Wall clock time and date at job start Sun Mar 29 2020 23:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.46821 * 2 1 4 4 C 1.50692 * 109.47108 * 120.00394 * 2 1 3 5 5 H 1.08001 * 120.00016 * 119.99844 * 4 2 1 6 6 C 1.37878 * 120.00283 * 299.99423 * 4 2 1 7 7 N 1.31521 * 120.00148 * 179.97438 * 6 4 2 8 8 Si 1.86797 * 119.99676 * 0.02562 * 6 4 2 9 9 H 1.48495 * 109.47545 * 89.99801 * 8 6 4 10 10 H 1.48506 * 109.46827 * 209.99583 * 8 6 4 11 11 H 1.48499 * 109.47121 * 329.99172 * 8 6 4 12 12 N 1.46495 * 109.46769 * 240.00574 * 2 1 3 13 13 C 1.46509 * 120.00176 * 299.99482 * 12 2 1 14 14 C 1.34779 * 120.00352 * 119.99877 * 12 2 1 15 15 O 1.21613 * 119.99815 * 359.97438 * 14 12 2 16 16 C 1.47097 * 120.00376 * 179.97438 * 14 12 2 17 17 C 1.32991 * 120.00188 * 173.18740 * 16 14 12 18 18 C 1.50701 * 119.99981 * 346.24456 * 17 16 14 19 19 C 1.54262 * 110.03431 * 227.45210 * 18 17 16 20 20 C 1.54957 * 104.16327 * 217.13884 * 19 18 17 21 21 C 1.54891 * 102.78072 * 37.88606 * 20 19 18 22 22 C 1.53882 * 110.03061 * 110.23592 * 18 17 16 23 23 H 1.08999 * 109.46821 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47400 * 59.99228 * 1 2 3 25 25 H 1.09007 * 109.46906 * 299.99487 * 1 2 3 26 26 H 0.96990 * 119.99525 * 180.02562 * 7 6 4 27 27 H 1.09004 * 109.46543 * 90.00145 * 13 12 2 28 28 H 1.08999 * 109.47416 * 210.00306 * 13 12 2 29 29 H 1.08995 * 109.46858 * 330.00564 * 13 12 2 30 30 H 1.08000 * 119.99987 * 353.19400 * 16 14 12 31 31 H 1.08003 * 120.00213 * 166.23555 * 17 16 14 32 32 H 1.09000 * 110.01362 * 348.84818 * 18 17 16 33 33 H 1.09005 * 110.48553 * 335.78235 * 19 18 17 34 34 H 1.09005 * 110.48739 * 98.42344 * 19 18 17 35 35 H 1.09002 * 110.72000 * 279.57082 * 20 19 18 36 36 H 1.08997 * 110.76706 * 156.22532 * 20 19 18 37 37 H 1.08992 * 110.48498 * 203.41022 * 21 20 19 38 38 H 1.09001 * 110.59659 * 80.82055 * 21 20 19 39 39 H 1.09004 * 110.02642 * 238.56528 * 22 18 17 40 40 H 1.08997 * 110.03201 * 359.95125 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6533 -1.5886 1.1312 6 6 1.6994 -0.2395 2.4827 7 7 2.1374 -0.8598 3.5565 8 14 0.6250 1.2790 2.6542 9 1 -0.8025 0.8728 2.6998 10 1 0.9763 1.9949 3.9070 11 1 0.8474 2.1765 1.4922 12 7 2.0183 -0.6905 -1.1962 13 6 1.6644 -2.0931 -1.4282 14 6 2.7931 -0.0355 -2.0834 15 8 3.0866 1.1290 -1.8912 16 6 3.2838 -0.7289 -3.2843 17 6 3.9330 -0.0500 -4.2257 18 6 3.9008 1.4567 -4.2257 19 6 3.5814 1.9785 -5.6418 20 6 4.4523 3.2525 -5.7818 21 6 5.7614 2.8542 -5.0559 22 6 5.2861 2.0135 -3.8529 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8898 25 1 -0.3633 0.5138 0.8901 26 1 1.9028 -0.5287 4.4374 27 1 0.7375 -2.1442 -1.9995 28 1 2.4628 -2.5818 -1.9866 29 1 1.5295 -2.5968 -0.4710 30 1 3.1168 -1.7895 -3.4015 31 1 4.4834 -0.5783 -4.9902 32 1 3.1522 1.8138 -3.5184 33 1 3.8625 1.2401 -6.3928 34 1 2.5236 2.2272 -5.7272 35 1 3.9784 4.1000 -5.2864 36 1 4.6450 3.4756 -6.8312 37 1 6.2934 3.7420 -4.7144 38 1 6.3968 2.2580 -5.7108 39 1 5.2095 2.6416 -2.9654 40 1 5.9813 1.1939 -3.6712 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493724128.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:32:47 Heat of formation + Delta-G solvation = -35.165812 kcal Electronic energy + Delta-G solvation = -18949.897107 eV Core-core repulsion = 16150.350715 eV Total energy + Delta-G solvation = -2799.546392 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.01793 -39.03165 -37.20402 -34.81940 -34.08104 -32.23953 -29.50605 -28.88492 -27.61275 -27.17657 -24.61610 -21.94327 -21.47281 -20.83197 -19.45203 -18.88052 -18.02406 -17.22102 -16.62194 -16.43919 -15.81152 -15.51689 -14.88529 -14.73812 -14.32091 -14.19078 -14.10595 -13.82950 -13.68201 -13.46498 -13.02867 -12.99509 -12.68414 -12.53413 -12.06825 -11.93153 -11.89096 -11.73289 -11.57873 -11.46704 -11.42639 -11.33931 -10.80965 -10.32547 -9.96696 -9.27906 -8.36891 -6.41030 0.51746 1.23945 1.33404 1.42385 2.25934 2.36486 2.47094 2.98596 3.76413 3.81050 3.86850 3.92524 4.24543 4.43355 4.45362 4.55548 4.57540 4.59660 4.64534 4.72964 4.79932 4.81160 4.83690 4.87695 4.97480 5.02186 5.07289 5.12851 5.20077 5.28647 5.38435 5.43166 5.49200 5.53290 5.54059 5.77028 5.85796 6.21735 6.60818 6.81870 7.21589 7.45966 8.79309 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.029372 B = 0.005482 C = 0.005141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.065275 B = 5106.082529 C = 5445.188168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.231 3.769 3 H 0.030 0.970 4 C -0.526 4.526 5 H 0.044 0.956 6 C 0.022 3.978 7 N -0.940 5.940 8 Si 0.942 3.058 9 H -0.253 1.253 10 H -0.295 1.295 11 H -0.264 1.264 12 N -0.596 5.596 13 C 0.080 3.920 14 C 0.521 3.479 15 O -0.587 6.587 16 C -0.234 4.234 17 C -0.040 4.040 18 C -0.107 4.107 19 C -0.111 4.111 20 C -0.122 4.122 21 C -0.119 4.119 22 C -0.105 4.105 23 H 0.069 0.931 24 H 0.054 0.946 25 H 0.041 0.959 26 H 0.268 0.732 27 H 0.072 0.928 28 H 0.090 0.910 29 H 0.060 0.940 30 H 0.158 0.842 31 H 0.161 0.839 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.086 0.914 37 H 0.063 0.937 38 H 0.082 0.918 39 H 0.034 0.966 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.452 1.657 -20.636 20.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.127 3.873 3 H 0.048 0.952 4 C -0.564 4.564 5 H 0.062 0.938 6 C -0.176 4.176 7 N -0.579 5.579 8 Si 0.769 3.231 9 H -0.178 1.178 10 H -0.222 1.222 11 H -0.189 1.189 12 N -0.325 5.325 13 C -0.062 4.062 14 C 0.314 3.686 15 O -0.471 6.471 16 C -0.254 4.254 17 C -0.060 4.060 18 C -0.125 4.125 19 C -0.148 4.148 20 C -0.160 4.160 21 C -0.156 4.156 22 C -0.143 4.143 23 H 0.088 0.912 24 H 0.073 0.927 25 H 0.059 0.941 26 H 0.078 0.922 27 H 0.091 0.909 28 H 0.108 0.892 29 H 0.079 0.921 30 H 0.175 0.825 31 H 0.178 0.822 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.105 0.895 37 H 0.082 0.918 38 H 0.100 0.900 39 H 0.053 0.947 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.566 2.201 -20.308 20.487 hybrid contribution -0.373 0.420 1.242 1.363 sum 1.193 2.621 -19.066 19.282 Atomic orbital electron populations 1.22285 0.96714 1.02161 0.99735 1.18917 0.91713 0.93419 0.83212 0.95220 1.21385 1.31649 1.13081 0.90322 0.93785 1.25649 0.97168 0.99498 0.95305 1.70004 1.47173 1.42162 0.98585 0.85959 0.79901 0.80153 0.77049 1.17839 1.22217 1.18888 1.47906 1.49264 1.13424 1.21954 1.21877 1.01511 0.80530 1.02276 1.19438 0.77937 0.86200 0.85030 1.90589 1.60225 1.18705 1.77583 1.22835 1.05831 1.02010 0.94704 1.24067 0.90543 0.95634 0.95748 1.21595 0.99384 0.92713 0.98789 1.22446 0.99585 0.97756 0.95044 1.22505 0.95392 0.97120 1.00969 1.22381 0.97652 0.99339 0.96255 1.21960 0.95462 0.98817 0.98087 0.91246 0.92740 0.94059 0.92247 0.90932 0.89178 0.92116 0.82503 0.82185 0.89715 0.89547 0.92275 0.92724 0.89524 0.91773 0.89970 0.94668 0.92380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.44 8.67 71.98 0.62 -5.81 16 2 C 0.23 11.46 2.23 44.25 0.10 11.56 16 3 H 0.03 1.67 5.96 -2.39 -0.01 1.65 16 4 C -0.53 -30.30 8.57 25.60 0.22 -30.08 16 5 H 0.04 2.77 7.58 -2.91 -0.02 2.74 16 6 C 0.02 1.32 5.45 84.65 0.46 1.78 16 7 N -0.94 -58.55 13.96 21.45 0.30 -58.25 16 8 Si 0.94 46.07 24.37 68.60 1.67 47.75 16 9 H -0.25 -11.32 6.87 99.48 0.68 -10.64 16 10 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 11 H -0.26 -12.84 6.53 99.48 0.65 -12.19 16 12 N -0.60 -24.93 2.75 -831.08 -2.29 -27.22 16 13 C 0.08 2.56 9.19 127.77 1.17 3.74 16 14 C 0.52 21.07 7.44 86.57 0.64 21.72 16 15 O -0.59 -27.92 12.47 -4.07 -0.05 -27.97 16 16 C -0.23 -6.61 9.23 23.43 0.22 -6.39 16 17 C -0.04 -0.97 8.46 24.52 0.21 -0.76 16 18 C -0.11 -2.95 2.39 -10.81 -0.03 -2.97 16 19 C -0.11 -2.25 6.36 31.69 0.20 -2.05 16 20 C -0.12 -2.29 6.91 31.91 0.22 -2.07 16 21 C -0.12 -2.36 6.83 31.67 0.22 -2.15 16 22 C -0.11 -2.88 6.33 31.32 0.20 -2.69 16 23 H 0.07 2.72 7.67 -2.39 -0.02 2.71 16 24 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 25 H 0.04 1.81 3.27 -2.38 -0.01 1.80 16 26 H 0.27 15.66 8.31 -92.72 -0.77 14.88 16 27 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.09 2.27 6.02 -2.39 -0.01 2.26 16 29 H 0.06 2.22 7.02 -2.39 -0.02 2.20 16 30 H 0.16 3.34 6.16 -2.91 -0.02 3.32 16 31 H 0.16 2.49 8.06 -2.91 -0.02 2.46 16 32 H 0.09 3.14 4.95 -9.02 -0.04 3.09 16 33 H 0.09 1.34 7.85 -2.38 -0.02 1.32 16 34 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 35 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.06 1.54 7.67 -2.39 -0.02 1.52 16 Total: -1.00 -72.21 307.76 4.99 -67.22 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: 0.90 Total: 14.65 kcal Atomic # 6 Polarization: -20.64 SS G_CDS: 4.46 Total: -16.18 kcal Atomic # 7 Polarization: -83.48 SS G_CDS: -1.99 Total: -85.47 kcal Atomic # 8 Polarization: -27.92 SS G_CDS: -0.05 Total: -27.97 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 1.67 Total: 47.75 kcal Total: -72.21 4.99 -67.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493724128.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.059 kcal (2) G-P(sol) polarization free energy of solvation -72.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds