8 Polarization: -27.73 SS G_CDS: -0.05 Total: -27.78 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.42 kcal Total: -58.50 5.90 -52.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457816454.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.137 kcal (2) G-P(sol) polarization free energy of solvation -58.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds